Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g553 ATGGAGAGGCATTTTGGGATTTGGGCCTTCTTAGTTTTGTTTCTGGTACTGGATTATGGGTGTTTTGGATGCTTAGATGAAGAGAGGATTGCTCTCTTAGAGCTGAAAGCTGCCTTCTGTTCTCCAGATTGTTCTTCTCTTCCATCTTGGGAAGATGAAGAAAGCGACTGCTGTGGATGGGAAAGGGTTGAGTGTAGCAACACAACAGGACGAGTACTCAAGCTTTTTCTCAACAATACGAGGGAGTCATCCCAGGAAGATTTGTACCTCAATGCCTCTTTGTTTATTCCATTTGTGGAGCTAAAAATACTCAATTTATCTACTAATATGCTGGTCACTTTGGGTGATGATGATGGCTCTGAAAGACCATTTAAGTTGAACAATCTGGAGCTCCTTGATTTAAGCAATAATACTTTGGACATTAGCATCCTCGCATCTTTGACTGAACTCTCATCACTTAAGTCTCTATCTCTAGGTACCAACATATTGGAAGGATCAATTCAAGAGTTGGCTGCTTTGCACAACTTGGAGGAGTTGGATTTGAGTAAGAATGACTTGGAAAGCTTTATAACAACCACAGGGCTCAAAAGTCTGAGAAAGTTGCGAGTTTTACACCTGGAGACAAATGATTTCAATATCAGCACCCTAAAATCATTGGGGAGGCTCTCATTGCTTAAGGAGCTTTATCTTGGAGGGAATAAATTGGAAGGTTCTGTTACACTCAGAGAGCTCAATAATTTGAGAAACCTGGAGGTTCTTGATTTGTCTTCTACCAATATCAGCAGCAGCATTCTGCAAATAGTAGAAGTAATGACATCACTTAAAGCCTTATCTTTGCGAAGCAATGGAATCAATGGTTCACAGACCGCGCTTCAAGGTTTGTGCAAACTTAAGAACCTTCAAGAGTTAGACCTCAGTGATAATGGGTTTGAGGGCAGTGTCTCTCCATGTTTGGGAAACTTGACCTCCCTTCGGGCATTGGATCTATCTAAAAATCGATTTTCAGGAAACCTAGATTCATCTCTCTTTGCTGGTCTCATGAAACTTGAATTCCTTTCCCTTTCACATAATGTCTTCCAAACTTTTCCTCCCATTAGCTCCTTTGCTAAGCATTCCAAGCTTGAGGTGCTTGATCTCATCTGGTCCATTCCAAGTTTTCTTCACTACCAGCATGATTTAAGAGCTATTTTCACCTTCCTTATCAATGATTTGCATGGCCAAATTCACAACTCCATATCCGGTAAGCTGCCGGGGTGGATTGGAAATATGTCAAATTTGGCTGCACTAGTCATGCCCAACAATAGTCTTGAAGGACCCATTCCTGTTGAATTTTGCTCCCTTGATGCCCTTGAACTCCTAGACCTTTCAAACAACAATCTCTCCGGCTCCCTTCCATCCTGCTTTAGATTCTCATCATATCTGTATCATAGCCAGCACATTGAATTATCTCAAGGAAACTTTCTATACTCCATGACTGGGATCGATCTCTCTTCCAACAAGTTGACAGGTGCAATACCTCCTGAAATTGGAAACTTGAGCCAGGTTCACGCATTGAATCTTTCTCACAACATCTTGACTGGGCCAATCCCAGCAGCCTTCTCAGGCCTGAAGAGCATAGAGAGCTTGGACCTCTCCTACAACAACCTGACTGGTACCATCCCTGGGGAACTCACTGAGCTAACCAACTTGGCAGTTTTCAGTGTGGCTTACAACAACTTAAGTGGTAAAATACCAGAAATGACAGCCCAGTTTGGGACATTCTTGGAAAACAGTTATGTGGGAAATCCTTATCTTTGTGGGTCACTGTTGAGGAAAAACTGCAGCAGAGCTGAGGAAGAAGCAGAAATCGAGGAAGGAGAAAAAGGTTTGACAGATAGGGACATTTTCTATGTGAGCTTTGGGGCGTCTTATGTAGTAGTATTATTGGGAGTTGCTGCTGTTCTCTACATCAATGGGGGTTGGAGAAAGAAATGGTTTCATGTCATTGATGTACTGATCACATGTTGCTGCAATTTTGTGATGCACCTTGTTGGTAAGTTCTCCGGTTAG 2049 42.31 MERHFGIWAFLVLFLVLDYGCFGCLDEERIALLELKAAFCSPDCSSLPSWEDEESDCCGWERVECSNTTGRVLKLFLNNTRESSQEDLYLNASLFIPFVELKILNLSTNMLVTLGDDDGSERPFKLNNLELLDLSNNTLDISILASLTELSSLKSLSLGTNILEGSIQELAALHNLEELDLSKNDLESFITTTGLKSLRKLRVLHLETNDFNISTLKSLGRLSLLKELYLGGNKLEGSVTLRELNNLRNLEVLDLSSTNISSSILQIVEVMTSLKALSLRSNGINGSQTALQGLCKLKNLQELDLSDNGFEGSVSPCLGNLTSLRALDLSKNRFSGNLDSSLFAGLMKLEFLSLSHNVFQTFPPISSFAKHSKLEVLDLIWSIPSFLHYQHDLRAIFTFLINDLHGQIHNSISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEFCSLDALELLDLSNNNLSGSLPSCFRFSSYLYHSQHIELSQGNFLYSMTGIDLSSNKLTGAIPPEIGNLSQVHALNLSHNILTGPIPAAFSGLKSIESLDLSYNNLTGTIPGELTELTNLAVFSVAYNNLSGKIPEMTAQFGTFLENSYVGNPYLCGSLLRKNCSRAEEEAEIEEGEKGLTDRDIFYVSFGASYVVVLLGVAAVLYINGGWRKKWFHVIDVLITCCCNFVMHLVGKFSG* 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6145586 6149666 + Vvi4g553 Vvi4g553 785332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g553 682 Pfam Leucine rich repeat 514 573 IPR001611 GO:0005515
Vvi4g553 682 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Vvi4g553 682 Gene3D Ribonuclease Inhibitor 24 210 IPR032675 -
Vvi4g553 682 PANTHER DNA-DAMAGE-REPAIR/TOLERATION PROTEIN DRT100-LIKE 484 673 - -
Vvi4g553 682 PANTHER DNA-DAMAGE-REPAIR/TOLERATION PROTEIN DRT100-LIKE 409 472 - -
Vvi4g553 682 PANTHER DNA-DAMAGE-REPAIR/TOLERATION PROTEIN DRT100-LIKE 258 395 - -
Vvi4g553 682 PANTHER DNA-DAMAGE-REPAIR/TOLERATION PROTEIN DRT100-LIKE 23 258 - -
Vvi4g553 682 ProSiteProfiles Leucine-rich repeat profile. 128 148 IPR001611 GO:0005515
Vvi4g553 682 ProSiteProfiles Leucine-rich repeat profile. 175 196 IPR001611 GO:0005515
Vvi4g553 682 Gene3D Ribonuclease Inhibitor 395 473 IPR032675 -
Vvi4g553 682 Pfam Leucine Rich Repeat 299 321 IPR001611 GO:0005515
Vvi4g553 682 Pfam Leucine Rich Repeat 450 469 IPR001611 GO:0005515
Vvi4g553 682 SUPERFAMILY L domain-like 243 580 - -
Vvi4g553 682 Gene3D Ribonuclease Inhibitor 211 394 IPR032675 -
Vvi4g553 682 SMART LRR_typ_2 488 512 IPR003591 -
Vvi4g553 682 SMART LRR_typ_2 447 470 IPR003591 -
Vvi4g553 682 SMART LRR_typ_2 536 560 IPR003591 -
Vvi4g553 682 SMART LRR_typ_2 173 196 IPR003591 -
Vvi4g553 682 SMART LRR_typ_2 271 293 IPR003591 -
Vvi4g553 682 SMART LRR_typ_2 346 370 IPR003591 -
Vvi4g553 682 SMART LRR_typ_2 198 221 IPR003591 -
Vvi4g553 682 SMART LRR_typ_2 321 345 IPR003591 -
Vvi4g553 682 SMART LRR_typ_2 247 270 IPR003591 -
Vvi4g553 682 SMART LRR_typ_2 297 320 IPR003591 -
Vvi4g553 682 SMART LRR_typ_2 98 121 IPR003591 -
Vvi4g553 682 SMART LRR_sd22_2 126 149 - -
Vvi4g553 682 SMART LRR_sd22_2 271 296 - -
Vvi4g553 682 SMART LRR_sd22_2 173 194 - -
Vvi4g553 682 SMART LRR_sd22_2 222 252 - -
Vvi4g553 682 SMART LRR_sd22_2 536 565 - -
Vvi4g553 682 SMART LRR_sd22_2 150 172 - -
Vvi4g553 682 SMART LRR_sd22_2 297 323 - -
Vvi4g553 682 SMART LRR_sd22_2 346 367 - -
Vvi4g553 682 Gene3D Ribonuclease Inhibitor 487 603 IPR032675 -
Vvi4g553 682 PANTHER RECEPTOR-LIKE PROTEIN 14 484 673 - -
Vvi4g553 682 PANTHER RECEPTOR-LIKE PROTEIN 14 409 472 - -
Vvi4g553 682 PANTHER RECEPTOR-LIKE PROTEIN 14 258 395 - -
Vvi4g553 682 PANTHER RECEPTOR-LIKE PROTEIN 14 23 258 - -
Vvi4g553 682 SUPERFAMILY L domain-like 24 286 - -
Vvi4g553 682 PRINTS Leucine-rich repeat signature 450 463 - -
Vvi4g553 682 PRINTS Leucine-rich repeat signature 536 549 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g553 - - - vvi:100257781 780.015
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g553 Vvi9g861 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g553 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000485 5 2 8 15 5 2 1 1 1 4 2 4 1 6 6 1 4 5 0 1 2 2 0 4 6 1 4 4 1 8 106