Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g55 ATGGGAATCTGCATATCCACTGTATCTTCAGAGATTCAAGACTCTGGAGATGGCCATGAGAATATGGTATTCTTTGAAGATTCCACTGCTTCTATAGGAATTCAGAGGCTTGGCTCTCTTCATTCTCAGCCAGGAAGCAAAGGACTAAACCAAGATGCTGCCATCCTCCATCAGGGCTATGGAATGGAAGATGGAGCTTTCTGTGGAGTTTTTGACGGCCATGGAAAGAATGGTCACATAGTGAGCAAAATTGTGAGAAACCACTTACCATCATTGCTGCTAAACCAAAAGAACGCGCTCTTAAAAGCGAATACTGCAATGAAGGAGGCTTGTGTTGGAGCTTTCAAGGTGATGGACAAGGAGATTAAGCTTCAAGAGGATTTGGACTGCTCTTGCAGTGGAACCACTGCTGTAGTCATAGTAAAACAGGGAGACGATCTTGTTATAGCTAATCTTGGCGATTCAAGAGCAGTTTTAGGGACAATTACTGAGAATGGAGTCACTGCTGTTCAGTTAACTACTGATTTGAAGCCTGGCTTGCCCATGGAGGCAGACCGAATAAGGAAATGCAATGGCAGAGTGATCTCGCTGAAGGAAGAGCCGCACATTCAGCGCGTGTGGTTGCCCAATGAGGACTCACCTGGCCTAGCCATGTCTCGAGCTTTTGGAGACTTCCTGCTCAAGAACCATGGCATAATCGCCATCCCTGATATCTCATATCGCCGTCTAGCTTCCAATGACCAGTTTCTTGTTCTAGCAACTGATGGGGTGTGGGATGTGCTGAGTAACAGCCAAGTTGCAGGGATAGTTTGGTCAGCAGAGAGTGAAGAGGAGGCGGCGAAAGCAGTGGTGGATGCGGCCACTGCTGCATGGAAGCACAAGTTCCCTTCTTCAAAGGTGGATGACTGCACTGTGGTCTGCCTCTTCTTGCAGAAGAGGCAGCAAGTGCTTCAAGCCTGCAACCCTCCCAGTTGA 975 47.9 MGICISTVSSEIQDSGDGHENMVFFEDSTASIGIQRLGSLHSQPGSKGLNQDAAILHQGYGMEDGAFCGVFDGHGKNGHIVSKIVRNHLPSLLLNQKNALLKANTAMKEACVGAFKVMDKEIKLQEDLDCSCSGTTAVVIVKQGDDLVIANLGDSRAVLGTITENGVTAVQLTTDLKPGLPMEADRIRKCNGRVISLKEEPHIQRVWLPNEDSPGLAMSRAFGDFLLKNHGIIAIPDISYRRLASNDQFLVLATDGVWDVLSNSQVAGIVWSAESEEEAAKAVVDAATAAWKHKFPSSKVDDCTVVCLFLQKRQQVLQACNPPS* 325
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 660327 662113 - Vvi4g55 Vvi4g55 784834
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g55 324 ProSiteProfiles PPM-type phosphatase domain profile. 36 310 IPR001932 -
Vvi4g55 324 SUPERFAMILY PP2C-like 38 311 IPR036457 -
Vvi4g55 324 SMART PP2C_4 26 308 IPR001932 -
Vvi4g55 324 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 1 315 - -
Vvi4g55 324 Pfam Protein phosphatase 2C 62 289 IPR001932 -
Vvi4g55 324 Gene3D - 28 313 IPR036457 -
Vvi4g55 324 PANTHER ALPHABET, ISOFORM E-RELATED 1 315 - -
Vvi4g55 324 CDD PP2Cc 36 310 IPR001932 -
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g55 - - vvi:100266178 602.823