Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g574 ATGAATCTTTTAGAACTTGGTGAGGATGCAAGTCTACAAACAGCACCACAAGAAGTGCAGAATAATCGTAGTGAATATGGAAAGCATTTTGATCTTAATTCTTTACCACCAGGGTATAGATTTAATCCCACCGATGCAGAGATAATAGTTTTCTACTTGAGGAAGAAGGTTGATCATCAACCATTGCCACCGAACAAGATCATAGAAGTCAATCTCTATGCTTATGATCCTGAGGAACTTGCAGGTTTCTTCCGTCTGGGAATGGTGAATGGTTCTATTTCACGCCAAGGGACAAGAAATATCGGAATGGGCAACGTCCCAATAGGTCAGTCGGAGGTGGATACTGGAAGGCCACCGGAGCTGATAAAGAGATCAAATTTGAGGATCGAACGAAGAACTGGTGTCAATGATATGAGGGTACGTATATATCAAGTCCCTTTTTCATTTAGTCTATATTGTATCTTAAGATGTTTCTTGTTTGTTGCAGTTGGATGA 495 40.4 MNLLELGEDASLQTAPQEVQNNRSEYGKHFDLNSLPPGYRFNPTDAEIIVFYLRKKVDHQPLPPNKIIEVNLYAYDPEELAGFFRLGMVNGSISRQGTRNIGMGNVPIGQSEVDTGRPPELIKRSNLRIERRTGVNDMRVRIYQVPFSFSLYCILRCFLFVAVG* 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6519205 6520061 - Vvi4g574 Vvi4g574 785353

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g574 164 PANTHER NAC DOMAIN-CONTAINING PROTEIN 102-LIKE 25 81 - -
Vvi4g574 164 Pfam No apical meristem (NAM) protein 36 82 IPR003441 GO:0003677|GO:0006355
Vvi4g574 164 Gene3D NAC domain 44 100 IPR036093 GO:0003677|GO:0006355
Vvi4g574 164 SUPERFAMILY NAC domain 29 84 IPR036093 GO:0003677|GO:0006355
Vvi4g574 164 ProSiteProfiles NAC domain profile. 35 164 IPR003441 GO:0003677|GO:0006355
Vvi4g574 164 PANTHER NAC TRANSCRIPTION FACTOR 56 25 81 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g574 - - - vvi:104879057 170.629
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g574 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14765 PF02365 NAM 1.80E-10 No_clan Vvi TF