Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g585 ATGCAAACCCATTTGAAGGACTTCCTATCTCTCTGCGACCCTCAAGTCATTGCCCAATTGCCACCTCTTCAACGGGCTCAAGCTCATCTCACGCTCGCCAAGGCCACTACCACCCTCTTTGCATTGAACTTGAGGTGTAAGGGCGTGAACCCAGATGACCATCCTATTAAATCAGAACTGGAGAGATTGAGGTTGTATGAAGACAAACTAGAGCGGTTAATGGACTCAAATAAAGAACCATTGCGACCTTCTACTATCCTAAATCATCAGGCAGCAACCCGCTTCATTGAACATTCTTTGCCTGATCTTACGCCAGAGCAAAAGCAAAGTATGAGGGAGATCAGCAGGGGAGAGGGGCCAAAGATTAAGCATTCAGAGAGGAGTGGTCAAAAGAAGAGGAAGTATTCATCTGATAAACAATCTATTCAAAATGCTGCCCAGGCTTTTCTTGAAAAGGCAGCCCGTGAGCTTCTTGGTGATAATAAAGATGGTTTTAAGGGACCTCTACAAGTCAACTCCTCCGATGAAGATGACAAGCCTGACAACTGA 549 45.54 MQTHLKDFLSLCDPQVIAQLPPLQRAQAHLTLAKATTTLFALNLRCKGVNPDDHPIKSELERLRLYEDKLERLMDSNKEPLRPSTILNHQAATRFIEHSLPDLTPEQKQSMREISRGEGPKIKHSERSGQKKRKYSSDKQSIQNAAQAFLEKAARELLGDNKDGFKGPLQVNSSDEDDKPDN* 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6665973 6668116 - Vvi4g585 Vvi4g585 785364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g585 182 MobiDBLite consensus disorder prediction 98 147 - -
Vvi4g585 182 MobiDBLite consensus disorder prediction 160 182 - -
Vvi4g585 182 Pfam Sas10/Utp3/C1D family 4 69 IPR007146 -
Vvi4g585 182 MobiDBLite consensus disorder prediction 109 138 - -
Vvi4g585 182 Coils Coil 56 76 - -
Vvi4g585 182 PANTHER NUCLEAR NUCLEIC ACID-BINDING PROTEIN C1D 2 179 - -
Vvi4g585 182 PANTHER SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR 2 179 IPR011082 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g585 K12592 C1D, LRP1; exosome complex protein LRP1 - vvi:100243947 349.747
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g585 . Blo12g01048 . Bda03g00103 . . . . . . Cma01g01673 . Car09g00354 . . . Cpe06g00290 . . . . . . . Cla05g01672 Cam05g1787 Cec05g1793 Cco05g1852 Clacu05g1775 Cmu05g1660 Cre05g1789 . . Cone17ag0977 . Lsi04g01343 . . . . . . . . Bpe04g00087 . . Sed05g1752 Cmo01g01721 Cmo09g00407 Cma09g00403 . Car01g01288 . . Cpe02g00318 Bhi09g03017 Tan01g3551 Cmetu07g0231 . Hepe01g1957 Mch11g0495 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005905 2 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 5 2 1 39