Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g577 ATGTCGAAATTCGAATACCCAATGCTCCCACGCTCAGATATCATAGCAATCCTTAACGAATCCAAAATCGCAACAGTCTATGAGGACAATCTCATCAATCCCAACCCCGATTTCGTCTCCGACCTCTACACCAGGCTTCTCATTCACCTCGATTCTCTCCAGGAAGATCCTGGGCAAATCGAATTTGCCGCATTGGAGCAGCTTGAGAACCCAGATTGGCACCGTGATTCTGTTCGTGTCATGAATTTGTACAGCAAGATTAAGGAGCTTGTGGCTTCTCTGGAGTGCCCTAAGAAGTTTACCCTCAAAGATCTTATACGCCCCGATAGGGACAGGACCGAGCGGTTTCTCGGCACCATACTGAATTTCTTTCTTCACAAAGATTCAAAAATGAATGACCTAAGACCAATTGTAGAGGAATTGACTCTTCTAGATGAGCAGCGTAACCAGTTCAAAGATAGAATTTCCCAGTTGGATGCAGAGATTGCAGACTGCAGTGAAGCAAGAGAAAGAGAGAGGCCGCTTGTTGAAGAGGTAGAGGTAAAAGTTAAAGAACTGCGTCAGACCATTCCAAGCCTCAACAATCAGCAGATGTCATTGAGGGCATCTTTTCGAAAAATGAAGGAGAAGGTCACAGAAATGGATGAGAAGATTTCTAGCGCTGAGTTTGCCCTTGTACAAAGTGTCCAAGAAAATGCCAATCTACGTTCTAAAATCATCCAATCACCAGATAAACTACAGAGGGCTTTAGAGGAGAAGAAATCAGATCGAATTGAGGTGAAGAATGCTGAAAAATCAGCAATGCAATCTTTTCAGGAGAAGTCTGCTATTCTTGAGGTTTACACAAAGGCTGGCAAGAAAATGTCCAAGCATTTTGCCCAAATGCAGACTATACAAGAACAGGTGAATTCTGCCAAAGCCATTGAAAAAGATCTCAAGGTTATAAAAACTAAGCTGAGTGAAGAGGGAGTCTTGGAAAAGTCTCTTGAGGCCAAACTTGTTGAATGGCAAGGAAAAGTGGAACAGTTGGATGACCTAAGAAAGCAATTAGAAAAAGAACGAGATTTTAAGTGTGAGGAGGCTGCTAAAGAATTGAATAATGTCAAGTTGGCAGTGGAATCGAGTAGGCATGAGTTGGAAGCAAGGCAAAAGAAGGTTGAAGCCCAAGCAGCGGAGGTTGATGGTATAACTTTAAAGATTAATTCAGTAAAAGAATCTGGAGCAGCTAAACAGCAAGAGTTGATCAGCAAGGGTGAAGAGATTATGAAAGAGTTCCACCTATATGCGAACTCTATTGGGGTCTTGCTGCCAAGGATTCAAGTGGAGACAGAAGTTGATCAAGAAATGTGCACATCCAACTAA 1362 42.58 MSKFEYPMLPRSDIIAILNESKIATVYEDNLINPNPDFVSDLYTRLLIHLDSLQEDPGQIEFAALEQLENPDWHRDSVRVMNLYSKIKELVASLECPKKFTLKDLIRPDRDRTERFLGTILNFFLHKDSKMNDLRPIVEELTLLDEQRNQFKDRISQLDAEIADCSEARERERPLVEEVEVKVKELRQTIPSLNNQQMSLRASFRKMKEKVTEMDEKISSAEFALVQSVQENANLRSKIIQSPDKLQRALEEKKSDRIEVKNAEKSAMQSFQEKSAILEVYTKAGKKMSKHFAQMQTIQEQVNSAKAIEKDLKVIKTKLSEEGVLEKSLEAKLVEWQGKVEQLDDLRKQLEKERDFKCEEAAKELNNVKLAVESSRHELEARQKKVEAQAAEVDGITLKINSVKESGAAKQQELISKGEEIMKEFHLYANSIGVLLPRIQVETEVDQEMCTSN* 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6555517 6566325 + Vvi4g577 Vvi4g577 785356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g577 453 Coils Coil 246 266 - -
Vvi4g577 453 Coils Coil 141 168 - -
Vvi4g577 453 PANTHER MEMBRALIN/KINETOCHORE PROTEIN NUF2 1 441 - -
Vvi4g577 453 Coils Coil 176 196 - -
Vvi4g577 453 Gene3D Ncd80 complex, Nuf2 subunit 1 163 IPR038275 -
Vvi4g577 453 Coils Coil 326 378 - -
Vvi4g577 453 PANTHER KINETOCHORE PROTEIN NUF2 1 441 - -
Vvi4g577 453 Pfam Nuf2 family 4 141 IPR005549 GO:0000776|GO:0031262
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g577 K11548 NUF2, CDCA1; kinetochore protein Nuf2 - vvi:100268045 845.884
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g577 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010132 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 2 1 1 1 2 1 1 1 2 0 2 31