Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g594 ATGAGTTCCTTTTCCATCACACGAAAAAAGACGCCTTTCCAGAAGCACAGAGAGGAGGAAGAGGCAAAGAAAAAAAGAGCTGAGGATGAAACTGCTCGATTATATGCCGAATTCGTGGAGTCATTTCAAGGGGATAATGCGCCAGGGTCAAAGACTTTTGTTCGAGGGGGGACAATCAATCCTAATGAGAGAGTGAAGACAGAGTCTGAAGGTGAAAAGTCGAAAGATGGGGTATCTGTTCCAAAGAAGGGAAGTAGGTATGTTCCATCTTTCATACCACCTCCTTTGGCAGCCAAGGGAAAAGAACCTGATAAGAAGAAGGAGGAGGAGAAGCCGAAGGAGAGAGAGAAGGGGAAGTCACGCAACATAGATCATTTTATGGAGGAGCTGAAGCATGAGCAAGAGATGAGGGAGAGACGAAATCAAGAACGGGATCAATGGCGTGATGGACGCCATAATGATAGTTCTGCTCTGCCTAGCAGATTTGATGAGCTGCCTGATGACTTTGATCCGAGTGGAAAGCTTCCTGGATCATTTGATGATGGTGATCCACAAACTACTAATCTCTATGTTGGAAATCTCTCACCACAGGTGGATGAGAATTTCCTTTTGCGTACTTTTGGAAGATTTGGTCCTATCGCTAGTGTGAAAATAATGTGGCCTAGGACAGAAGAGGAACGGAGGCGACAAAGAAATTGTGGCTTTGTTGCTTTCATGAACAGAGCTGACGGTCAGGCTGCTAAGGACGAAATGCAAGGGGTAGTTGTTTATGAGTATGAGTTGAAGATTGGATGGGGTAAGTCTGTTTCTCTTCCATCACAAGCACTACCTGCTCCCCCACCAGGTCACATGGCCATCAGGAGTAAGGAGGGAGCCACAGTAATCTTGTCTGGTCCATCAGGTCCACCAGTCACTTCTGTTCCAAATCAAAATTCTGAGCTGGTTCTCACTCCAAATGTCCCTGATATAATGGTTTCTCCTCCTGAGGATGATCATCTCCATCATGTGATCGACACAATGGCTCTATACGTTCTGGATGGAGGATGTGCTTTTGAACAAGCCATAATGGAGAGAGGTCGAGGAAATCCTCTTTTTAACTTCTTGTTTGAGCTTGGATCGAAGGAACACACTTACTATGTTTGGAGGCTCTATTCATTTGCTCAGGGTGATACTCTTCAAAGGTGGAGAACTGAGCCTTTCATCATGATAACTGGCAGTGGAAGATGGATGCCACCCCCTCTTCCTACGGTCAGAAGCCCAGAGCATGAGAAGGAGTCTGGTACCACATTTGCAGCAGGAAGAAGCAGGCGTGTGGAGCTGGAACGGACATTGACTGATCCACAGAGGGATGAATTTGAGGATATGTTGCGTGCTTTGACATTAGAAAGGAGTCAGATAAAGGAAGCTATGGGTTTTGCTTTAGATAATGCTGATGCAGCTGGAGAGATAGTTGAGGTTCTCACAGAATCTTTAACACTTAAAGAAACACCTATACCAACTAAAGTTGCAAGGCTCATGCTTGTCTCTGATGTTCTTCACAATAGCAGTGCTCCAGTAAAGAATGCATCTGCATACCGTACCAAATTTGAAGCAACCTTACCTGACATAATGGAGAGCTTTAATGACTTGTATCGTAGTGTAACGGGAAGGATTACTGCTGAGGCCCTTAAGGAACGAGTTATGAAGGTTCTTCAAGTCTGGGCAGACTGGTTCCTATTTTCAGATGCATATGTCAATGGATTGCGGGCTACTTTTCTTCGATCTGGGAACTCTGGAGTGACACCTTTTCATTCTATATGTGGTGATGCACCAGAAATAGAAAAGAAAACTAGCTCGGAAGATACTGGTGAAGGAGGCAAGTCCAATCAAGATGCTGCGCTAGCAATGGGCAAAGGAGCAGCAATGAAGGAACTATTGAGCCTTCCAATTGCTGAATTGGAAAGACGTTGCAGGCATAATGGGTTATCTCTTGTTGGTGGTAGAGAAATAATGGTTGCAAGATTGCTTAGTCTAGAAGAGGCTGAAAAACAAAGGGGATATGATTTAGATGATGATTTGAAATATGCACAGAGCCATTCAAACTCAGGTAGATACCCAAATGAGATACAGTCACAAGGAAAAGGGTCTGTACCTTTGGCCCCGACAATTCCCATACCACAGCCTGAGCTCAAAGCCTTTACAAATAAAGGGAAAACTGATCCTGTTTTGCCTGCCTCTAAGTGGGCCCGAGAGGATGATGACAGTGATGATGAACAAAAGAGAAGTGCTAGGGGTCTGGGGTTAAGCTACTCTTCTTCTGGAAGCGAGAATGCAGGTGATGGTCCTAGCAAGGCTGATGAGATGGAATTTGCAACTGAATCAAGCATCCCCTCTCAACCAGACAGTGGAATGATGAATGAAGAGCATAGACAAAAGTTGAGGCGTCTAGAGGTTGCTTTAATAGAATACCGTGAGTCTCTTGAAGAACGGGGGATCAAAAGCTCTGAGGAAATCGAGAGAAAAGTTGCAATCCATCGGAAACGGCTACAGTCCGAATATGGATTATCAGATAGTAATGAAGATGTCTCATGGAATAAGCGGTCATCTGCAGAGAGAAGGGACAGACGAGATGATTCTCGCGAGACTACAAGAAAGCGCCACCGCAGCCGGAGTCAAAGTGAGGATGGGGACCGGGAGAGGCACCGTGATAGATCTCATGATCCAGAAAGCGAAAAGGGAAGGGATCGAGAACGTGATCGTGAGAAGAGTGGAAGCAGAGAGAGGGAAGATCATGACAGGGATAGAGGTAGAGAGAGAGAGAGGGATAGGAGAAGACGGGTGAAATGA 2826 45.4 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERVKTESEGEKSKDGVSVPKKGSRYVPSFIPPPLAAKGKEPDKKKEEEKPKEREKGKSRNIDHFMEELKHEQEMRERRNQERDQWRDGRHNDSSALPSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPNQNSELVLTPNVPDIMVSPPEDDHLHHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWMPPPLPTVRSPEHEKESGTTFAAGRSRRVELERTLTDPQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSVTGRITAEALKERVMKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVTPFHSICGDAPEIEKKTSSEDTGEGGKSNQDAALAMGKGAAMKELLSLPIAELERRCRHNGLSLVGGREIMVARLLSLEEAEKQRGYDLDDDLKYAQSHSNSGRYPNEIQSQGKGSVPLAPTIPIPQPELKAFTNKGKTDPVLPASKWAREDDDSDDEQKRSARGLGLSYSSSGSENAGDGPSKADEMEFATESSIPSQPDSGMMNEEHRQKLRRLEVALIEYRESLEERGIKSSEEIERKVAIHRKRLQSEYGLSDSNEDVSWNKRSSAERRDRRDDSRETTRKRHRSRSQSEDGDRERHRDRSHDPESEKGRDRERDREKSGSREREDHDRDRGRERERDRRRRVK* 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6814068 6844194 + Vvi4g594 Vvi4g594 785373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g594 941 SUPERFAMILY RNA-binding domain, RBD 180 276 IPR035979 GO:0003676
Vvi4g594 941 Pfam Surp module 335 386 IPR000061 GO:0003723|GO:0006396
Vvi4g594 941 Gene3D - 97 271 IPR012677 -
Vvi4g594 941 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 268 IPR000504 GO:0003723
Vvi4g594 941 SUPERFAMILY Surp module (SWAP domain) 310 391 IPR035967 GO:0003723|GO:0006396
Vvi4g594 941 Gene3D - 445 591 IPR008942 -
Vvi4g594 941 PANTHER - 726 937 - -
Vvi4g594 941 PANTHER - 5 693 - -
Vvi4g594 941 Gene3D - 798 849 - -
Vvi4g594 941 Gene3D Surp module 322 391 IPR035967 GO:0003723|GO:0006396
Vvi4g594 941 MobiDBLite consensus disorder prediction 687 803 - -
Vvi4g594 941 MobiDBLite consensus disorder prediction 839 941 - -
Vvi4g594 941 MobiDBLite consensus disorder prediction 738 756 - -
Vvi4g594 941 ProSiteProfiles CID domain profile. 444 589 IPR006569 -
Vvi4g594 941 Pfam CID domain 451 579 IPR006569 -
Vvi4g594 941 SUPERFAMILY ENTH/VHS domain 447 587 IPR008942 -
Vvi4g594 941 Coils Coil 799 819 - -
Vvi4g594 941 PANTHER RNA PROCESSING PROTEIN LD23810P 5 693 - -
Vvi4g594 941 PANTHER RNA PROCESSING PROTEIN LD23810P 726 937 - -
Vvi4g594 941 Coils Coil 449 469 - -
Vvi4g594 941 SMART cwf21_2 798 847 IPR013170 -
Vvi4g594 941 MobiDBLite consensus disorder prediction 99 170 - -
Vvi4g594 941 MobiDBLite consensus disorder prediction 857 934 - -
Vvi4g594 941 ProSiteProfiles SAP motif profile. 638 672 IPR003034 -
Vvi4g594 941 SMART rrm1_1 188 264 IPR000504 GO:0003723
Vvi4g594 941 MobiDBLite consensus disorder prediction 691 710 - -
Vvi4g594 941 MobiDBLite consensus disorder prediction 758 772 - -
Vvi4g594 941 SMART surpneu2 334 388 IPR000061 GO:0003723|GO:0006396
Vvi4g594 941 Coils Coil 17 37 - -
Vvi4g594 941 ProSiteProfiles SURP motif repeat profile. 336 379 IPR000061 GO:0003723|GO:0006396
Vvi4g594 941 MobiDBLite consensus disorder prediction 65 80 - -
Vvi4g594 941 SMART 558neu5 451 586 IPR006569 -
Vvi4g594 941 MobiDBLite consensus disorder prediction 1 188 - -
Vvi4g594 941 CDD RRM_SR140 186 269 IPR035009 -
Vvi4g594 941 MobiDBLite consensus disorder prediction 11 35 - -
Vvi4g594 941 Pfam cwf21 domain 801 845 IPR013170 -
Vvi4g594 941 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 261 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g594 K12842 SR140; U2-associated protein SR140 - vvi:100262865 1709.12
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g594 . . . Bda03g00108 . . Bma04g00100 . Cmo05g00348 Cmo12g00321 . Cma05g00344 . Car12g00350 Sed11g1135 Cpe07g00326 . Bhi04g00058 Tan02g2773 Cmetu03g2041 . . . Lcy13g1839 . . . . . . . . . . . . . . Cme03g01569 . . . . . Bpe04g00092 . . . . . . Cma12g00368 . Car05g00290 Cpe11g00290 . . . . . . . . Cla08g01372 Cam08g1841 Cec08g1419 Cco08g1552 Clacu08g1536 . Cre08g1319 Lsi08g01255 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005029 1 2 1 1 1 1 2 1 1 3 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 3 1 40