Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g588 ATGGGTATATACCTGAGCACTCCAAAAACTGAGAAGTTATCTGAGGATGGTGAGAATGGCAGGGTTAGATATGGTTTATCATCCATGCAAGGATGGCGCGCAACCATGGAAGATGCTCATGCTGCATACCCTGATCTGGATGCTTCCACTTCGTTTTTTGGTGTTTATGATGGCCATGGAGGTAAGGTAGTTGCAAAGTTTTGTGCCAAGTATCTTCACCAACAGGTGCTCAAGAATGAAGCTTATACAGCTGGAGACTTGGGAACTTCTGTTCAGAAATCCTTTTTCAGAATGGATGAGATGATGCGGGGACAGAGAGGGTGGAGGGAATTAGCTGTTCTAGGAGATAAAATAAACAAATTCACTGGCATGATAGAAGGTTTGATTTGGTCTCCAAGGAGCAGCAGCGATGGTAATGACCATGTTGATGATTGGGCATTTGAGGAGGGCCCTCATTCTGATTTCGCTGGACCAACTTCTGGGAGTACAGCCTGTGTCGCAATTATTAGAAATAACCAACTTGTTGTTGCTAATGCTGGTGATTCTCGTTGTGTAATTTCTAGGAAGGGTCAGGCTTACAATCTATCTAGAGACCACAAACCTGATCTCGAGGTCGAGAAAGAGCGAATTTTAAAAGCTGGTGGTTTTATCCATGCAGGCCGAGTCAATGGAAGTTTAAATCTTGCAAGAGCCATAGGTGATATGGAATTCAAGCAGAACAAATTTTTGCCTCCTGAAAAGCAAATTGTAACCGCCAATCCAGATATAAACACTGTTGAACTTTGCGATGATGATGATTTTATCGTACTGGCATGTGATGGCATATGGGATTGCATGTCAAGCCAGCAACTAGTAGATTTTATACAGGAGCAACTGATCTTGGAAAGCAAGCTTTCTGCAGTATGTGAACGAGTACTTGATAGGTGTTTAGCTCCATCAACAGCTGGTGGTGAAGGGTGTGACAACATGACCATGATCTTGGTGCAATTCAAGAAGCCCATCACGGCCACTCCATCAGGGGAGCAATCTTCATCATGTAACCAAGCTGATACTGAACCGAAACCAACAGAGTAA 1074 43.58 MGIYLSTPKTEKLSEDGENGRVRYGLSSMQGWRATMEDAHAAYPDLDASTSFFGVYDGHGGKVVAKFCAKYLHQQVLKNEAYTAGDLGTSVQKSFFRMDEMMRGQRGWRELAVLGDKINKFTGMIEGLIWSPRSSSDGNDHVDDWAFEEGPHSDFAGPTSGSTACVAIIRNNQLVVANAGDSRCVISRKGQAYNLSRDHKPDLEVEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPPEKQIVTANPDINTVELCDDDDFIVLACDGIWDCMSSQQLVDFIQEQLILESKLSAVCERVLDRCLAPSTAGGEGCDNMTMILVQFKKPITATPSGEQSSSCNQADTEPKPTE* 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6710109 6726284 - Vvi4g588 Vvi4g588 785367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g588 357 MobiDBLite consensus disorder prediction 335 357 - -
Vvi4g588 357 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 342 - -
Vvi4g588 357 SMART PP2C_4 13 328 IPR001932 -
Vvi4g588 357 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Vvi4g588 357 PANTHER PROTEIN PHOSPHATASE 2C 1 342 IPR015655 GO:0004722|GO:0006470
Vvi4g588 357 CDD PP2Cc 22 330 IPR001932 -
Vvi4g588 357 SMART PP2C_SIG_2 28 330 IPR001932 -
Vvi4g588 357 Pfam Protein phosphatase 2C 23 103 IPR001932 -
Vvi4g588 357 Pfam Protein phosphatase 2C 154 314 IPR001932 -
Vvi4g588 357 SUPERFAMILY PP2C-like 3 331 IPR036457 -
Vvi4g588 357 ProSiteProfiles PPM-type phosphatase domain profile. 23 330 IPR001932 -
Vvi4g588 357 Gene3D - 1 331 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g588 Vvi9g907 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g588 K17499 - vvi:100261065 731.095