Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g576 ATGAAGCGCTCTGGTGCATTGAAGTGCCTCGTCTTCATTGTTCACTCTCACAAAAGCATTTTCTGTTCTCTTCACGCAGAGTGCGTTAATCTCAATATTTCAACTCTAATGGGGGCATCTGATGCCAAGGGAGATTTGGGCATGAGCAGTAGTATGGGTGAAAAGCTTTCAAACGGAGTCCAAATGGAAATAGATGATGATCTGATGGGCTCAATCGAGATAGACGACTTAAACAAAGAATATTTGAAAACATTTTGCAAAAAGGTTGCGGTATCATTCTTTAATGAGTATGGACTCATTCAGCATCAGATCAACTCCTTCAACGACTTCATCAAAAATGGAATTCAAAGGGTTTTTGATTCTTTTGGCGAGATCCCTGTGGAGCCTGGGTATGACCCATCTAAGAGGGGAGAGGGTGATTGGAGATACGCTTCTGTGAGGTTCGGGAAGGTCACCCTTGAACGGCCGAGGGTATGGGCTGGTGAATCAGATGGTAAGGAGTCCCTGAATTTTTTGCCGAGACATGCACGTCTTCAGAACATGACGTACTCATCTCGGATGAAAGCTCAAGTTCATTTCCAGGTATATACTCAGAAACTTGTAAGAAGTGACAAGTACAAAACTGGAAAAGACAACAAGTATGTTGAGAAGAAGGTTATATTCGAAGATAACAGGGACATATTAATTGGGAGGATCCCTGTGATGGTGAAGTCAGAACTATGTTGGATGAATGGTGTCGAGAGAGGTGACTGTGAATATGATCATGGAGGATATTTTTTGATCAAGGGTGCAGAGAAAACATTCATTGCACAAGAACAGATTTGTTTGAAGAGACTGTGGGTTTCCAGTAATCCAACTTGGATGGTTGCATACCGGCCAATCTGGAAAAGGAAAAGAGTATATGTTAAATTAGAACCTCCAAAAGATGAAAATAATAGAGGAGGAGAAAAAGTTCTTACAGTGTATTTTTCATCAACAGAGATTCCCATTTGGATATTGTTTTTTGCGCTTGGTGCATCGTCAGACAAGGAAGTTGTTGATTTGATTGATTTCAACATTGATGATGCTGGTATTTCAAATATTCTTGTTGCATCTATTCATGAAGCGGACAGGGAAGCAGAAAAGAAAGGCATGTACTTCCGTAGACAAGGCAATGCTATCAGCTTTGTAGATAAACTTGTGAAAAGTTGTAAATTTCCTCCTGGAGAAAGTATTCAAGAATGCATTAGCAAGTATTTGTTTCCCAACTTTAGTGGCGTCAAGCAAAAGGCTCGCTTTCTTGGGTATATGGTGAAGTGTCTTCTACAAGCCTATACTGGGCGCAGAAAATGTGATAACAGAGATGATTTCAGAAACAAAAGATTAGAATTGGCTGGTGAGCTGCTTGAGCGAGAGCTTAGAGTGCACATTAGACATGCTGAAAGGCGCATGGTAAAAGCTATGCAGAGAGAACTTTATGGAGATCGTGACCTGCGACCTATTGAAAATTATCTGGATGCTTCCATTATCACCAATGGTCTTTCCAGGGCATTCTCAACTGGGCAATGGTCCCATCCTTTCAAGAGGATGGAAAGGATATCTGGTGTAGTGGCAACTCTTAGACGAACAAATCCCTTGCAGATGACAGCTGACATGAGGAAAACACGTCAGCAGGTCCAATACACAGGAAAGGTTGGGGATGCCAGATACCCACACCCTTCTCACTGGGGGAAGGTTTGCTTTCTCTCTACTCCGGATGGTGAAAATTGTGGGCTTGTAAAAAATTTGGCCATTACAGGACTTGTCTCAACAGAGGTATTGGATCCATTGGTTGATAAATTGTTTGATTGTGGAATGGAGAAACTGGTAGATGATACCTCTACCAAGCTGTCTGGAAAGAATAAAGTTTTTCTGGATGGTGACTGGGTTGGAGTATGCGAAGATCCCATTTCATTTGTTGTGGAGCTAAGAACTAAACGGCGGCACAAGGAATTGCCTCAACAGGTGGAAATCAAAAGAGACGAACAACAAGGAGAAGTTCGCATTTTTTCTGACGCTGGAAGGATTCTACGTCCTCTCTTAGTAGTTGAGAATTTAAAGAAGGTTAAAACATTTAAAGGGGATGATTTTACTTTCCAGTCTCTTTTGGACAAGGGAATCGTGGAGCTCATTGGAGCTGAGGAAGAAGAAGATTGCTCTACAGCATGGGGCATTAAATACCTCTTAAAGGGACATGATGACCCACCGGTGAAATACACACATTGTGAACTTGATATGTCTTTTTTATTAGGGTTAAGTTGTGGAATAATCCCTTATGCAAATCATGACCATGCAAGGAGAGTACTATACCAGTCTGAGAAGCACTCTCAACAGGCTATTGGTTTTTCCACAACGAACCCTAATATTAGAGTGGATACCCTCTCTCACCAACTATACTACCCTCAGAGGCCACTTTTTCGGACAATGATTTCTGATTTGCCAAGGCCTGAATACTTCAATGGGCAGATTGCCATTGTTGCAGTTAATGTTCACCTGGGGTACAACCAAGAGGACTCATTGGTAATGAACCGGGCTTCATTAGAGCGTGGTATGTTTCGTTCAGAGCACATAAGAAGTTATAAATCTGAGGTCGACAATAATGAATCATTGGACAAAAAGCGAAAGTCCGAGGACTCTGTACATTTTGGAAAGATGCAGAGTAAAATTGGACGTGTTGACAGCCTTGATGATGATGGTTTTCCATTCATCGGTGCAAACCTGCAGAATGGTGATATTGTCATTGGAAGGTGTGCAGAATCTGGGGTTGATCACAGCATAAAACTGAAGCATACTGAGAGGGGCATGGTTCAAAAGGTTGTGGTGTCAGCAAATGATGATGGAAAAAATTTTGCTGTAGTATCTCTGAGACAGGTCCGAACTCCATGCCTTGGAGACAAGTTTTCAAGCATGCATGGGCAAAAGGGTGTTCTGGGGTTTCTAGAGTCCCAGGAGAACTTCCCTTTCACAATACAAGGAATAGTTCCAGATATTGTAATAAACCCACATGCATTTCCTTCACGTCAGACTCCTGGTCAATTGCTAGAGGCTGCTTTGGGAAAGGGGATTGCCTGTGGTGGTTTGCTGAGACATGCCACCCCTTTCTCCACCCTCTCTGTGGATGCAATAGCAGATCAACTTCACAGGGCTGGATTTTCAAGATGGGGACATGAAAGGGTGTACAATGGACGCACTGGAGAAATGCTTCGCTCACTCATATTTATGGGGCCAACATTCTACCAGCGCCTGATTCACATGGCTGAGGATAAAGTAAAGTTCCGCAACACGGGGCCAGTCCACCCGCTCACCCGTCAGCCAGTGTCGGATCGGAAGCGCTTTGGTGGGATCAAATTTGGGGAGATGGAGCGCGACTGCCTCATTGCTCACGGTGCTGCAGCAAATCTACATGAACGTCTCTTCACCCTCAGCGACTCAGCCTATATGCACATCTGTCGGAGATGCAAGAATATATCGAATGTGATCCAGCGTTCTGTGGCGGGTGGGCGGAAGGTAAGGGGCCCGTATTGTCGATACTGCGAGTCTTCTGAGGAAATAGTGAAGGTGAACGTGCCATATGGGGCGAAGTTGTTGTGCCAGGAGCTCTTCAGCATGGGCATATCTTTGAAGTTTGAGACCCAGCTGTGTTAA 3663 43.65 MKRSGALKCLVFIVHSHKSIFCSLHAECVNLNISTLMGASDAKGDLGMSSSMGEKLSNGVQMEIDDDLMGSIEIDDLNKEYLKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRGEGDWRYASVRFGKVTLERPRVWAGESDGKESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDENNRGGEKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGHDDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMISDLPRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLRHATPFSTLSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGAKLLCQELFSMGISLKFETQLC* 1221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6537827 6551330 + Vvi4g576 Vvi4g576 785355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g576 1220 Pfam RNA polymerase beta subunit 98 493 IPR007644 GO:0003677|GO:0003899|GO:0006351
Vvi4g576 1220 Pfam RNA polymerase Rpb2, domain 2 314 456 IPR007642 GO:0003677|GO:0003899|GO:0006351
Vvi4g576 1220 Gene3D - 761 1103 IPR037033 GO:0003677|GO:0003899|GO:0006351
Vvi4g576 1220 Pfam RNA polymerase Rpb2, domain 6 761 1117 IPR007120 GO:0003677|GO:0003899|GO:0006351
Vvi4g576 1220 ProSitePatterns RNA polymerases beta chain signature. 970 982 IPR007121 GO:0003677|GO:0003899|GO:0006351
Vvi4g576 1220 Gene3D - 445 664 - -
Vvi4g576 1220 Gene3D - 92 274 - -
Vvi4g576 1220 Pfam RNA polymerase Rpb2, domain 4 629 690 IPR007646 GO:0003677|GO:0003899|GO:0006351
Vvi4g576 1220 Gene3D RNA polymerase Rpb2, domain 2 286 444 IPR037034 GO:0003677|GO:0003899|GO:0006351
Vvi4g576 1220 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 59 1217 IPR015712 GO:0003899|GO:0006351|GO:0032549
Vvi4g576 1220 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 79 1217 - -
Vvi4g576 1220 Pfam RNA polymerase Rpb2, domain 3 533 592 IPR007645 GO:0003677|GO:0003899|GO:0006351
Vvi4g576 1220 Gene3D RNA polymerase alpha subunit dimerisation domain 1104 1218 - -
Vvi4g576 1220 CDD RNA_pol_B_RPB2 99 1216 IPR015712 GO:0003899|GO:0006351|GO:0032549
Vvi4g576 1220 Pfam RNA polymerase Rpb2, domain 7 1119 1217 IPR007641 GO:0003677|GO:0003899|GO:0006351
Vvi4g576 1220 Pfam RNA polymerase Rpb2, domain 5 705 751 IPR007647 GO:0006351
Vvi4g576 1220 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA 59 1217 - -
Vvi4g576 1220 Gene3D - 791 966 IPR014724 GO:0003899
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g576 - - K16252 vvi:100256013 2389.76
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g576 Blo01g01419 . Bda01g00661 . . Bpe02g00534 . Bma01g02175 . . Cma01g01667 . Car09g00358 . . . . . . . . . . . Cla05g01679 Cam05g1794 Cec05g1802 Cco05g1858 Clacu05g1781 Cmu05g1666 Cre05g1796 . . Cone17ag0982 . Lsi04g01338 . . . . . . . . . . . Sed13g1963 Cmo01g01716 Cmo09g00414 Cma09g00409 . Car01g01281 . . Cpe02g00323 Bhi09g03010 Tan01g3560 Cmetu07g2167 . Hepe01g1964 Mch11g0501 . . . . . . . . . . . Cme07g00123
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010517 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 32