Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g586 ATGGATGTGATAATACTCTCCTCTTCAAGTAGTTGTTGTAGTAAGTTCAAGTATGGTTGTGCTGTAACTGGGACTAAACCCTCCGTTTTGAGCTGTAATGAGTCGTTAGGGGGAATCAAAATTGGGAATTTGAAGGTTTTGCCATCTGGGTGTAGGGTGAATTGGAAGAAACACAGGAAAAAACAAGTGGGTGTTTGTGGGTTTGTGATTAGAAGCTCATTTGATGTGGTGGTCGTGAAAAGGAAGCCGGAAAGTACTATGTCTTCTGAGGAAGTTTATAGGGTTTTAAAGTCGATTTCAGACCCGAACCAGGCCTTTTCTTTCTTTAATTCTGTGGCGGAAATGCCCAGAGTCATTCACACCACAGAGACATGCAATTACGTGCTTGAAATGTTGAGGGCTCATAGGAGGGTGGAGGATATGGTGGTTGTGTTTAATTTGATGCAAAAGCAAATCATAAAGAGGAGTATAAACACTTACTTGACTATTTTTAAGGTTCTTTATATAAGGGGAGGGCTTCGGGAAGCCCCAGTTGCGCTTGAAAAGATGAGAAAAGTGGGGTTTGTTTTGAACGGGTATTCGTATATTGGGTTGATCCATTTGCTTCTTAAATCTGGTTTTTGTAGGGAGGCTTTGAAGGTGTATAGAAGAATGGTGTCTGAAGGGATTAAGCCTAGTCTCAAGACTTACTCTGCACTTATGGTAGCACTGGGAAAGAGAAGGGATATTGAAACCGTCATGGGTTTGTTACAAGAGATGGAAAGCTTGGGATTGAGGCCTAATATTTACACATTTACCATATGCATTAGAATATTGGGGAGGGCAGGAAAAATTGATGAGGCTTATGGGATTTTGAAAAGGATGGATGATGCAGGATGTGGTCCTGATGTTGTTACTTATACAGTTCTCATTGATGCTCTTTGTAATGCTGGGAAGCTTAATAATGCAAAGGAATTATTTCTAAAGATGAAAGCAAGCAGCCATAAACCTGATCGAGTAACTTACATAACTTTATTGGACAAGTTTAGTGACCATGGAGACTTGGATGCCATAAAAGAATTTTGGAGTGAAATGGAAGCTGATGGTTATCTTCCTGATGTGGTTACCTTCACCATACTTATCGATGCTTTATGCAAAGTGGGGAAAGTTGATGAAGCATTTGGTACATTGGATGTCATGAAAAAGCAAGGGGTGGCACCAAATCTTCATACGTACAATACTTTGATTTGTGGGCTTTTGAGACTAAATAGATTAGATGAAGCATTAGAACTTTTCAACAGTATGGAATCTCTTGGTCTTGAAACTACTGCTTACACTTACATCCTTTTCATTGACTACTATGGAAAGTCAGGAGAATCCGGCAAAGCTATCAAGACATTTGAGAAGATGAAAACTAATGGAATTGTTCCTAATATTGTTGCTTGTAATGCATCTTTATATAGTCTTGCAGAACAAGGGAGGCTTGAAGAGGCAAAAGAGTTCTTTAATGGACTTAAAAAATGTGGGCTTGCTCCAGATGCTATAACCTATAATATTCTGATGAGATGCTATGGTAAGGCTGGGAGAGTTGATGATGCCATTAAGTTGCTCTCAGAGATGGAGGAAAATGGGTGTGATCCTGAAGTTGTTATTATCAATTCTCTGATTGACACACTTTACAAGGCCGATCGGGTAGATGAGGCATGGAAAATGTTTCAAAGAATGAAGGAAATGAAGCTTGCCCCTACAGTTGTGACTTACAATACGTTACTAGCTGGTTTGGGAAAAGAGGGAAGAGTCCAAGAGGCCACTGCGCTATTCAAGGGTATGATTGCAGATGATTGTCCTCCAAATACAATATCTTTCAACACACTTCTAGACTGCCTTTGCAAGAATGGTGAGGTTGATTTGGCCTTGAAGATGCTATTTAGAATGACAGAAATGAATTGTTTTCCAGATGTTTTAACATACAACACTGTCATTTATGGCTTGATTAAAGAAAACAGAGTTAATTATGCATTCTGGTTATTCCATCAGATGAAGAAAGTGATTTATCCTGATTATGTAACTTTGTGCACCCTCCTTCCTGGTGTCATAAAAGATGGGCGAATTGAGGATGCTTTTAGGGTTGCCAAGGAATTTGTTCATCATGTTGGAGATCATGCAGATGGGTCTTTTTGGGAAGATTTAATGGGAGGGATTTTGATAGAAGCTGAAATAGGCCAGTCTATATTATTCGCTGAAAGTTTAGTATGTAATACGATTTGTGAGGATGACTCAGTATTGATACCATTAGTTAAGTTTTTGTGCAAACATGGGAAAGCTGTTGATGCCTACAATGTGTTCCTGAAACTTACCAAAAGTTTTTGTATTACACCATCGCTAGAAGCATATAATTCTCTAATTGATGGACTCCTCAAAGCCCGGCTCACTGAAATGGCTTGGGGTCTTTTTTATAAGATGAAGAATGCTGGCTGTACACCTGATGTTTTCACCTACAACCTGTTCCTTGATGCCCTTGGGAAGTCTGGAAAGATCAAAGAACTTTTTGATTTGTATGAAGAGATGCTCTTTAGGGGCTGCAAACCTAACACAATAACTCATAACATAGTCATCTTCGGTCTTGTGAAATCTAATAGCTTAGATAAGGCTATAGATTTATACTATGATCTTATGAGTGGAGATTTCTCCCCAACTCCTTGGACATATGGCCCTCTTATTGATGGCCTTTTGAAGTTAGGAAGACTGGAGGAAGCGAAGCAGTTCTTTGAGGAGATGCTGGATTATGGATGCATGCCTAACTGTCCGCTTTACAATATTCTTATGAATGGATTTGGGAAACAGGGTGATGTGGAAACTGCTTGTGAGTTGTTTAGAAGGATGGTTAAAGAGGGAATAAGACCAGATTTGAAATCCTACAGCATTATGGTGGATTGCCTTTGCATGGTGGGGAAAGTTGATGATGCTCTGCACTACTTTGAGGAACTAAAGCTTTCTGGCCTGGATCCTGATTTGGTTTGTTATAACCTTATGATCAATGGTCTTGGAAGATCACAGAGGGTGGAGGAAGCTCTTTCTCTTTTTGATGAGATGCGGAATAGAGGGATTACTCCTGATCTTTACACCTACAATGCCTTAATACTCAATCTTGGGATTGCTGGAATGGTAGAGGAAGCGGGAAAGATGTATGAGGAACTCCAACTTAAAGGCCTTGAACCTAATGTGTTTACTTATAATGCTCTCATTCGCGGGCATAGCATGTCAGGTAACCCTGACCGTGCATATGCAGTCTACAAGAAGATGATGGTTGGGGGCTGCAGACCCAATACAGGAACATTTGCGCAACTTCCTAATCAATCTTGA 3342 39.98 MDVIILSSSSSCCSKFKYGCAVTGTKPSVLSCNESLGGIKIGNLKVLPSGCRVNWKKHRKKQVGVCGFVIRSSFDVVVVKRKPESTMSSEEVYRVLKSISDPNQAFSFFNSVAEMPRVIHTTETCNYVLEMLRAHRRVEDMVVVFNLMQKQIIKRSINTYLTIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAFWLFHQMKKVIYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHVGDHADGSFWEDLMGGILIEAEIGQSILFAESLVCNTICEDDSVLIPLVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGTFAQLPNQS* 1114
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6678207 6682125 + Vvi4g586 Vvi4g586 785365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g586 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Vvi4g586 1113 Pfam PPR repeat 502 534 IPR002885 -
Vvi4g586 1113 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 1004 1093 - -
Vvi4g586 1113 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 61 933 - -
Vvi4g586 1113 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 931 1005 - -
Vvi4g586 1113 PANTHER PROTON GRADIENT REGULATION3-LIKE PROTEIN 61 933 - -
Vvi4g586 1113 PANTHER PROTON GRADIENT REGULATION3-LIKE PROTEIN 931 1005 - -
Vvi4g586 1113 PANTHER PROTON GRADIENT REGULATION3-LIKE PROTEIN 1004 1093 - -
Vvi4g586 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Vvi4g586 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1067 1101 IPR002885 -
Vvi4g586 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Vvi4g586 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Vvi4g586 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 927 961 IPR002885 -
Vvi4g586 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Vvi4g586 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Vvi4g586 1113 Gene3D Tetratricopeptide repeat domain 1061 1110 IPR011990 GO:0005515
Vvi4g586 1113 Gene3D Tetratricopeptide repeat domain 991 1060 IPR011990 GO:0005515
Vvi4g586 1113 Gene3D Tetratricopeptide repeat domain 746 851 IPR011990 GO:0005515
Vvi4g586 1113 Gene3D Tetratricopeptide repeat domain 852 920 IPR011990 GO:0005515
Vvi4g586 1113 Gene3D Tetratricopeptide repeat domain 921 990 IPR011990 GO:0005515
Vvi4g586 1113 Gene3D Tetratricopeptide repeat domain 351 431 IPR011990 GO:0005515
Vvi4g586 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Vvi4g586 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Vvi4g586 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Vvi4g586 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 822 856 IPR002885 -
Vvi4g586 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 646 676 IPR002885 -
Vvi4g586 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 997 1031 IPR002885 -
Vvi4g586 1113 SUPERFAMILY TPR-like 400 997 IPR011990 GO:0005515
Vvi4g586 1113 Pfam Pentatricopeptide repeat domain 180 240 IPR002885 -
Vvi4g586 1113 Pfam Pentatricopeptide repeat domain 424 477 IPR002885 -
Vvi4g586 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Vvi4g586 1113 SUPERFAMILY HCP-like 876 1094 - -
Vvi4g586 1113 TIGRFAM PPR: pentatricopeptide repeat domain 263 297 IPR002885 -
Vvi4g586 1113 TIGRFAM PPR: pentatricopeptide repeat domain 965 997 IPR002885 -
Vvi4g586 1113 TIGRFAM PPR: pentatricopeptide repeat domain 403 434 IPR002885 -
Vvi4g586 1113 TIGRFAM PPR: pentatricopeptide repeat domain 895 928 IPR002885 -
Vvi4g586 1113 TIGRFAM PPR: pentatricopeptide repeat domain 544 576 IPR002885 -
Vvi4g586 1113 TIGRFAM PPR: pentatricopeptide repeat domain 474 507 IPR002885 -
Vvi4g586 1113 TIGRFAM PPR: pentatricopeptide repeat domain 824 858 IPR002885 -
Vvi4g586 1113 TIGRFAM PPR: pentatricopeptide repeat domain 1034 1068 IPR002885 -
Vvi4g586 1113 TIGRFAM PPR: pentatricopeptide repeat domain 859 892 IPR002885 -
Vvi4g586 1113 TIGRFAM PPR: pentatricopeptide repeat domain 578 612 IPR002885 -
Vvi4g586 1113 TIGRFAM PPR: pentatricopeptide repeat domain 508 540 IPR002885 -
Vvi4g586 1113 TIGRFAM PPR: pentatricopeptide repeat domain 333 367 IPR002885 -
Vvi4g586 1113 TIGRFAM PPR: pentatricopeptide repeat domain 193 226 IPR002885 -
Vvi4g586 1113 TIGRFAM PPR: pentatricopeptide repeat domain 649 675 IPR002885 -
Vvi4g586 1113 TIGRFAM PPR: pentatricopeptide repeat domain 298 331 IPR002885 -
Vvi4g586 1113 TIGRFAM PPR: pentatricopeptide repeat domain 790 823 IPR002885 -
Vvi4g586 1113 TIGRFAM PPR: pentatricopeptide repeat domain 613 647 IPR002885 -
Vvi4g586 1113 TIGRFAM PPR: pentatricopeptide repeat domain 999 1032 IPR002885 -
Vvi4g586 1113 TIGRFAM PPR: pentatricopeptide repeat domain 229 262 IPR002885 -
Vvi4g586 1113 TIGRFAM PPR: pentatricopeptide repeat domain 368 401 IPR002885 -
Vvi4g586 1113 TIGRFAM PPR: pentatricopeptide repeat domain 1069 1103 IPR002885 -
Vvi4g586 1113 TIGRFAM PPR: pentatricopeptide repeat domain 931 962 IPR002885 -
Vvi4g586 1113 TIGRFAM PPR: pentatricopeptide repeat domain 438 472 IPR002885 -
Vvi4g586 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Vvi4g586 1113 Gene3D Tetratricopeptide repeat domain 626 736 IPR011990 GO:0005515
Vvi4g586 1113 Gene3D Tetratricopeptide repeat domain 236 350 IPR011990 GO:0005515
Vvi4g586 1113 Gene3D Tetratricopeptide repeat domain 536 625 IPR011990 GO:0005515
Vvi4g586 1113 Gene3D Tetratricopeptide repeat domain 75 235 IPR011990 GO:0005515
Vvi4g586 1113 Pfam PPR repeat family 821 870 IPR002885 -
Vvi4g586 1113 Pfam PPR repeat family 1066 1106 IPR002885 -
Vvi4g586 1113 Pfam PPR repeat family 365 412 IPR002885 -
Vvi4g586 1113 Pfam PPR repeat family 295 342 IPR002885 -
Vvi4g586 1113 Pfam PPR repeat family 931 974 IPR002885 -
Vvi4g586 1113 Pfam PPR repeat family 575 624 IPR002885 -
Vvi4g586 1113 Pfam PPR repeat family 996 1040 IPR002885 -
Vvi4g586 1113 Pfam PPR repeat family 645 691 IPR002885 -
Vvi4g586 1113 Pfam PPR repeat 546 572 IPR002885 -
Vvi4g586 1113 Pfam PPR repeat 895 924 IPR002885 -
Vvi4g586 1113 Pfam PPR repeat 263 293 IPR002885 -
Vvi4g586 1113 Pfam PPR repeat 790 819 IPR002885 -
Vvi4g586 1113 Gene3D Tetratricopeptide repeat domain 432 535 IPR011990 GO:0005515
Vvi4g586 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Vvi4g586 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1032 1066 IPR002885 -
Vvi4g586 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 857 891 IPR002885 -
Vvi4g586 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 962 996 IPR002885 -
Vvi4g586 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Vvi4g586 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 787 821 IPR002885 -
Vvi4g586 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 892 926 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g586 - - - vvi:100247529 2238.77
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g586 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011759 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30