Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g58 ATGCAGGCTTGTAGTGGAACTGCTGCTATGGGTTCTCTGCAACAGCCCATTTGGATTAAGGGGTCAAGTTTTGCTCCAAATGGGTCTACTGTCAATGGGTTCCCACACCAAATTAAACTGAACTCGGTTAAGCCATGTAGATCTTATATCAAAGGAAGCTTGGTTACTGGGAAGCCACCTTCCTCTGTGTCTGTCACTGTGCCTGGAAATGGGGATAGTGGAGTCAATTTTATTGACCATGGCTTGAATGAAGCTGATCCTGAAGTGTGTGCAATTATTTACAAGGAAAAGCAACGGCAAATGAAAAGCTTAGAACTTATTGCCTCAGAGAATTTCACATCCCGGGCAGTGATGGAAGCTGTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAGGTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAAGAGGGCTTTGGCAGCATTCCACTTAGATGGAAAGAAGTGGGGTGTCAATGTTCAACCATTGTCTGGTTCTCCAGCTAACTTTGAAGTATACACTGCCCTTCTCAATCCACATGACAGAATCATGGGCTTGGACTTACCTCATGGGGGCCACTTGTCTCATGGTTTCATGACTCCTAAAAGACGGGTATCAGGCACATCAATTTATTTTGAGTCTATGCCTTATCGACTTGATGAATCTACAGGTCTTGTTGATTATGACATGCTTGAGAAAACAGCTAATCTTTTTCGACCAAAACTCATTATTGCTGGTGCTAGTGCTTATCCTCGAGATTTTGATTATCCTCGTATGAGGAAGATTGCAGATGGTGTTGGTGCTTTTCTCATGATGGATATGGCTCACATTAGTGGACTTGTTGCTGCTTCTGTGGTTGCTGACCCCTTTGAGTACTGTGATATTGTGACAACAACAACACACAAGTCTCTTAGAGGTCCTAGAGGTGGCATGATCTTCTTCAAGAAAGATTCTGTTCTGGGAGTTGACTTAGAATCTGCCATCAACAATGCTGTTTTTCCAGGTTTACAGGGTGGTCCGCATAACCACACAATCGGGGGACTTTCAGTCTGCTTAAAGCATGCCCAATCCCCAGAATTCAAGGCTTACCAGAACCAGGTAGTGTCAAACTGTAGAGCTCTTGCTGGCCGGTTAATCGAATTGGGATATAACCTGGTTTCCGGGGGAAGTGATAACCACCTTATTCTTGTGGATCTTAGGCCATTGGGTATTGATGGGGCTCGGGCGGAGAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTGGCGACAAGAGTGCCCTCGTGCCTGGTGGCATTCGCATCGGATCACCTGCGATGACTACCAGGGGATTCTCCGAGAAGGAATTCATAGCAACTGCAGATTTCATTCACGAGGGCGTGCAGCTATCTCTTGAAGCAAAAAAATCGGTTTCAGGATCAAAGCTCCTAGACTTCATGAAGTTTGTAACGTCCCCAGATTTCTCTTTGATAGACCGGGTGTCGGATTTGCAGAGGAGAGTCGAAACTCTCACAACCCAGTTCCCAATGCCTGGATTATAA 1587 45.18 MQACSGTAAMGSLQQPIWIKGSSFAPNGSTVNGFPHQIKLNSVKPCRSYIKGSLVTGKPPSSVSVTVPGNGDSGVNFIDHGLNEADPEVCAIIYKEKQRQMKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEFIDELETLCQKRALAAFHLDGKKWGVNVQPLSGSPANFEVYTALLNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTANLFRPKLIIAGASAYPRDFDYPRMRKIADGVGAFLMMDMAHISGLVAASVVADPFEYCDIVTTTTHKSLRGPRGGMIFFKKDSVLGVDLESAINNAVFPGLQGGPHNHTIGGLSVCLKHAQSPEFKAYQNQVVSNCRALAGRLIELGYNLVSGGSDNHLILVDLRPLGIDGARAEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFIATADFIHEGVQLSLEAKKSVSGSKLLDFMKFVTSPDFSLIDRVSDLQRRVETLTTQFPMPGL* 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 676238 680999 + Vvi4g58 Vvi4g58 784837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g58 528 Pfam Serine hydroxymethyltransferase 82 472 IPR039429 -
Vvi4g58 528 PIRSF SHMT 75 528 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vvi4g58 528 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 305 321 IPR019798 GO:0030170
Vvi4g58 528 Gene3D - 111 376 IPR015421 GO:0003824
Vvi4g58 528 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 38 528 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vvi4g58 528 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 38 528 - -
Vvi4g58 528 Hamap Serine hydroxymethyltransferase [glyA]. 81 527 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vvi4g58 528 CDD SHMT 84 476 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vvi4g58 528 Gene3D Aspartate Aminotransferase, domain 1 86 526 IPR015422 GO:0003824
Vvi4g58 528 SUPERFAMILY PLP-dependent transferases 81 527 IPR015424 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g58 K00600 glyA, SHMT; glycine hydroxymethyltransferase [EC:2.1.2.1] - vvi:100250728 1060.44
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g58 . . . . . . . . . . . . . . Sed07g1476 Cpe07g00154 . Bhi04g00909 Tan02g2503 . . Hepe10g0407 . Lcy13g1458 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00180 . . . . . . . . . . . Cla08g01180 Cam08g1645 Cec08g1219 Cco08g1340 Clacu08g1340 . Cre08g1126 . Csa02g02227 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003954 1 3 1 1 1 2 2 2 2 1 2 2 1 2 1 1 2 2 0 2 1 1 1 1 1 1 1 3 2 1 44