Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g554 ATGTGTTATTACAGAAATTGGAGCTTGAGTACACGTGCTTCACTTCATCCCACTGGGAAGAAGAAGACTCCGGGGCCGTCGAAACCGGGCGACGCCAGCGCGAAGCACGGAAAAACGACGGCCTTTGATGAGGACACGGCTGTCTTCATCACAATGTCTCAGGAATTGAAAGAAGAAGGTAACAAGCTGTTTCAAAAGCGCGACCATGAAGGGGCGATGTTGAAGTATGAAAAAGCCCTAAAGTTGCTTCCCAAAAACCATATTGATATTGCCTATTTGAGGTCTAACATGGCCTCTTGCTATATGCTAATGGGCATTGGGGAGTACCCACGAGCAATAAACCAATGCAATTTGGCGATTGAGGTCTCCCCAAAATACAGTAAGGCGCTTTTGAAGCGTGCTAAGTGTTATGAGGCTCTGAATAGACTTGATTTAGCATTGAAGGATGTTAACAGTATTCTGAGTATTGAATCTAATAATCTTGCTGCGTTGGAGATCGCAGACAGGGTTAAAAAGGCCATAGAGGAAAAGGGTATCAAGGTAGATGATAAGGAAATTGTTATGGCTGCGGAGTATACCGAGTCACCTCCCTATAAGGCTGTAAAACAGAAGACTAAGAAGAAGAAGAGTAACAAAACTGAGGTGAAGAAACTGCTGGATAAGGCAGTTGTGAAACCGGTGGATAAGGCAGTTGTGAAACCGGTAGATAAGGCAGTTGTGGAGGAGAATGTTGGTGTTGAAGAACAAGTGGTGACCGTGAGTAGGCCTGTGAAGTTGGTGTTCAATGAGGATATAAGGTGGGCACAGTTACCGGTTAATTGTAGTATTCGATTGGTGAGGGACATAGTTCAAGACCGGTTTCCAAGCTTGAAGGGTATTCTTGTAAAATATAGGGATCATGAAGGTGATTTGGTTACAATCACAACAAATGATGAGTTGAGATTTGCAGAAGCTTCAGGTGATCCACAGGGGTCTCTTAGATTGTATGTTGCAGAAGTTAGTCCAGATCATGAGCCGCTGTATGAAGGAATGGAGAATGAGGAGGAGAAAGGTGGAGACATGGAAAATGGGTTCTCGTGTATTGATGACTGGATAGTACAGTTTGCACGATTGTTCAAGAACTATGTTGGGTTCAATTCTGATTCATACTTGGATCTTCATGAGCTTGGGATGAAGCTGTACTCAGAGGCGATGGAGGATGCTGTTACAAGTGAAGAAGCCCAAGAACTTTTTGAAATTGCTGCTGACAAGTTTCAAGAGATGGCAGCTTTGGCCTTGTTCAATTGGGGAAATGTTCACATGTCCATGGCAAGAAAGAGGGTGTTCCTCACGGAAGATGGATCAAGGGAATCTATTATTGCTCAGATTAAAACTGCATATGAGTGGGCACAGAAAGAATATATCAAGGCAAGTTTGAGGTATGAAGAAGCTCTAAAAATCAAACCCGACTTCTATGAAGGTCATCTTGCACTTGGGCAGCAGCAGTTTGAGCAAGCAAAACTTTCTTGGTATTATGCAATTGGGTGCAAGATTGATTTAGAGTCAGGGCCTTCCATGGAGGTCCTACAGCTGTATAACAAGGCTGAGGACAGCATGGAGAGGGGCATGCTGATGTGGGAGGAGATGGAGGAGCGGCATATATCTGCCAGTGACGTTGCAGAGCAGGCTGCAAACATGAAGTCACAGATATACCTCTTGTGGGGTACATTGCTTTATGAGCGTTCAATTGTGGAATTCAAGTTGGGGCTACTGTCGTGGGAAGAATGTTTGGAGGTTGCAGTTGAAAAGTTTGAACTTGCTGGAGCTTCTCCAACTGATATAGCTGTTATGATAAAGAACCATTGTTCCAATGGAGCTGCACTGGAAGGTTTGGGATTCGACATTAATGAGATTGTACAAGCATGGAATGAAATGTATGATGCTAAGAGGTGGCAGATTGGTGTTCCATCTTTTCGATTGGAACCATTGTTTCGTCGGCGGGTTCCAAAACTTCATCATATCTTGGAGCATATTTGA 2016 43.9 MCYYRNWSLSTRASLHPTGKKKTPGPSKPGDASAKHGKTTAFDEDTAVFITMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDIAYLRSNMASCYMLMGIGEYPRAINQCNLAIEVSPKYSKALLKRAKCYEALNRLDLALKDVNSILSIESNNLAALEIADRVKKAIEEKGIKVDDKEIVMAAEYTESPPYKAVKQKTKKKKSNKTEVKKLLDKAVVKPVDKAVVKPVDKAVVEENVGVEEQVVTVSRPVKLVFNEDIRWAQLPVNCSIRLVRDIVQDRFPSLKGILVKYRDHEGDLVTITTNDELRFAEASGDPQGSLRLYVAEVSPDHEPLYEGMENEEEKGGDMENGFSCIDDWIVQFARLFKNYVGFNSDSYLDLHELGMKLYSEAMEDAVTSEEAQELFEIAADKFQEMAALALFNWGNVHMSMARKRVFLTEDGSRESIIAQIKTAYEWAQKEYIKASLRYEEALKIKPDFYEGHLALGQQQFEQAKLSWYYAIGCKIDLESGPSMEVLQLYNKAEDSMERGMLMWEEMEERHISASDVAEQAANMKSQIYLLWGTLLYERSIVEFKLGLLSWEECLEVAVEKFELAGASPTDIAVMIKNHCSNGAALEGLGFDINEIVQAWNEMYDAKRWQIGVPSFRLEPLFRRRVPKLHHILEHI* 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6153540 6159242 + Vvi4g554 Vvi4g554 785333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g554 671 Pfam PB1 domain 255 331 IPR000270 GO:0005515
Vvi4g554 671 CDD PB1 257 330 - -
Vvi4g554 671 PANTHER PROTEIN CLMP1 17 671 IPR044517 -
Vvi4g554 671 SUPERFAMILY CAD & PB1 domains 254 344 - -
Vvi4g554 671 PANTHER PROTEIN PHOX4 17 671 - -
Vvi4g554 671 Gene3D Tetratricopeptide repeat domain 51 180 IPR011990 GO:0005515
Vvi4g554 671 ProSiteProfiles TPR repeat profile. 53 86 IPR019734 GO:0005515
Vvi4g554 671 SUPERFAMILY TPR-like 50 167 IPR011990 GO:0005515
Vvi4g554 671 SUPERFAMILY TPR-like 379 500 IPR011990 GO:0005515
Vvi4g554 671 Gene3D Tetratricopeptide repeat domain 368 574 IPR011990 GO:0005515
Vvi4g554 671 ProSiteProfiles PB1 domain profile. 254 333 IPR000270 GO:0005515
Vvi4g554 671 MobiDBLite consensus disorder prediction 14 38 - -
Vvi4g554 671 SMART tpr_5 53 86 IPR019734 GO:0005515
Vvi4g554 671 SMART tpr_5 91 126 IPR019734 GO:0005515
Vvi4g554 671 SMART tpr_5 451 484 IPR019734 GO:0005515
Vvi4g554 671 SMART tpr_5 127 160 IPR019734 GO:0005515
Vvi4g554 671 Gene3D - 247 333 - -
Vvi4g554 671 SMART PB1_new 254 333 IPR000270 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g554 - - - vvi:100252640 1177.54
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g554 Vvi11g569 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g554 . . . . . . . . . . Cma01g01489 . . . . . . . . . . . . . Cla05g01710 Cam05g1825 Cec05g1837 Cco05g1895 Clacu05g1810 Cmu05g1696 Cre05g1825 . . . . Lsi04g02102 . . . . . . Bda13g01251 . . . . Sed13g1998 Cmo01g01543 . . . . . . . Bhi09g02959 Tan01g3607 Cmetu07g2079 . Hepe01g1993 . . . . . . . . . . . . Cme07g00090
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006619 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 2 37