Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g566 ATGTATGTGTGTGGTGTCACCGCATACGATCTCAGCCACATTGGCCATGCTCGTGTTTATGTATCCTTCGATGTTCTCTACAGATACCTGAGGCATTTGGAGTATGAAGTGAATTATGTTCGAAACTTCACTGATGTAGATGACAAGATAATTGCTAGAGCAAATGAAATGGGGGAGGATCCAATAAATTTGAGCAGACGATACTGCCAAGAGTTCCATGTGGATATGACATATCTTCACTGCTTGCCTCCTTCGGTGGAGCCATGTGTCTCTGATCACATGCCCCAAATCATTGATATGATTAAGCAGATTATTGATAATGATTGTGCCTACAGAGTTGAGGGGGATGTGTATTTCTCGGTTGACAAATTCCCAGAATATGGCCGATTATCTGGGCGAAAAGTAGAAGATAATCGAGCAGGTGAACGGGTTGCTGTTGACTCTAGGAAGAAAAATCCTGCAGATTTTGCTTTATGGAAAGCTGCAAAGAAGGGGGAACCCTTTTGGGACAGTCCATGGGGGCCTGGGAGACCTGGATGGCATATTGAGTGCAGTGCCATGAGTGCTGCTTATCTGGGTTACTCATTTGACATTCATGGTGGAGGGATGGACCTTGTGTTTCCCCACCATGAAAATGAAATTGCTCAGAGTTGTGCTGCCTGTAAACAGAGTAATATAAGCTATTGGATACACAATGGATTTGTCACCATTGATTCAGAGAAAATGTCAAAATCCCTTGGAAACTTCTTCACAATACGACAGGTTATAGACATTTACCATCCGCTAGCTTTGAGGCTTTTCTTGATAGGAACCCACTATCGTTCCCCAATCAACTACTCAGATGTGCAGCTTGAAAGTGCCTCTGACCGTGTTTTCTACATTTATCAGACGCTACACGACTGTCAAAATGCTATGGACCAGGATGATATGACAAAGAAGGATTCTGTCCCACCTCATATTTTGGATTGCATCAATAAATTTTACAATGATTTTCTGACTTCAATGTCAGACGATCTTCATACTCCTGTTGTTTTGGCTGCTTTATCTGACCCATTGAAAACCATCAATGATCTGCTACATACTCGTAAGGGAAAGAAGCAAGAACTGCGACTAGAATCACTGGCAGCTCTTGAAAAGGTTATCAGAGATGTTCTTACCATTTTAGGATTGATGCCTGCTAGTTACTCTGAGGCTTTGCTGCAGCTGAGAGAAAAGGCATTGAAGCGCTCCAAGTTAACAGAAGATCACATTTTGCAAAAAATTGAAGAAAGGACCATGGCAAGGAAGAACAAAGAGTATGAAAAATCAGATGCAATTAGGAAAGATTTGGCTGCTGTAGGAATTGCTCTCATGGATAGCCCAGATGGGACAACTTGGAGACCAGCTATTCCCCTTGCACTGCAAGAGCAGGTTGCTGCAACTTGA 1425 42.67 MYVCGVTAYDLSHIGHARVYVSFDVLYRYLRHLEYEVNYVRNFTDVDDKIIARANEMGEDPINLSRRYCQEFHVDMTYLHCLPPSVEPCVSDHMPQIIDMIKQIIDNDCAYRVEGDVYFSVDKFPEYGRLSGRKVEDNRAGERVAVDSRKKNPADFALWKAAKKGEPFWDSPWGPGRPGWHIECSAMSAAYLGYSFDIHGGGMDLVFPHHENEIAQSCAACKQSNISYWIHNGFVTIDSEKMSKSLGNFFTIRQVIDIYHPLALRLFLIGTHYRSPINYSDVQLESASDRVFYIYQTLHDCQNAMDQDDMTKKDSVPPHILDCINKFYNDFLTSMSDDLHTPVVLAALSDPLKTINDLLHTRKGKKQELRLESLAALEKVIRDVLTILGLMPASYSEALLQLREKALKRSKLTEDHILQKIEERTMARKNKEYEKSDAIRKDLAAVGIALMDSPDGTTWRPAIPLALQEQVAAT* 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6381531 6389548 - Vvi4g566 Vvi4g566 785345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g566 474 Pfam tRNA synthetases class I (C) catalytic domain 1 287 IPR032678 -
Vvi4g566 474 Gene3D - 279 461 - -
Vvi4g566 474 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 315 460 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi4g566 474 Gene3D HUPs 1 278 IPR014729 -
Vvi4g566 474 PANTHER CYSTEINYL-TRNA SYNTHETASE 1 472 IPR024909 -
Vvi4g566 474 PRINTS Cysteinyl-tRNA synthetase signature 1 12 IPR024909 -
Vvi4g566 474 PRINTS Cysteinyl-tRNA synthetase signature 37 46 IPR024909 -
Vvi4g566 474 PRINTS Cysteinyl-tRNA synthetase signature 166 184 IPR024909 -
Vvi4g566 474 PRINTS Cysteinyl-tRNA synthetase signature 197 218 IPR024909 -
Vvi4g566 474 PANTHER CYSTEINE--TRNA LIGASE, CHLOROPLASTIC/MITOCHONDRIAL 1 472 - -
Vvi4g566 474 CDD CysRS_core 1 280 IPR032678 -
Vvi4g566 474 SMART dalr_2_4 330 399 IPR015273 GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423
Vvi4g566 474 Pfam DALR domain 331 392 IPR015273 GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423
Vvi4g566 474 TIGRFAM cysS: cysteine--tRNA ligase 1 460 IPR015803 GO:0004817|GO:0005524|GO:0006423
Vvi4g566 474 Hamap Cysteine--tRNA ligase [cysS]. 1 462 IPR015803 GO:0004817|GO:0005524|GO:0006423
Vvi4g566 474 SUPERFAMILY Nucleotidylyl transferase 1 287 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g566 K01883 CARS, cysS; cysteinyl-tRNA synthetase [EC:6.1.1.16] - vvi:100245851 973.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g566 . . . . . . . . . . Cma01g01519 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00018 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006585 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 2 1 38