Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g571 ATGCTAGTGACTTCTGGAGGACAGTTTCCATCATTCCATTTCCTAATTATATTGTTTATTATTGTAACAACTGTTCGAAGTGGGTCTGCAAGGATTACCAGTACTTTTACTCGTTCTGAATGGCCATCCACTGATATCCCTCTGGATAATGAAGCTTTTGCAATTCCAAAGGGTCACAATGCTCCACAGCAAGTGCATATCACCCAAGGTGACTATGACGGAAAGGCTGTCATAATTACGTGGGTTACAACTGATGAACCAGGGTCAAGTAAAGTGCTATACGGCACATTGGAGAAGAAATATGATTTTAGTGCCGAGGGCAATGTGACAAACTACACATTTTCCAATTATTCATCTGGCTATATCCATCATTGTCTTGTTCATGGCCTTGAGCCTGACACCAAGTATTATTACAAGATTGGAGATGGAGGTTCTTCTCGCGAATTTTGGTTTCAAACACCTCCAAAGATTGATCCAGACACTTCCTACACTTTTGGAATTATCGGTGATTTGGGTCAAACATATAATTCTCTTTCTACACTCGAGCATTACATGCAGAGTGGAGCACAGACTGTCTTATTTGTCGGTGATCTCTCTTATGCTGATAGATATGAATTCAATGATGTTGGTGTTAGATGGGATTCATGGGGCCGGTTTGTTGAGCGAAGTGCTGCATATCAGCCATGGATTTGGACTGCTGGAAATCATGAAGTAGAGTACATGCCGAACATGGGTGAAGTTCTTCCTTTTAAGTCATATCTGCATAGATATGCTACACCTTATATGGCCTCCCAAAGCAGCAATCCTCTTTGGTATGCTGTCAGACGTGCATCCGCTCATATAATTGTGCTATCAAGTTATTCTCCATTTGTGAAATATACACCTCAATGGAAGTGGCTACGTGAAGAGCTAAAGAGAGTGGACAGAGAGAAGACACCTTGGCTAATTGTTCTCATGCATGCCCCCATGTATAGTAGCAATGTAGCCCACTATATGGAAGGTGAGAGTATGCGAGCTGTTTTTGAAAGTTGGTTCGTCCATGCAAAGGTTGATCTTATCTTTGCAGGTCATGTTCATGCCTATGAAAGATCGTATCGCATCTCAAATATACACTATAATATAACAAATGGCGATCGGTATCCTATACCTGACAAATCAGCTCCAGTGTACATAACTGTTGGAGATGGAGGGAATCAGGAAGGTCTTGCTGGAAGGTTTGTGGACCCACAACCAGAGTACTCTTCATTCCGTGAAGCCAGTTATGGTCATTCTACATTGGAGATCAAGAATAGAACCCATGCATTCTACCATTGGAATCGAAATGATGATGGGAAAAAAGTACCAACTGATTCTGTCGTATTCTACAATCAGTACTGGGCAAGGAATCTACAGAGGAGGAGGCTGAAGAGGAACCATATCAGGACTATTGAAAGGGGCACTGCCACCTTCTGTTAG 1455 42.06 MLVTSGGQFPSFHFLIILFIIVTTVRSGSARITSTFTRSEWPSTDIPLDNEAFAIPKGHNAPQQVHITQGDYDGKAVIITWVTTDEPGSSKVLYGTLEKKYDFSAEGNVTNYTFSNYSSGYIHHCLVHGLEPDTKYYYKIGDGGSSREFWFQTPPKIDPDTSYTFGIIGDLGQTYNSLSTLEHYMQSGAQTVLFVGDLSYADRYEFNDVGVRWDSWGRFVERSAAYQPWIWTAGNHEVEYMPNMGEVLPFKSYLHRYATPYMASQSSNPLWYAVRRASAHIIVLSSYSPFVKYTPQWKWLREELKRVDREKTPWLIVLMHAPMYSSNVAHYMEGESMRAVFESWFVHAKVDLIFAGHVHAYERSYRISNIHYNITNGDRYPIPDKSAPVYITVGDGGNQEGLAGRFVDPQPEYSSFREASYGHSTLEIKNRTHAFYHWNRNDDGKKVPTDSVVFYNQYWARNLQRRRLKRNHIRTIERGTATFC* 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6434195 6447365 + Vvi4g571 Vvi4g571 785350

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g571 484 CDD MPP_PAPs 159 456 IPR041792 -
Vvi4g571 484 Gene3D - 158 465 IPR029052 -
Vvi4g571 484 SUPERFAMILY Purple acid phosphatase, N-terminal domain 42 155 IPR008963 GO:0003993|GO:0046872
Vvi4g571 484 Pfam Iron/zinc purple acid phosphatase-like protein C 387 446 IPR025733 -
Vvi4g571 484 PANTHER PURPLE ACID PHOSPHATASE 5 474 - -
Vvi4g571 484 SUPERFAMILY Metallo-dependent phosphatases 160 462 IPR029052 -
Vvi4g571 484 Pfam Calcineurin-like phosphoesterase 164 361 IPR004843 GO:0016787
Vvi4g571 484 Gene3D - 61 157 - -
Vvi4g571 484 PANTHER ACID PHOSPHATASE RELATED 5 474 IPR039331 GO:0003993
Vvi4g571 484 Pfam Purple acid Phosphatase, N-terminal domain 62 153 IPR015914 GO:0003993|GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g571 K22390 ACP7; acid phosphatase type 7 - vvi:100252468 1020.38
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g571 Vvi11g546 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g571 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004228 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 2 2 43