Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g573 ATGTCGGATGAAGAGCACCACTTCGAGTCCAAGGCTGACGCCGGTGCCTCCAAAACCTACCCTCAACAAGCTGGCGCCATCCGCAAGAACGGCTACATCGTCATAAAGGCTCGTCCCTGCAAGGTGGTGGAAGTTTCTACCTCCAAAACAGGGAAGCATGGACATGCCAAGTGTCACTTTGTGGGGATAGATATATTCAATGGCAAAAAACTTGAAGATATTGTCCCATCATCCCACAATTGTGATGTTCCACATGTTACCCGAACTGACTATCAGTTGATTGATATTTCTGAAGATGGATTTGTGAGTCTTTTAACTGATAGCGGTGGTACGAAGGATGATTTGAGGCTTCCCACTGATGACAATCTGCTTACCCAGATTAAGGATGGATTTGCTGAAGGAAAGGACCTTGTTGTGACGGTCATGACGGCCATGGGAGAAGAGCAGATCTGTGCACTCAAGGACATTGGCCCCAAGAACTAA 483 47.2 MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKARPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTDSGGTKDDLRLPTDDNLLTQIKDGFAEGKDLVVTVMTAMGEEQICALKDIGPKN* 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6510449 6514013 + Vvi4g573 Vvi4g573 785352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g573 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vvi4g573 160 CDD S1_eIF5A 86 156 - -
Vvi4g573 160 Gene3D - 86 159 IPR012340 -
Vvi4g573 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Vvi4g573 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vvi4g573 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Vvi4g573 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vvi4g573 160 MobiDBLite consensus disorder prediction 1 21 - -
Vvi4g573 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vvi4g573 160 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Vvi4g573 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vvi4g573 160 Gene3D - 1 85 IPR014722 -
Vvi4g573 160 TIGRFAM eIF_5A: translation elongation factor IF5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g573 K03263 - vvi:100247352 328.946