Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g609 ATGTTGATGCTCCAGAATCGGCCACCTCGGGGCGACTCCGATGATGCGCGGGAGTGGGGCGAGTTTCGCCATTTACCTGGAAAGCGGTTCTACGACTTCTCAAAGATTCGTCAGGAGATTCAGGATGAGACTGAAAGAGGAGCCGGATTTAACAAAGGGGTGTCGGAGAAGCAAATTCGCTTAATGATCTCCTCCCCAAATGTCCTTAATATGACCCTTATCGATTTACCTGGGATTACTAAGGTTCCTGTGGGTGACCAACCTACCGATATAGAAGCAAGGGTTAAGAAGATGATAATGTCCCATATCAAACAAGAAAACTGTATCATATTGGCAGTTACTCCTGCAAATTCTGATTTGGCAAACTCTGATGCTCTTCAAATGGCTAGAGATGCTGATCCAGCTGGTACTCGGACAATTGGTGTAATCACCAAGCTAGATATAATGGACAGGGGGACTAATGCGTGTAATTTTCTGCTTGGAAACATTGTTCCACTTAGCCTTGGTTACGTCGGTGTTGTGAATCGCAGTCAAGAGGACCTAAATCAAAACCGTAGCATTTCAGAAGCACTTGCTTATGAGGACCAGTTCTTCCATGATCATCCTGTGTATCATGGTCTGTCTGATTGTTGCGGCGTTCCCCAGTTAGCAAAGAAGTTAAATCAGATTCTGGAGCACCACATTAGAATGGTCCTACCAAGTTTGAAGGATGAACTAAATTGCCATATGATTGCTGTGGTAAAAGAGCTGCAGACATCTGGAGAAGTAGTGGAATCAAAAGTGGAACAAGGGGCAGTTCTGTTGAGCATCTTGAAAAAATACTGTGAAGCTTTCTCTGCCCTTGTTGATGGGAAAAGTCAGGAGATGTCAACTAGAGAGTTGTCTGGTGGAGCCAGAATCCACTACATTTTTCAGTCAATTTTTGTGAAGAGCTTGGAGGAGGTGGATCCTTGTGAAGCTCTAACAGACGAGGATATTCGAATGGCTATCCAAAATGCCAATGGTCCAAGAAATGCTTTATTTGTGCCAGAGGTCCCATTTCAAATTCTGGTTAGAAGACAAATACATCGTTTGTTAGACCCTAGCCTTCAGTGCCTACGATATGTCCATGCTGAACTTCTAAAGATGAGTCATGCTTGTGAGGCTCCTGAGGTGCAAAGATTCCCAGTATTGAGAAGGAAGCTGGAAGATGTCATGGGAAAGTTTTTGCGTGATGGCATAAAACCTGCTGAGAGAATGATAGGAAACATGATTGAGATGGAGAAGGGTTATATAAATTCTTCACATCCAAATTTCATAGGTGGAAGCAAAGCAGTAGAGCTTGCAGTCCAGCAGTTACGATCTTCTCAGGTATATAGCACAATTTATGATGGTACAGATGTTGAAAGTGTATCCACATTAGAGCAGGGCCTGAGATCTCGAGCAGTTCTTGCTAATTCAGTTGGAAGTCATCCTCAGTCCATGAATGAAAGATCAGTGTCAGCTGGTAAACTCTTAGACATGGAGTTTATTATGTCACAAACTGTTGCTTGCAATTTTACAGGTAATGCATACTCGAGAACTTGGGGAATTTCATCAATAATTGGGAAGTGGGCATCACCTAATGATCGTTCAGCTAACACAGCTCTTGGTGAAACATTTCATGATATGGAGCTGTTGCCCTCTATGATACAATTGAGAGACCCTCCACCCATCTTAAAGCCACTAGAAACACAAACAGAGCGTGAAGCAGTGGAAGTAATAGTAACCAAATTACTCCTGAGGTCTTATTATGACATTGTTAGAAAGAACGTTCAAGACTTCGTTCCTAAAGCTATAATGCATTTTCTGGTCAATCATACAAAAAGGGACCTGCTTAATGCCTTTGTACAAAAACTATACAGAGAGAACCTCTTCAAAGAGATGTTGCGGGAGCAGGATGATGTTATCCTAAAAAGAAAGCGGAGCCAAGAAATGTTCTGCGTTCTGCAGCAAGCTATTCAGGCAATTGATGAGGTTGATTCTGAAATGTCATCCCCAAATTCAAATTCAAGCTTCAGTGCTGATACAACCATGCGATTGCCAAGAACCCCGAGTCATCATTCCCATGTCTAG 2094 42.74 MLMLQNRPPRGDSDDAREWGEFRHLPGKRFYDFSKIRQEIQDETERGAGFNKGVSEKQIRLMISSPNVLNMTLIDLPGITKVPVGDQPTDIEARVKKMIMSHIKQENCIILAVTPANSDLANSDALQMARDADPAGTRTIGVITKLDIMDRGTNACNFLLGNIVPLSLGYVGVVNRSQEDLNQNRSISEALAYEDQFFHDHPVYHGLSDCCGVPQLAKKLNQILEHHIRMVLPSLKDELNCHMIAVVKELQTSGEVVESKVEQGAVLLSILKKYCEAFSALVDGKSQEMSTRELSGGARIHYIFQSIFVKSLEEVDPCEALTDEDIRMAIQNANGPRNALFVPEVPFQILVRRQIHRLLDPSLQCLRYVHAELLKMSHACEAPEVQRFPVLRRKLEDVMGKFLRDGIKPAERMIGNMIEMEKGYINSSHPNFIGGSKAVELAVQQLRSSQVYSTIYDGTDVESVSTLEQGLRSRAVLANSVGSHPQSMNERSVSAGKLLDMEFIMSQTVACNFTGNAYSRTWGISSIIGKWASPNDRSANTALGETFHDMELLPSMIQLRDPPPILKPLETQTEREAVEVIVTKLLLRSYYDIVRKNVQDFVPKAIMHFLVNHTKRDLLNAFVQKLYRENLFKEMLREQDDVILKRKRSQEMFCVLQQAIQAIDEVDSEMSSPNSNSSFSADTTMRLPRTPSHHSHV* 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7027360 7101962 + Vvi4g609 Vvi4g609 785388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g609 697 Pfam Dynamin central region 154 439 IPR000375 -
Vvi4g609 697 CDD DLP_1 4 233 IPR001401 GO:0003924|GO:0005525
Vvi4g609 697 Pfam Dynamin family 15 145 IPR045063 -
Vvi4g609 697 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 1 233 IPR030381 GO:0005525
Vvi4g609 697 PANTHER DYNAMIN 2 681 IPR022812 -
Vvi4g609 697 Pfam Dynamin GTPase effector domain 576 666 IPR003130 GO:0003924|GO:0005525
Vvi4g609 697 PANTHER DYNAMIN-RELATED PROTEIN 3A-LIKE ISOFORM X1 2 681 - -
Vvi4g609 697 SMART GED_2 575 666 IPR003130 GO:0003924|GO:0005525
Vvi4g609 697 MobiDBLite consensus disorder prediction 666 690 - -
Vvi4g609 697 Gene3D - 2 241 IPR027417 -
Vvi4g609 697 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 240 IPR027417 -
Vvi4g609 697 Gene3D Dynamin, middle domain 263 492 - -
Vvi4g609 697 Gene3D Dynamin, middle domain 495 646 - -
Vvi4g609 697 ProSiteProfiles GED domain profile. 580 671 IPR020850 -
Vvi4g609 697 MobiDBLite consensus disorder prediction 666 697 - -
Vvi4g609 697 SMART dynamin_3 3 184 IPR001401 GO:0003924|GO:0005525
Vvi4g609 697 PRINTS Dynamin signature 65 82 IPR022812 -
Vvi4g609 697 PRINTS Dynamin signature 115 133 IPR022812 -
Vvi4g609 697 PRINTS Dynamin signature 134 150 IPR022812 -
Vvi4g609 697 PRINTS Dynamin signature 157 176 IPR022812 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g609 K17065 DNM1L; dynamin 1-like protein [EC:3.6.5.5] - csin:114295550 946.036
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g609 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001151 1 6 1 4 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 3 3 2 2 8 3 1 78