Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g590 ATGAGAAAAAAAAAAAAGGGAAAATTAAGGGAACAAAAGGGTTTTTCTCATCTTGAGGGCGCCTCTCTTTCGTTCTCTCTTCGCAGCTGCGCAGAGAGAGGTGAGGTATACACAGGTTGGGAGAGAAAGTCCAGAGAGGCTGACTCTCCTTTCTCTCTATATTCGAACCCTATTCCTACTCTATCTCTCTCTATCTCTCTCTGTGTTCTCTCTCTGTGCCCACTTTCCGTTATCTTTTTCTCTCTACAACTCAACTCAGGATTCGCATCTCGAGTTATGCAGCAGGCAGATCAGACCGTCATAAGCTTGCGTCCAGGTGGTGGTGGTGGTCCTCGCGGCACCAGATTCCTCGCCTCTCGCTTCGACTCTTCCTCATCGTCTTCATCTGATGCTCAGCCTCTTCGCCCTCACGGCGGTCTCGCTCCATCGTCGTTCCTCAAGAGTGGAGACTTGCGGTTTGAAGGTCGTGAACGTGTCCGGTACACCCGAGACCAGCTGTTGCAACTTAGGGAGGTTGTTGATATCCCTGAGAATATTTTGAAGATTAAACAAGAGATTGAGTCTGAGTTTGGTGGTGAAGACCAAAACTGGAATCGTGGAGATGGCAACGTTCAACCCCAATCCCAAAGTCGTTATGCTGAGCCAGACAACCGTGACTGGCGTGGCCGATCTTCACAGTTGCCTGCCACTGGAGAGGATAGATCCTGGGAATCAATTCGAGACAATAAGGAGTTACCCAGTCGATTTGAGTCAAGGACTCAGGACTTGAATAACCGTCAAGACCAACTAAACTCCCAGTTTGTGAGGGCTCAACTATCTTCTAACCAAGGGGTAGGGCCTGCTCCTGTTCTTGTCAAGGCTGAAGTGCCATGGTCTGCTCGAAGGGTGAGTCTATCTGAGCAGGAACGTGTTCTGAAGACAGTGAAGGGCATACTGAACAAATTGACCCCGGAGAAGTTTGATGTTCTCAAAGGTCAGCTGATTGAATCTGGAATAACCACCCATGATATTTTAAAGGGTGTTATCTCGCTTATTTTTGATAAGGCTGTGCTGGAGCCCACATTTTGTCCCATGTATGCTCTTCTATGCTCAGACCTTAATGAGAAGCTGCCGCCATTTCCCTCTGAAGAACCTGGTGGGAAAGAAATTACCTTTAAGCGAATCCTCCTGAATAATTGCCAAGAGGCATTTGAAGGTGCTGACAGCCTGAGGGCAGAAATTGGGCTGTTGACTGCCCCTGAGCAAGAAGTGGAACGGAGGGAAAAAGAAAGAAAAGTGAAGCTCCGAACTCTTGGAAACATTCGCCTTATTGGTGAACTTCTTAAGCAGAAGATGGTGCCTGAAAAGATTGTTCACCACATTCTTCAGGAGCTTTTGGGACATGATGGTAAAACTTGCCCAGCTGAGGAGAATGTGGAGGCTATATGTCAATTTTTTAATACTATTGGAAAGCAGCTGGACGAGAGCCAAAAATCTCGGCGAGTTAATGATCTCTACTTCAGCAGGTTGAAGGAGCTGACGACAAACCCCCAACTTGCACCACGGTTGAGGTTCATGGTTCGTAATGTTCTTGATCTGCGGGCGAACAACTGGGTCCCTAGACGTGAAGAGGTGACAGCTAAAACCATCACTGAAATTCATTCAGAGGCAGAGAAGAATCTAGGGTTGCGTCCAGGTGCAACTGCGAGCATGAGAAATGGTCGTAATACAGGGGCACTTGGTGGTATGGGCCCTGGAGGCTTCCCCATTTCTAGACCTGGTTCTGGGGGTATGATGCCTGGAATGCCTGGGACCAGGAAGATGCCTGGAATGCCTGGGCTTGATACTGATAACTGGGAGGTTCCTCGAAACCGTTCAATGCCAAGGGCTGATGGGCCAATCAATTCAAAACTTCTACCCCAGGGCAGTGGGGGTTTCATAAGTGGGAAGACAAGTGCCTTATTGCAGGGTACACCTGTTCGTACTCCTGAGAAACCACAGGCTGCTGCACCAAGATCAAATCCTGTTGATCTTCGTAGAAAAACTGTCTCCCTTCTGGAGGAATATTTCAGTGTTCGAATTCTTGATGAAGCATTACAGTGTGTTGAGGAGCTGAAATCTCCTGCATATCACCCTGAGGTTGTTAAAGAAGCTGTTAGCCTTGCCCTGGAAAAGAGTCCACCTTGTGTAGAACCAGTCATAAAGCTTCTTGTGTACTTGTTCAATAAAAATGTTTTGCTGGCTAGGGATTTAGGGACTGGATGTCTCCTCTATGGCTCACTGTTGGATGATGTTGGCATTGATTTACCAAAAGCACCAAATAACTTCGGTGAGGTTCTTGGGAAGCTGGTTTTGGCCGGGGGTTTAGACTTCAAGGTGGTGAAGGAGGTCCTGGAGAAGGTGGAAGATGACAGGTTCCAGGCAGCCATCTTTGATGCTGTCATGAGCGGCATTAGCTCAGACCCTTTGGGGCAAGGATTGATGGAAAAACATAGACTTGATATCCAGGACTGCAAGAGTTTGCTTGGTTGA 2511 47.79 MRKKKKGKLREQKGFSHLEGASLSFSLRSCAERGEVYTGWERKSREADSPFSLYSNPIPTLSLSISLCVLSLCPLSVIFFSLQLNSGFASRVMQQADQTVISLRPGGGGGPRGTRFLASRFDSSSSSSSDAQPLRPHGGLAPSSFLKSGDLRFEGRERVRYTRDQLLQLREVVDIPENILKIKQEIESEFGGEDQNWNRGDGNVQPQSQSRYAEPDNRDWRGRSSQLPATGEDRSWESIRDNKELPSRFESRTQDLNNRQDQLNSQFVRAQLSSNQGVGPAPVLVKAEVPWSARRVSLSEQERVLKTVKGILNKLTPEKFDVLKGQLIESGITTHDILKGVISLIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSEEPGGKEITFKRILLNNCQEAFEGADSLRAEIGLLTAPEQEVERREKERKVKLRTLGNIRLIGELLKQKMVPEKIVHHILQELLGHDGKTCPAEENVEAICQFFNTIGKQLDESQKSRRVNDLYFSRLKELTTNPQLAPRLRFMVRNVLDLRANNWVPRREEVTAKTITEIHSEAEKNLGLRPGATASMRNGRNTGALGGMGPGGFPISRPGSGGMMPGMPGTRKMPGMPGLDTDNWEVPRNRSMPRADGPINSKLLPQGSGGFISGKTSALLQGTPVRTPEKPQAAAPRSNPVDLRRKTVSLLEEYFSVRILDEALQCVEELKSPAYHPEVVKEAVSLALEKSPPCVEPVIKLLVYLFNKNVLLARDLGTGCLLYGSLLDDVGIDLPKAPNNFGEVLGKLVLAGGLDFKVVKEVLEKVEDDRFQAAIFDAVMSGISSDPLGQGLMEKHRLDIQDCKSLLG* 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6768476 6777086 - Vvi4g590 Vvi4g590 785369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g590 836 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 95 652 - -
Vvi4g590 836 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 651 835 - -
Vvi4g590 836 Pfam MIF4G domain 305 530 IPR003890 GO:0003723|GO:0005515
Vvi4g590 836 MobiDBLite consensus disorder prediction 118 133 - -
Vvi4g590 836 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 95 652 IPR045208 GO:0003743
Vvi4g590 836 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 651 835 IPR045208 GO:0003743
Vvi4g590 836 Pfam MA3 domain 671 783 IPR003891 -
Vvi4g590 836 SMART ma3_7 671 783 IPR003891 -
Vvi4g590 836 SMART if4_15 305 530 IPR003890 GO:0003723|GO:0005515
Vvi4g590 836 ProSiteProfiles MI domain profile. 670 792 IPR003891 -
Vvi4g590 836 MobiDBLite consensus disorder prediction 557 598 - -
Vvi4g590 836 SUPERFAMILY ARM repeat 298 533 IPR016024 -
Vvi4g590 836 Gene3D - 665 826 - -
Vvi4g590 836 SUPERFAMILY ARM repeat 666 824 IPR016024 -
Vvi4g590 836 MobiDBLite consensus disorder prediction 198 213 - -
Vvi4g590 836 MobiDBLite consensus disorder prediction 102 143 - -
Vvi4g590 836 Gene3D - 296 531 - -
Vvi4g590 836 MobiDBLite consensus disorder prediction 191 243 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g590 K03260 - vvi:100250837 1389.02