Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g556 ATGAATTCAGGTTCTGCAGACAGAGGAACGGCTATTGGAGTGATGTCTCTCAGTAAAGAGCTGGTCTTCTTGATCTTACAGTTCCTTGATGAGGAAAACCTAAAAGAAACTGCTCACATTTTGGAGCGGGAAACAGGTTATTTCTTTGACATGAAGTACTTTGAGGGCCTGGCACTTAGTGGGAACTGGGATGAGGTTGAAAGATATCTCTCTGGTTTCACAAAAGTGGAGGACAACAAGTTTTCACTCAAGATCTATTTTGAAATCAGAAAGCAGAAGTTCCTTGAGGCATTGGATAACCATGATGGCTCCAAGGCTTTAGGTATCCTTGTGAATGATCTGAAAGTTTTTGCCTCATACAATGAAGATCTGTACAAGGAGATGACTCAGCTTCTGACTACAGATGATTTCAGGAAACACGAATCTCTCTCCACATATAGGGACACAAATTCTGCAAGAATAATCATGATGAAGGATCTGAAGAAAGTTATTGAGGCAAATCCCCTCTTTCGTGGTAAACTAAAGTTTCCTAATTTCAGAAGTCAAAGGTTGCGACGTCTCATTAACCAAAGCTTGAATTGGCAGCATGTACATTGTTCCTATCCTCAACCAGACCCCGTCATAAAAACTCTTTTTTTGGATCATGTTTGTCAACCACTAGACAATCATTCAATTGTAAACAATCCTCCGCCTTCGGAAGTTGCATCAGCACCAGTTCCAACTTCCCCCTCCAGTTGTACTTTTACTCCATCTACTGTGACTCATTCTGCAGTTTCTGCTGGAACTGTTGGTCTCTGTGCACCAAGAAACCCAGCTGAAACTTTGGAGGAACTCAAGGATTCAGAAAGTTTGTCTAAAAGTGGGACACTTGAGACTTTGGATGAGGTAACATCAGGATTCACTTATCCAGGCCAAGGTCAAAGTTCAGTATTCAGATTACCTGATGACTTTCCAAAGTTAGTTCAGAAGACATTGAATGAAGGATCATCTCCAGTGAGCATGGATTTTCATCCTGTTCAATCAACCCTTCTTATAGTTGGAACCATCGTTGGGGACATAGGTTTGTGGGAAGTTCTTTCTGGAGAGAAGTTACTATCCAGAAGTTTTAAGGTTTGGGATATTGGAGCTTGTTCACCGATTTTCAAGGCAGCTATGGTTAAAGACCCATGTGTATCAGTTAAGTGTATACGATGGAGCCCTGATGGTTCAATATTTGGGGTTGCATATTCAAAACATATTTTACAATTATACTCCTATGGTGGTGCCAGTGACGTTCAGCCAAAATTGGAGTTTGACGCTCATGTTGGTGGTGTAAATGACCTCGCCTTCTGTGCCCCTGATAAGAAACTTATGGTCATAAGCTGTGGTGATGACAAGATTGTTAAGGTGTGGGATGCAGTTAACGGTGTCAAAATGTTCACTTTTGAGGGTCATGAGGCCTCTGTATATTCTGTCTTACCTCACACCAAGGAGAGAATTCATTTTATCTTTTCTACATCAGTGGATGGCAAGATAAAAGCATGGTTGTATGACAATTTGGGAGCGAGAGTTGATTTTGATGCTCCAGGTCATTGGTGCACAACAATGGCATACAGTGATGATAATAAAAGGATTTTTTCATGTGGCACTAGTAAAGATGGAGAGTCATTCCTTGTTGAATGGAATGAGACTGAAGGTTCTTTGAAGAGAATTTACCAGGGACTTCGGAAGCCTTCAATTGGGATCCTGCAATTTGATACTGCTAAGAACCAGTTTTTGGCTGTTGGCGATGACCATTTAATCAAACTTTGGGATATGGACAACCTTGAACTCTTGACAACTATTGATGCAGATGGAGACCTACCAGCAAGTCCATGTGTTCGCTTCAACAAGGAGGGAACGTTATTAGCTGTTTTTGCAAAGGGAAACAGAATCAAAATCTTGGCAAATGATTCCAGTCCTAAGTTGCAGCAAACTTCTGAAAATAATTACCTTGCTTCCTCTAGTCTCTCTGAAATACTGAGTGAGCTTTCAATCAGCCAAATTTCATCTGTTGGTAGCGCTGGCATGGAAGATGGTGGTCTTCCTGTGAATGAAGGAACAAGGAGCTTGGAGAATGTGAAACCCATTTTAACTGAGGAAGTCAATGGGAATATCTCTAACATCTATTATCCTCCTCAGTTCCAGTTCTTGAGTCTTCCTGCTAAGACAAACAAGGTGTCAAGTTTGATCTACAACAATGCAGGTGATTCCATTTTGGCATTAGGATCAAATGTTCATGTGGTTTGGAAATGGCCGCAAAATGACCTTAATATGAGTGGAAAGGCAACCACCAAGATTCCCCCTCAATTATGGAAACCAAAAGGCAGGTCACAACTGATTGGTGATTACAGTGCTGGAACCAACCCTGCAGACGTTGTAGCATGTTTTGTTTTTTCCAAAAATGATTCATATGGCATATCAGCTTCAGGAGGGAAGATTTCTGTGTTCAACATGCTGACATATAAGAAAATGACAACTTTTATGTCTTCTCCACCAATGGCAACATTTCTTGCTCTTCATCCTCAAGATAACAATATAATTGCAGTAGGCCTGGATGATTCCACAATTGTGATTTACAATGTTCGCAATGATGAGGTTGAGAACAAGCTTAAGGGCCACTTTGGAAAGATCACTGGCCTTGCCTTCTCAGAGGTTCTGAATGTACTTGTTTCATCAGGAGCAGATGCTCAGATTGTTGTGTGGAATTATGATGGATGGGAAAGGGTGAACAGCAGATCCATGCAGATCCCTGATGAGGGTCCACCACTGTCAGACATCCGAATCCAGTTTCACCAGGATCAAATTCACTTCCTTGCTGTGCATGACACTTGTCTTGCAATATATGAAGCAAAGAAACTAGAATGCATTGGACAGTGGGTCACAGGAAAATTTTCGGCAGAAATCTCGCATGCAACATTTTCTTCTGATAGCCAGTTAGTATATGCAATCTTTCTAGATGGAACGGCTTCTGTATTTAACACTCCAAATTTCCACCTGCAATGTCGGATTGATTTCAATGCTTGTATTCCTCTCGATATCAGATGTGATGTATACCCACTTGTGGTTGCCGCTCATCCAAATAACCCAAACCAGTTTGCGGTTGGCTTATCTAATGGTGGCATCCATATCATTGAGCCCCTTGAATCTGTAGGGAAATGGACAGCATTGCCACCAGTTTCTCTGAAATTATCCTTTTCTCAGGAGGAACTGTTACAGGTAACTTTATTTGAAAGAGGGAAGAGTGCTGGCTACCTGGCAAGACATTTTGGGGAAGCCCCTGTAACTTTTGAAAAGGAGAATAGATGGTGTGACCCTTTATCCCTTGACTTTATATGCAATTATATGGTTACTCTTCAGAAGTCATCTTTTGAAAAGAGCATCTTTAGTTCTTAA 3414 41.24 MNSGSADRGTAIGVMSLSKELVFLILQFLDEENLKETAHILERETGYFFDMKYFEGLALSGNWDEVERYLSGFTKVEDNKFSLKIYFEIRKQKFLEALDNHDGSKALGILVNDLKVFASYNEDLYKEMTQLLTTDDFRKHESLSTYRDTNSARIIMMKDLKKVIEANPLFRGKLKFPNFRSQRLRRLINQSLNWQHVHCSYPQPDPVIKTLFLDHVCQPLDNHSIVNNPPPSEVASAPVPTSPSSCTFTPSTVTHSAVSAGTVGLCAPRNPAETLEELKDSESLSKSGTLETLDEVTSGFTYPGQGQSSVFRLPDDFPKLVQKTLNEGSSPVSMDFHPVQSTLLIVGTIVGDIGLWEVLSGEKLLSRSFKVWDIGACSPIFKAAMVKDPCVSVKCIRWSPDGSIFGVAYSKHILQLYSYGGASDVQPKLEFDAHVGGVNDLAFCAPDKKLMVISCGDDKIVKVWDAVNGVKMFTFEGHEASVYSVLPHTKERIHFIFSTSVDGKIKAWLYDNLGARVDFDAPGHWCTTMAYSDDNKRIFSCGTSKDGESFLVEWNETEGSLKRIYQGLRKPSIGILQFDTAKNQFLAVGDDHLIKLWDMDNLELLTTIDADGDLPASPCVRFNKEGTLLAVFAKGNRIKILANDSSPKLQQTSENNYLASSSLSEILSELSISQISSVGSAGMEDGGLPVNEGTRSLENVKPILTEEVNGNISNIYYPPQFQFLSLPAKTNKVSSLIYNNAGDSILALGSNVHVVWKWPQNDLNMSGKATTKIPPQLWKPKGRSQLIGDYSAGTNPADVVACFVFSKNDSYGISASGGKISVFNMLTYKKMTTFMSSPPMATFLALHPQDNNIIAVGLDDSTIVIYNVRNDEVENKLKGHFGKITGLAFSEVLNVLVSSGADAQIVVWNYDGWERVNSRSMQIPDEGPPLSDIRIQFHQDQIHFLAVHDTCLAIYEAKKLECIGQWVTGKFSAEISHATFSSDSQLVYAIFLDGTASVFNTPNFHLQCRIDFNACIPLDIRCDVYPLVVAAHPNNPNQFAVGLSNGGIHIIEPLESVGKWTALPPVSLKLSFSQEELLQVTLFERGKSAGYLARHFGEAPVTFEKENRWCDPLSLDFICNYMVTLQKSSFEKSIFSS* 1138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6200585 6211153 - Vvi4g556 Vvi4g556 785335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g556 1137 Gene3D - 515 774 IPR015943 GO:0005515
Vvi4g556 1137 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 315 1065 IPR027728 GO:0006355
Vvi4g556 1137 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 16 288 IPR027728 GO:0006355
Vvi4g556 1137 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 47 105 IPR006595 -
Vvi4g556 1137 PANTHER PROTEIN, PUTATIVE-RELATED 16 288 - -
Vvi4g556 1137 PANTHER PROTEIN, PUTATIVE-RELATED 315 1065 - -
Vvi4g556 1137 ProSiteProfiles Trp-Asp (WD) repeats profile. 431 474 IPR001680 GO:0005515
Vvi4g556 1137 SUPERFAMILY WD40 repeat-like 706 1050 IPR036322 GO:0005515
Vvi4g556 1137 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 877 909 - -
Vvi4g556 1137 ProSiteProfiles Trp-Asp (WD) repeats profile. 877 918 IPR001680 GO:0005515
Vvi4g556 1137 SMART WD40_4 870 909 IPR001680 GO:0005515
Vvi4g556 1137 SMART WD40_4 959 1000 IPR001680 GO:0005515
Vvi4g556 1137 SMART WD40_4 424 465 IPR001680 GO:0005515
Vvi4g556 1137 SMART WD40_4 512 555 IPR001680 GO:0005515
Vvi4g556 1137 SMART WD40_4 783 824 IPR001680 GO:0005515
Vvi4g556 1137 SMART WD40_4 468 509 IPR001680 GO:0005515
Vvi4g556 1137 SMART WD40_4 318 357 IPR001680 GO:0005515
Vvi4g556 1137 SMART WD40_4 558 598 IPR001680 GO:0005515
Vvi4g556 1137 SMART WD40_4 827 867 IPR001680 GO:0005515
Vvi4g556 1137 SMART WD40_4 379 418 IPR001680 GO:0005515
Vvi4g556 1137 ProSiteProfiles LIS1 homology (LisH) motif profile. 17 49 IPR006594 GO:0005515
Vvi4g556 1137 Gene3D - 305 514 IPR015943 GO:0005515
Vvi4g556 1137 SMART ctlh 47 105 IPR006595 -
Vvi4g556 1137 Gene3D - 794 1061 IPR015943 GO:0005515
Vvi4g556 1137 SUPERFAMILY NHL repeat 309 421 - -
Vvi4g556 1137 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 389 919 IPR011047 -
Vvi4g556 1137 Pfam WD domain, G-beta repeat 876 909 IPR001680 GO:0005515
Vvi4g556 1137 Pfam WD domain, G-beta repeat 427 465 IPR001680 GO:0005515
Vvi4g556 1137 SMART Lish 17 49 IPR006594 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g556 - - - vvi:100254390 2081.99
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g556 Vvi9g610 ECH
Vvi4g556 Vvi9g654 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g556 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g00085
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0071676 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1