Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g572 ATGTGTAGAGAGAGAAAGAGTATTATGGCGCTGTTTCGGAAGTTCTTCTATCGGAAGCCGCCAGACGGGCTCTTGGAGATCTCTGAGAGGGTTTATGTGTTTGATTGCTGCTTTACCACGGATGTTCTGGAAGATGAGGAATATAAAGTTTACATGGGAAGCATAGTGGGTCAACTTCGTGAGCACTTCCCTGATGCTTCATTCATGGTGTTCAACTTCCGAGAGGGAGACAGCCAAAGCCAGATTTCTAGTATTTTGTCTGAGTATGATATGACTGTGATGGATTATCCTCGACATTATGAGGGTTGCCCATTACTCACAATGGAGATGATCCATCACTTTTTAAGATCAAGCGAAAGCTGGCTCTCACTTGGGCAGCAGAATGTACTCTTGATGCATTGTGAGCGAAGTGGGTGGCCAATTTTGGCTTTCATGTTAGCTGCCCTCTTGATTTATAGGAAGCAGTACACCGGGGAACAGAAAACTTTGGACATGATTTACAAGCAAGCACCTCGTGAGCTCTTGCAGCTGATGTCTCCACTAAATCCATTGCCTTCCCAACTGAGGTACCTGCAGTATGTATCAAGAAGGAATGTAGGCTCAGAGTGGCCTCCACTGGATAGGGCACTTACGTTGGACTGTGTCATTCTCAGAATCATTCCTAATTTGGATGGAGAGGGGGGTTGCCGTCCAATATTTAGGATATATGGTCAGGATCCTTTTATGGTTGCTGATCGGACTCCCAAAGTCCTGTTCTCGACCCCGAAGAGGAGCAAAACTGTTCGGCATTACAAGCAGGAAGATTGCGAGCTAGTTAAAATTGACATCCATTGCCATATTCAAGGGGATGTTGTGCTTGAGTGTATTAGCTTGGAAGAAGATATGGAACGTGAAGAAATGATGTTTAGGGTCATGTTTAACACAGCTTTCATACGATCAAATATTCTGATGCTTAACCGTGATGAAATCGATATTTTATGGAATTCTAAGGATCAATTCCCCAAAGACTTCAGAGCAGAGGTTCTATTTTCGGAGATGGATTCGGGTAATTCCCTTATTACAATTGATTTGGAAGGTGTTGAGGAGAAAGACGGTCTTCCTATGGAAGCATTTGCAAAAGTTCAAGAGATCTTCAGCAATGTTGATTGGCTAGATCCAAAGACAGATGTGGCATTCAATGTGCTCCAGCAAATCACTGCATCAAATGTTCTCCAGGAATTGGAGACTGATTCTGCTCAGAGTGGAGAAACTGTTGGTTTGTTGCAGGAATTAAGTCCTGAAAAGGTTGAAGATAAACCAAAACCTAAGGCAGCAGAAAACAATATCAGCAGTACCACATCCATGGCTTTGGGGAAACAACATATGACATCAGCTAAACCATCTGTAGATGCAAATTTGATTAGAAGGAAGATTGATCCCCAAGAACTGCAGGTTGCACTTCAACGGCCTGCTCAATCTAAGATCATATCCCAGCGGATACCTCAGACTCCTATATCTAATCCAGTTTCAAACAGTAACTCCTTGCAAGGATCACCTGTGCCTATCTCAAGATATCATAGTGCACCGTCAGCCCTTGGCATTACAGCTCTGTTGCATGATCATGCTGCACCTATAGGTCAAGAACCTGGAGCCTCCTTACAGGGAAGACATCAGTCATCACTGATGGCTCCTCGACCACCACCACTACCACATTCCTTTTCAGGGAAATGTCAATCTTCCACCATGAACTCGGTGGTTCCTGTTGGTCCTCCTCCACCTCCTCCACCTCCTTCATGTTCTGGGTCTGCCTCAAGTCCCAACATTACATCTACAGCCCCACCATCTCCTCCTTCCCCTGGTTTTATGCCAAAGGATTCTAGGTCCAATAATTTTCCACATGCTCCACCACCTCCACCTGCTCCTTTTGGCAAAGGGTTATCAAAAGCTTCTGGTGCCCAAGTTGCTGGCAGCAATGGAAATATACCTCCATTTCCTGGTCCACCTTCTGCTCAGTTTGGTGGAAAGGGTCGAGGCCTATCACGAGCTGGTCCAAAAATTCAGGCTCAACCCAAAAAGGCTTCTTTGAAGCCATATCATTGGTTAAAGTTAACAAGGGCCATGCAAGGGAGCTTATGGGCAGAGACGCAACGACCTGAGGAAGCTTCCAAGGCTCCTGAGTTTGACATGTCAGAACTAGAAAGTCTTTTCTCAACAGCTGTTCCAAATTCGGAAAATGGGGGCGTGGGTGGAAAATCAAATCGTCGTGCCTCAGGACCTAAATCCGAGAAAGTCCAGCTGATTGACCTTAGGCGAGCATATAACTGTGAAATCATGCTTACAAAAGTTAAGATGCCATTGCCTGATTTGATGATGAATATACTTTCAGAGAATAAAAGGATTACAGCCAATGATGAGGGATCCAAGGGGTCCTTCTTATTTGGCAGAGCCAAAGAAAACAGAGAGGAAGATCTAAAGGCCCTAATAACTCTTACACAAACTCGTAGAGATAGAGAGAGGGAACATCTAAATCAGGGAGAGAGTGCCGTGTCAGCCTGTGGAGGCGGTTCTACCCTCTGTCCCGCTGTGATCTATGAGGCAGGGGATGCAGTGGAGGGTAAAGTAGGGTCAGCTGATGGACGGGTTAGAGAGGGTGATGGGATTTTTTTGAATAAGTTGGAAAGCCCAGCTTTTGGGCCAAGTATCGGGCCAAAAGGGCCAGTTCATGGGGTGTCTCTGGGCCTGTTTCATTTAAGTGGGTCAAGGCTGGGGCCTTTTAAAGAAACCCAGGAGGTATTGGGCTGTGACTTAAGGCCCAATGTCTCTTTCGGGGAGAAGGGAGAGGGTTTTGGGCCTGTAGGGCCTGCTGCTGCGGAAGGAGGAGATTTAAATGGGGAAGGCATCTCGAGCCCTCGAGCTAGGGCACAGTCGCCAGAAGTGGAGAAAGGCTCAGGAGATGTTGATCTCCTTGTCCGTGGGGAAGCGCCTTCGGCCTCACGTCCTACGGCTAAGACGTCTAGCTCAGAGAGGCAAGCTTTTATAGTGGAGGACCCTATCGTCGACATTTTGAGAGCTGCGTCGCCGTCAGAAGCCTCTGCGGAGCCGAAAAATGGGTCGTTGACTGATGATGCGCTGCGTGATGAAGCCTCCAGCATTATTCTGGCAGATGGCAACAATGGGGAGATGGGTTCAGAGGGGGAGAGATCCTCGAGTGTTGAAAATGGTCCTAAGAGAATACAATTCTATGTTCTCTCATCAGGAAACAATAGAGAAAAAGTAAACAGGCTGCAAATTGATAATAGTGAGGATAAACCTTCACAAAATGAAAACTCCATTATGATTCACAATTTGATTGGAGCTTATAATTGCGAGTATTGGATCTTTTTTGGAGTTTATATTTTGGCTCTTACCTTTGGATCTCATTACAACATAGTTTTTTATATGGTTTTCATTTTAAAGAACATCACAAAACAAAACTTACACCTCAACTCCCACCAGGCATCATTAAACTCCAAGAGGGATTTCCTTGAATTTGTGTTAAAAGCCACCATTTGTGCATATAAAGGAATTGACCACAATTTCCTTGGAGTGCTTACATCCATACCCGCAGTTGACAACCCATACCTCAACCCATATAACATATTATTATGCTCTGTCTACAATTGCCAAGCAAGTCACTGGGAAGCCTCCACACTCTCCTCTCCCTCCACATTCATAAACAAGTTCACCCATGTAAAGATACTTTTCATGTTTGATTCCTTGATCCGTGTTAAAAGCTCAGTCCTTGCCTTGGATGATTCAGCATTAGATGTTGATCAAGTTGATAACCTCATAAAGTTCTGTCCAACAAAAGAAGAGATTGAACTACTCAAGGGTTACAATGGTGACAAGGGAAACTTGGGAAAATGTGAACAGTTTTTCTTAGAATTAATGAAAGTGCCACGGGTGGAGTCCAAGCTAAGAGTTTTCTCATTTAAGATACAATTTCGTATCCAGGTTTCTGACCTCAAAAATAATTTGAATGTCGTAAATTCAGCATCTGAAGAGATCAGGAATTCGGTCAAATTGAAAAGAATCATGCAAACTATCCTTTCACTGGGAAATGCTTTAAACCATGGAACAGCAAGAGGTTCTGCTATTGGATTTCGATTGGATAGTCTCCTTAAACTCACTGATACACGAGCCCGGAACAACAAGATGACTCTCATGAATTATCTTTGTAAGGTGCTTGCTGAAAAGCTACCAGAACTTCTAGATTTTCCGAAAGACCTTTTGCATTTGGAGGCCTCAACAAAGATACAATTGAAATATCTGGCAGAGGAAATGCAAGCTATTAGTAAAGGGCTTGAGAAAGTTGTCCAAGAACTGACTGCATCAGAAAATGATGGTCCTGTGTCTGAAAACTTTTGCAAGACTTTAAAGGAGTTTCTTGTTTTTGCTGAGGCTGAAGTGAGGTCTTTAGCTTCACTTTATTCTGGGGTGGGTAGAAATGCAGATGCATTGGCTCTTTATTTTGGAGAAGATCCAGCTCGTTGCCCATTTGAGCAAGTTGTTTCTACTCTTCTCAACTTTGTGAGAATGTTTACACGGGCACATGAGGAAAACTGCAAGCAGCTTGAATTTGAGAGGAAGAAAGCACAGAAAGAAGCAGAAAGCGAGAAGATTAAGATTAATCACAAACAGGAGTCTGAGCACTTGGTACGGACTTCCATCAAGACAACCAAACATTACAGGACAGATAATTACACAGTTTTAAGGGAGATGGCGGAGCTGGAAGTCAAGTCATGTTCCAAGATCCACTTTGTAAGATATGTAGGAAGATTTTGTTGTAAAAATATCACTAATAGCTTTGTTTTCCTTTTTTATATTTTAGTTTGTCTTGTTTCTTTGTTATATTATTCCTTTGTGTACATTTTTTTAAAGTTAAATAGGGATGTAAATGTTGATAAATGA 4929 43.44 MCRERKSIMALFRKFFYRKPPDGLLEISERVYVFDCCFTTDVLEDEEYKVYMGSIVGQLREHFPDASFMVFNFREGDSQSQISSILSEYDMTVMDYPRHYEGCPLLTMEMIHHFLRSSESWLSLGQQNVLLMHCERSGWPILAFMLAALLIYRKQYTGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSRRNVGSEWPPLDRALTLDCVILRIIPNLDGEGGCRPIFRIYGQDPFMVADRTPKVLFSTPKRSKTVRHYKQEDCELVKIDIHCHIQGDVVLECISLEEDMEREEMMFRVMFNTAFIRSNILMLNRDEIDILWNSKDQFPKDFRAEVLFSEMDSGNSLITIDLEGVEEKDGLPMEAFAKVQEIFSNVDWLDPKTDVAFNVLQQITASNVLQELETDSAQSGETVGLLQELSPEKVEDKPKPKAAENNISSTTSMALGKQHMTSAKPSVDANLIRRKIDPQELQVALQRPAQSKIISQRIPQTPISNPVSNSNSLQGSPVPISRYHSAPSALGITALLHDHAAPIGQEPGASLQGRHQSSLMAPRPPPLPHSFSGKCQSSTMNSVVPVGPPPPPPPPSCSGSASSPNITSTAPPSPPSPGFMPKDSRSNNFPHAPPPPPAPFGKGLSKASGAQVAGSNGNIPPFPGPPSAQFGGKGRGLSRAGPKIQAQPKKASLKPYHWLKLTRAMQGSLWAETQRPEEASKAPEFDMSELESLFSTAVPNSENGGVGGKSNRRASGPKSEKVQLIDLRRAYNCEIMLTKVKMPLPDLMMNILSENKRITANDEGSKGSFLFGRAKENREEDLKALITLTQTRRDREREHLNQGESAVSACGGGSTLCPAVIYEAGDAVEGKVGSADGRVREGDGIFLNKLESPAFGPSIGPKGPVHGVSLGLFHLSGSRLGPFKETQEVLGCDLRPNVSFGEKGEGFGPVGPAAAEGGDLNGEGISSPRARAQSPEVEKGSGDVDLLVRGEAPSASRPTAKTSSSERQAFIVEDPIVDILRAASPSEASAEPKNGSLTDDALRDEASSIILADGNNGEMGSEGERSSSVENGPKRIQFYVLSSGNNREKVNRLQIDNSEDKPSQNENSIMIHNLIGAYNCEYWIFFGVYILALTFGSHYNIVFYMVFILKNITKQNLHLNSHQASLNSKRDFLEFVLKATICAYKGIDHNFLGVLTSIPAVDNPYLNPYNILLCSVYNCQASHWEASTLSSPSTFINKFTHVKILFMFDSLIRVKSSVLALDDSALDVDQVDNLIKFCPTKEEIELLKGYNGDKGNLGKCEQFFLELMKVPRVESKLRVFSFKIQFRIQVSDLKNNLNVVNSASEEIRNSVKLKRIMQTILSLGNALNHGTARGSAIGFRLDSLLKLTDTRARNNKMTLMNYLCKVLAEKLPELLDFPKDLLHLEASTKIQLKYLAEEMQAISKGLEKVVQELTASENDGPVSENFCKTLKEFLVFAEAEVRSLASLYSGVGRNADALALYFGEDPARCPFEQVVSTLLNFVRMFTRAHEENCKQLEFERKKAQKEAESEKIKINHKQESEHLVRTSIKTTKHYRTDNYTVLREMAELEVKSCSKIHFVRYVGRFCCKNITNSFVFLFYILVCLVSLLYYSFVYIFLKLNRDVNVDK* 1643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6448228 6495905 - Vvi4g572 Vvi4g572 785351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g572 1642 Pfam C2 domain of PTEN tumour-suppressor protein 208 345 IPR014020 -
Vvi4g572 1642 Coils Coil 1640 1642 - -
Vvi4g572 1642 SMART it6_source 1193 1599 IPR015425 -
Vvi4g572 1642 Gene3D - 204 348 - -
Vvi4g572 1642 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1158 1546 IPR015425 -
Vvi4g572 1642 MobiDBLite consensus disorder prediction 938 1003 - -
Vvi4g572 1642 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 20 195 IPR029021 -
Vvi4g572 1642 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1248 1547 - -
Vvi4g572 1642 Gene3D Protein tyrosine phosphatase superfamily 19 199 IPR029021 -
Vvi4g572 1642 MobiDBLite consensus disorder prediction 579 594 - -
Vvi4g572 1642 Coils Coil 1521 1555 - -
Vvi4g572 1642 SUPERFAMILY Formin homology 2 domain (FH2 domain) 691 793 - -
Vvi4g572 1642 PANTHER FORMIN-J 9 1562 - -
Vvi4g572 1642 MobiDBLite consensus disorder prediction 538 686 - -
Vvi4g572 1642 Gene3D Formin, FH2 domain 673 843 IPR042201 -
Vvi4g572 1642 ProSiteProfiles C2 tensin-type domain profile. 207 346 IPR014020 -
Vvi4g572 1642 MobiDBLite consensus disorder prediction 490 515 - -
Vvi4g572 1642 MobiDBLite consensus disorder prediction 731 755 - -
Vvi4g572 1642 Gene3D Formin, FH2 domain 1241 1555 IPR042201 -
Vvi4g572 1642 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 209 346 IPR035892 -
Vvi4g572 1642 Pfam Formin Homology 2 Domain 681 795 IPR015425 -
Vvi4g572 1642 Pfam Formin Homology 2 Domain 1248 1520 IPR015425 -
Vvi4g572 1642 SMART PTEN_C2_2 205 345 IPR014020 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g572 - - vvi:100249142 1127.08