Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g549 ATGGTGGGTCTATCTGTTGGTGAGAAGCATTTCATACAGGGTGGCATTGCTCAAGACCTTCGTACTGATGGTCGAAGAAGGTTAACATATCGACCTTTCAATGTAGAAACTGGAGTCATCCCACAGGCTAATGGATCAGCAAGAGTCAGGTTGGGTGGAACTGATGTTATTGCCAGTGTGAAGGCTGAGCTTGGAAAACCAAGCCCATCACAACCTGACAAGGGAAAGGTCAATATATATGTGGATTGCAGTCCCACGGCTGCACCAATGTTTGAGGGCAGAGGAGGGGAGGAATTGTCAACAGAACTTTCAGGTGCTCTTCAGCATTGTCTCCTTGGTGGTAAAAGTGGAGCAGGGGCTGGAATTGATCTCTCATCTCTGGTAGTTGTGGAAGGAAAGGTTTGTTGGGATCTCTATATTGATGGCCTTGTGGTTAGTTCTGATGGAAATCTGCTGGATGCCTTAGGTGCTGCCATTAAGGCTGCTCTGACCAACACGGGCATCCCAAAAGTCGAAGTTGCCGTTGGTGCATCTGGGGATGGCCTACCAGAGGTTGATATAAGTGATGATGAATATTTACAGTTTGACACCTCTGGGGTCCCTGTCATAGTTACCTTAACAAAGGTTGGTAGGCATTATATTGTAGATGCAACTTTAGAAGAGGAATCCCAAATGAGCTCAGCAGTTTCTGTTTCAGTGAGCGGGCAAGGCCGCATATGTGGGCTGATCAAACGAGGGGGTGCAGGTCTAGATCCAAGCGTTATACTTGATATGATATCTGTGGCAAAACATGTAAGTGAACAACTTATGAATAAATTGGATTCTGAGATATCTGCTGCAGAAGCCTTTGAAGAAGAGTCATGA 864 45.95 MVGLSVGEKHFIQGGIAQDLRTDGRRRLTYRPFNVETGVIPQANGSARVRLGGTDVIASVKAELGKPSPSQPDKGKVNIYVDCSPTAAPMFEGRGGEELSTELSGALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVVSSDGNLLDALGAAIKAALTNTGIPKVEVAVGASGDGLPEVDISDDEYLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAVSVSVSGQGRICGLIKRGGAGLDPSVILDMISVAKHVSEQLMNKLDSEISAAEAFEEES* 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6089264 6096741 - Vvi4g549 Vvi4g549 785328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g549 287 PANTHER EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN 1 285 - -
Vvi4g549 287 Coils Coil 266 286 - -
Vvi4g549 287 CDD RNase_PH_RRP42 4 279 - -
Vvi4g549 287 Pfam 3' exoribonuclease family, domain 1 30 169 IPR001247 -
Vvi4g549 287 Gene3D - 3 286 IPR027408 -
Vvi4g549 287 SUPERFAMILY Ribonuclease PH domain 2-like 196 282 IPR036345 -
Vvi4g549 287 Pfam 3' exoribonuclease family, domain 2 200 263 IPR015847 -
Vvi4g549 287 PANTHER BNAA05G29900D PROTEIN 1 285 - -
Vvi4g549 287 SUPERFAMILY Ribosomal protein S5 domain 2-like 4 223 IPR020568 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g549 K12589 RRP42, EXOSC7; exosome complex component RRP42 - vvi:100261229 520.776
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g549 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003502 1 11 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 0 1 1 1 4 3 1 48