Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g596 ATGATAGTGGAGGAGGAGAATCCTCCAACACCCAGTGAGGTTGTGGAGGAAAATGAATCCAATGGAGGATTCTGTGATTTCATCTGTGCTCCAATCTATTGGTTCAAAATGCTTGCCATGGAACTGCATTGGAGTTTTGTATTTGGGGTTGTTGCAGTTTATGGGATAAGCCAAGGACTGGGTGGTGCTTTGGCTCGTGTCGGCACAGAGTATTATATGAAGGATGTTCAGAAGGTTCAACCTTCTGAAGCACAAATTTATGGAGGAATAACTTCTATTCCTTGGCTTGTCAAGCCTCTTTGGGGTCTTCTCACAGATGTGCTCCCAATCGTTGGGTATCACAGAAGGCCTTATTTCATTTTAGCCGGTCTTCTTGGTGTGATCTCTATGCTCGTGTTATCATTTCACAAAGACCTGCATCTTGTACTCGCATTGTTCTCTTTAACAGCAGGAAGTGCTGGGGTAGCAATAGCAGATGTCACCATTGATGCCTGCGTGGCTCAGAACAGTAATCTACACCCTTCTCTTGCAGCTGACATGCAAAGCCTGTGTGCACTAAGTTCATCAGTTGGTGCACTAGTGGGATTCTCTATTAGTGGTATTTTTGTCCACCTCATAGGCCCTACGGGGGTGTTTGGCTTGCTGACTATCCCGGCTACACTTGTACTTCTAGTTGGAATTGTTCTTAGTGAACCCCACACGCCTAACTTTGTTTACAGACAGGTAAACCAAAAGTTGCTTGACGCTTGCAAGGCAATGTGGACAACATTGAAATACCCAGATGTGTGGAGACCATGTTTGTATATGTACTTATCCCTCGCATTGAGCTTGAATATCCATGAAGGCTTGTTCTATTGGTATACAGACTCTAAGGAAGGTCCATTATTCTCTCAGGAGACTGTTGGCTACATATTCTCAATTGGCTCAGTTGGCTCCCTTTTAGGTGCCATACTCTACCAATATACTCTAAAGGACCACCCCTTCCGGGACTTGCTCTTCTGGACTCAGTTGCTTTATGGTTTATCAGGAATGCTGGATTTGATACTGGTGCTGCGTCTCAACTTGAAGTATGGCATACCAGATTATTTCTTCATTGTCGTTGCTGAAGGTGTATCTCAAATGATAGGACGGCTCAAATGGATGCCACTTCTTGTCCTCAGCTCCAAGCTTTGTCCCCCTGGCATTGAAGGCACATTCTTCGCCTTGCTTATGTCAATTGACAACCTTGGAATACTCTCATCCTCATGGGGAGGTGGCTTTCTACTCCATATCTTGAAGGTGACTCGGGTACAATTTGATAATCTGTGGATGGCGATTTTGATCCGAAACATACTGAGACTTAGCCCACTTGCTCTGCTGTTCTTGGTACCCCGTACTGATCCCAACTCTTCCATTATTCCCTCCCAAATCCTCCAGAATACCAAGCAGGCTGCCCATGCTTCACACCCTGAGAATGAGAATAAAAATGAGGATGGCAATATTGAATTGCTTCCTCTTGTTAACAATGTTGATAGTAGATGA 1521 44.64 MIVEEENPPTPSEVVEENESNGGFCDFICAPIYWFKMLAMELHWSFVFGVVAVYGISQGLGGALARVGTEYYMKDVQKVQPSEAQIYGGITSIPWLVKPLWGLLTDVLPIVGYHRRPYFILAGLLGVISMLVLSFHKDLHLVLALFSLTAGSAGVAIADVTIDACVAQNSNLHPSLAADMQSLCALSSSVGALVGFSISGIFVHLIGPTGVFGLLTIPATLVLLVGIVLSEPHTPNFVYRQVNQKLLDACKAMWTTLKYPDVWRPCLYMYLSLALSLNIHEGLFYWYTDSKEGPLFSQETVGYIFSIGSVGSLLGAILYQYTLKDHPFRDLLFWTQLLYGLSGMLDLILVLRLNLKYGIPDYFFIVVAEGVSQMIGRLKWMPLLVLSSKLCPPGIEGTFFALLMSIDNLGILSSSWGGGFLLHILKVTRVQFDNLWMAILIRNILRLSPLALLFLVPRTDPNSSIIPSQILQNTKQAAHASHPENENKNEDGNIELLPLVNNVDSR* 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6870733 6884939 - Vvi4g596 Vvi4g596 785375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g596 506 CDD MFS_FBT 49 454 - -
Vvi4g596 506 SUPERFAMILY MFS general substrate transporter 47 459 IPR036259 -
Vvi4g596 506 Gene3D MFS general substrate transporter like domains 43 442 IPR036259 -
Vvi4g596 506 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC 10 505 IPR039309 -
Vvi4g596 506 PANTHER FOLATE-BIOPTERIN TRANSPORTER 2-RELATED 10 505 - -
Vvi4g596 506 Pfam BT1 family 58 225 IPR039309 -
Vvi4g596 506 Pfam BT1 family 266 460 IPR039309 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g596 - - - vvi:100261254 1018.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g596 Vvi9g943 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g596 . . . . Bpe02g01267 . . . Cmo05g00347 Cmo12g00322 . Cma05g00343 . Car12g00352 Sed03g1651 Cpe07g00327 . Bhi04g00059 Tan02g2774 Cmetu03g2123 . Hepe10g0210 . Lcy13g1840 . . . . . . . . . . . . . . Cme03g01568 . . Bda01g01018 . . . Bma01g01261 . . . . . Cma12g00369 . Car05g00289 Cpe11g00289 . . . . . . . . Cla08g01373 Cam08g1842 Cec08g1420 Cco08g1553 Clacu08g1537 . Cre08g1320 Lsi08g01256 . Chy03g01078 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004718 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 2 1 1 2 41