Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g578 ATGGCCGACCACCGCTCTCAAACCCTAGCCCCAGTGCCTCACCCCTCCCACTATGATCACGATTGCCCTTCCTTCTCTGACCTCTTCAACGGCGTTACTCACTCTGAGTTCCCCACCATTCAAAATGGACAATTTGGGATGTCCCATCAAGAAGTTTTGGCAAGTGTGACAGCTAAAGCTGCTCAAGCTCCGGTTCAGATGGATCAACCTGTGTGTATGCATTCTTCTACTGAATCGTCATCTGTTCCAAAATCTGAGATATCCATGCCAAATTCAACACCAGGTGTAGAAAACCCATTAGCATTACCCCAAGATAATGCCTCCATCAAACAAAGAGCGGACCAGAAAGACTTTTCTGATCATAAAACCCAGCTTGCTGATACTGTTGTTATGAACATCCCCAATGATGGGTATAACTGGAGGAAGTATGGTCAGAAACAAGTGAAGAGCACTGAAAGTTCTAGAAGCTATTACAGATGCACATATTCTGATTGTGATGCGAAGAAGAAGGTTCAACAATGTCACCAGTCTGGTTTTGTAACTGGAGTTATTTATAAGGGTTTTCATAACCATGATCCACCTCCAAAGATTAGATGCACTCAGCTAAGGAAGTCTGCAGCTGTTAGTCCTGTTGAAGGGAGTGATACTGTATATCCTACAGCACAAAAGCTCGGAAATTCAGATCTATCCAATTATAAGAGTGAACCTGGAAAAGCATCAGTAGCAATGCCTGAATTGGAGCGACAGAACTCCAGCAATTCTGATAGCAATACAGGTATTAAAGCTGAGGAGGAAATTGGTGATGTGGTAGAGCGAAAACGAAGGATGAAACCCCAAGAACCACTGGTGCTTCCATCAAGACGGAAACAGAGAAGTTCATGTAGTTCAAATGAGATTGTCAAAAAAGAAGTTGGGGAATGTGGGGATGAACAAAAACCTAAACAAAGGATGAAAGAAGGAGGTTTAGCATGTTCAGCTCCCCTCTTTAAAACTATTAAGGAGCCTAAAATTGTTGTCCATGCTGCTGGTGATGTGGGGATCTCAAGTGATGGCTACAGGTGGCGCAAGTATGGCCAAAAAATGGTGAAAGGGAATCCTCATCCCAGGAGCTATTACAGGTGCACATCTGCTGGTTGCCCGGTCCGGAAGCATGTGGAGAGGGATACAGATGACAAAACAACCATCATAGTAACATATGAGGGGAAACATGACCATGACAGGCCGGTACCTAAGAAGCGGCATAGTCCACGAACTGCTGCTTTTCTTATTGCGGCTGCTGCTGCTATGAACAACAACCAATGCAAGAAAACAGAAACTTTGGCAAATCAAAGATCTTCAAACCAGCAGTCAGCTGACATGGAACATGATTTAACATGTCAGAAGGCTTTGGAACTTGGAGGTGAGAAGGCATTGGAGTCAGCTCGAACTCTTTTGAGTATTGGAATTGAAATCAAGCCTTATATTTTGTTAAATTCTGGCTTTGTTATTAGACATCTCTGTTTTTCCCTAGCTTCTGGGAGCATCAGGCTTTCTTCTCCTCGGGCATCGGAGATGGAGAAAGAAGCCAGTTGCTGTGTGATGGATCCATCCTGA 1593 44.07 MADHRSQTLAPVPHPSHYDHDCPSFSDLFNGVTHSEFPTIQNGQFGMSHQEVLASVTAKAAQAPVQMDQPVCMHSSTESSSVPKSEISMPNSTPGVENPLALPQDNASIKQRADQKDFSDHKTQLADTVVMNIPNDGYNWRKYGQKQVKSTESSRSYYRCTYSDCDAKKKVQQCHQSGFVTGVIYKGFHNHDPPPKIRCTQLRKSAAVSPVEGSDTVYPTAQKLGNSDLSNYKSEPGKASVAMPELERQNSSNSDSNTGIKAEEEIGDVVERKRRMKPQEPLVLPSRRKQRSSCSSNEIVKKEVGECGDEQKPKQRMKEGGLACSAPLFKTIKEPKIVVHAAGDVGISSDGYRWRKYGQKMVKGNPHPRSYYRCTSAGCPVRKHVERDTDDKTTIIVTYEGKHDHDRPVPKKRHSPRTAAFLIAAAAAMNNNQCKKTETLANQRSSNQQSADMEHDLTCQKALELGGEKALESARTLLSIGIEIKPYILLNSGFVIRHLCFSLASGSIRLSSPRASEMEKEASCCVMDPS* 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6569930 6576637 + Vvi4g578 Vvi4g578 785357

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g578 530 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 30 462 - -
Vvi4g578 530 SUPERFAMILY WRKY DNA-binding domain 344 408 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g578 530 ProSiteProfiles WRKY domain profile. 343 408 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g578 530 MobiDBLite consensus disorder prediction 218 259 - -
Vvi4g578 530 Gene3D WRKY domain 120 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g578 530 Gene3D WRKY domain 333 409 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g578 530 MobiDBLite consensus disorder prediction 218 234 - -
Vvi4g578 530 Pfam WRKY DNA -binding domain 350 405 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g578 530 Pfam WRKY DNA -binding domain 135 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g578 530 SUPERFAMILY WRKY DNA-binding domain 130 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g578 530 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 30 462 IPR044810 GO:0003700
Vvi4g578 530 ProSiteProfiles WRKY domain profile. 129 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g578 530 SMART WRKY_cls 134 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g578 530 SMART WRKY_cls 348 407 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g578 530 MobiDBLite consensus disorder prediction 72 102 - -
Vvi4g578 530 MobiDBLite consensus disorder prediction 245 259 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g578 - - - vvi:100262898 967.992
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g578 Vvi11g498 ECH
Vvi4g578 Vvi9g560 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g578 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006824 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14766 PF03106 WRKY 2.90E-21 CL0274 Vvi TF