Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g597 ATGTCCAAACAAAACCCCTCATACACAAACCCTAAACCCTGCAAACACCTTGCAGATTACAAGCTCAGACATGGCTTGAATGGCTTCAAAACCCTCCAAAACTGCCTTAAAACGACCCCATATGGAAGAACAAGTGTGAGCAAACACAAATCAGAGACACCCAGATGCAGTTTGTGTTTTGGGTATCAAGGTAGACTCTATTTCTGCTTGATTTGTTCTTCAATCACATGTTCTAGTCATGCAAATGAGCATTCCCAATCGCACCACGGCCATGAGATTGCTGTGGACGTTGAAAGGGCCGAGCTTTACTGCTGTGTGTGCCGTGATCAGGTGTATGATCCTGATTTTGATAGGGCTGTGGTGAGCAAACACTTCATGGATATGCCCAGCAATGTAAATGGGGTGGAGGGTGTTGTGGAGGAGTCGAATAAGAGGAGGAGATTGGGTTTAGGGTTAGAATTGGAGTGGAAGAGGTCGAAAAGGCTGATTTCGATGGCTGATCGGAGGGCGAAATCAATATTTCCATTGGGTTTGAGGGGATTGAACAATCTGGGAAATACTTGCTTCATGAATTCTGTGTTGCAAGCATTGTTTCATGCTCCACCTCTTAGGAATTACTTCCTAAGTGACCGCCACAACCGCCAATCTTGCCGGAGAAGGTCCTCAGATCGCCTTTGTTTGCCTTGTGACATTGACGTTATCTTCTCAGCCGTGTTTTCCGGTGATCGGACTCCTTACAGTCCTGCTCGGTTTCTTTACAGTTGGTGGCAGCATTCAGAAAATCTAGCTAGTTATGAACAGCAAGATGCTCATGAGTTCTTCATTTCAATGCTTGATCAAATCCATGTGAAAGAAGGAAAATCAGGAAACCAAGATAAAGATAACAGAGATTGCCAGTGTATTGCTCATAAAGCGTTCTCTGGGCTGTTGAGATCAGATGTCACTTGTACAACCTGCGGATTTACTTCGACAACCTATGACCCATGTGTGGACATTTCTCTTAACTTGGACATGAGCTTTTGCCCTTCAACAGGCATGACCAACAGGACCACCAAGCCAAATGAGAATGCAATTATATCTACTCTCTTGGGCTGCTTGGACCTCTTCACAAGACCAGAGAAGTTGGGTCCAGACCAGAAATTGTACTGCCAAAACTGTCAAGAAAGGCGAAACTCATTGAAGCAAATGTCCATCAGAAGGCTCCCAATAGTACTATGTCTACATATAAAGCGATTTGAGCACTCAACAATCAGAAAAATGTCACGGAAAATTGACCAATATCTGCAGTTCCCCTTCTCCTTGGACATGACTCCATACTTATCCTCCTCCATTGTTTTTGCTGTGGTTACTCATTCAGGGATGCTAGAATCTGGGCATTATGTGACTTACGTCCGTGTAAGAAATCGATGGTACAAATGTGACGATGCCTGGATTACTGAAGTTGATGAAGGGGTGGTGAGGGCTTCACAATGCTACTTGATGTATTATGTGCAGAAAGGGTTTTACTATAAAGCTAGTGAAGATTTAAGTTGCCTGCCCATGTCCCCTCCTGGGGGAGAATCCTATCTTCCAATTGCCGGTTGTTGCTAA 1590 44.34 MSKQNPSYTNPKPCKHLADYKLRHGLNGFKTLQNCLKTTPYGRTSVSKHKSETPRCSLCFGYQGRLYFCLICSSITCSSHANEHSQSHHGHEIAVDVERAELYCCVCRDQVYDPDFDRAVVSKHFMDMPSNVNGVEGVVEESNKRRRLGLGLELEWKRSKRLISMADRRAKSIFPLGLRGLNNLGNTCFMNSVLQALFHAPPLRNYFLSDRHNRQSCRRRSSDRLCLPCDIDVIFSAVFSGDRTPYSPARFLYSWWQHSENLASYEQQDAHEFFISMLDQIHVKEGKSGNQDKDNRDCQCIAHKAFSGLLRSDVTCTTCGFTSTTYDPCVDISLNLDMSFCPSTGMTNRTTKPNENAIISTLLGCLDLFTRPEKLGPDQKLYCQNCQERRNSLKQMSIRRLPIVLCLHIKRFEHSTIRKMSRKIDQYLQFPFSLDMTPYLSSSIVFAVVTHSGMLESGHYVTYVRVRNRWYKCDDAWITEVDEGVVRASQCYLMYYVQKGFYYKASEDLSCLPMSPPGGESYLPIAGCC* 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6893302 6896204 - Vvi4g597 Vvi4g597 785376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g597 529 SUPERFAMILY RING/U-box 12 118 - -
Vvi4g597 529 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 180 195 IPR018200 GO:0004843|GO:0006511
Vvi4g597 529 Pfam Ubiquitin carboxyl-terminal hydrolase 179 496 IPR001394 GO:0004843|GO:0016579
Vvi4g597 529 Pfam Zn-finger in ubiquitin-hydrolases and other protein 56 115 IPR001607 GO:0008270
Vvi4g597 529 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 179 499 IPR028889 -
Vvi4g597 529 SMART Zf_UBP_1 55 102 IPR001607 GO:0008270
Vvi4g597 529 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 131 IPR013083 -
Vvi4g597 529 CDD Peptidase_C19D 179 497 - -
Vvi4g597 529 Gene3D Cysteine proteinases 175 502 - -
Vvi4g597 529 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 6 517 - -
Vvi4g597 529 ProSiteProfiles Zinc finger UBP-type profile. 12 129 IPR001607 GO:0008270
Vvi4g597 529 PANTHER UBIQUITIN C-TERMINAL HYDROLASE 22 6 517 - -
Vvi4g597 529 SUPERFAMILY Cysteine proteinases 175 498 IPR038765 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g597 K11366 USP22_27_51, UBP8; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] - vvi:100255882 1051.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g597 Vvi11g552 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g597 Blo01g01420 . Bda01g00659 . . Bpe02g00532 . . . . . . Car09g00347 . . . . . . . . . . . Cla05g01666 Cam05g1780 Cec05g1786 Cco05g1846 Clacu05g1769 Cmu05g1653 Cre05g1782 . Cone7ag1656 . . Lsi04g01349 Csa03g04488 Chy04g00212 . . . . . . . . . Sed13g1952 . Cmo09g00400 . . . . . . Bhi09g03035 Tan01g3536 Cmetu07g1151 . Hepe01g1951 Mch11g0488 . . . . . . . . . . . Cme07g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012836 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 0 1 1 1 0 1 1 1 1 28