Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g612 ATGAGGCCATTGCACTCACTCAGTCAATCTTCTTTCACCGCTTTATACAGGGCTTCAGTCAACCATTGTTTGGCGATCAAATCAGGAACAACTGCAAGCATATACACTGCCAACAATATCATAAGTGGATACGCAAAATGTGGAGAGATACGTATTGCTAGCAAGATGTTCGGTGAAACGTCGCAACGGGATGCTGTGTCTTGGAATACAATGATTGCAGGGTTTGTGAATTTGGGGAACTTTGAGACTGCACTGGAGTTTCTAAAATCCATGAAAAGATATGGGTTTGCGGTTGATGGGTATAGTTTTGGAAGTATACTTAAGGGTGTTGCTTGTGTTGGATATGTTGAGGTTGGGCAGCAAGTGCATTCCATGATGGTTAAGATGGGTTACGAGGGGAATGTGTTTGCAGGTAGCGCACTCTTAGACATGTATGCGAAATGTGAGAGAGTTGAGGATGCATTTGAGGTGTTTAAGTCTATAAATATTCGTAATTCTGTTACCTGGAATGCTTTGATTAGTGGGTATGCTCAAGTGGGTGATCGGGGGACTGCATTTTGGCTATTGGATTGTATGGAGCTGGAGGGTGTGGAGATTGACGATGGGACATTTGCTCCACTTTTGACATTGCTTGATGACCCAGATTTGCACAAATTGACAACGCAGGTTCATGCTAAAATTGTGAAGCATGGGTTGGCATCTGATACTACTGTGTGCAATGCCATAATCACAGCGTACTCAGAGTGTGGGTCCATTGAAGATGCTGAAAGAGTGTTTGATGGTGCTATTGAGACACGAGATCTAGACCATGTCTCTTGGAATTCCATTTTGACAGGATTCTCACAAAGTGGGTTAAGTGAAGATGCATTGAAGTTCTTTGAGAATATGCGATCTCAGTACGTAGTGATCGATCACTATGCCTTTTCTGCTGTCCTTAGGTCTTGCTCGGATTTAGCAACTCTCCAGTTGGGTCAACAAGTTCATGTCCTAGTACTTAAATCAGGCTTCGAGCCAAATGGATTCGTTGCCAGTTCATTGATATTTATGTATTCGAAGTGTGGTGTCATTGAAGATGCTAGAAAATCATTTGATGCAACACCAAAAGATAGCTCAATCGCATGGAACTCACTCATATTTGGTTATGCGCAACACGGGCGAGGCAAAATTGCACTTGATCTCTTCTTCTTAATGAAAGATAGAAGAGTGAAGCTGGATCATATAACTTTTGTTGCAGTTCTAACTGCATGCAGCCACATTGGATTGGTAGAAGAGGGTTGGTCTTTCCTAAAATCTATGGAATCTGACTATGGGATTCCACCTCGGATGGAGCATTATGCTTGTATGATTGATCTGCTTGGGCGGGCTGGGCGTCTAGATGAGGCAAAAGCATTAATTGAGGCAATGCCATTTGAGCCAGATGCAATGGTGTGGAAAACACTACTTGGTGCATGTAGGACTTGTGGTGACATAGAATTGGCGAGTCAGGTGGCAAGCCATCTATTAGAACTAGAGCCTGAAGAGCATTGCACTTATGTTCTACTCTCCAGCATGTTTGGGCATCTCAGGAGGTGGAACGAAAAGGCTAGCATAAAGAGGTTGATGAAGGAGAGAGGGGTAAAAAAGGTTCCTGGCTGGAGTTGGATAGAGGTTAAAAATGAGGTGCGTTCCTTCAATGCTGAGGATCGATCCCACCCTAATTGTGAAGAGATATACCTGAGATTAGGAGAATTAATGGAGGAAATCAGGAGGTTGGATTATGTTGCTAATTCAGAGTTTTTACAGAACAACCTTCTATCTGATACACTGTCAGGAGCTATTCCAGGTATAGTACAGCTTGTAGGTCTCTCTTCATTCCAGAGTCCCCTATATGGCTGGCAAAGATTGGCCGAGAGAATGACTGTGAACCTTAGACGAGAAAAAGGCGATATTTCTCAGGAAGCAGCTGATATATTTTGGGCATTTTGA 1965 43.1 MRPLHSLSQSSFTALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVRSFNAEDRSHPNCEEIYLRLGELMEEIRRLDYVANSEFLQNNLLSDTLSGAIPGIVQLVGLSSFQSPLYGWQRLAERMTVNLRREKGDISQEAADIFWAF* 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7150218 7155555 + Vvi4g612 Vvi4g612 785391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g612 654 Gene3D Tetratricopeptide repeat domain 320 430 IPR011990 GO:0005515
Vvi4g612 654 Gene3D Tetratricopeptide repeat domain 4 114 IPR011990 GO:0005515
Vvi4g612 654 Gene3D Tetratricopeptide repeat domain 216 319 IPR011990 GO:0005515
Vvi4g612 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Vvi4g612 654 Pfam E motif 489 549 IPR046848 -
Vvi4g612 654 Pfam PPR repeat 167 197 IPR002885 -
Vvi4g612 654 Pfam PPR repeat 139 160 IPR002885 -
Vvi4g612 654 Pfam PPR repeat 238 260 IPR002885 -
Vvi4g612 654 Pfam PPR repeat 445 468 IPR002885 -
Vvi4g612 654 Pfam PPR repeat 36 59 IPR002885 -
Vvi4g612 654 Pfam PPR repeat family 64 111 IPR002885 -
Vvi4g612 654 Pfam PPR repeat family 371 417 IPR002885 -
Vvi4g612 654 Pfam PPR repeat family 269 315 IPR002885 -
Vvi4g612 654 Gene3D Tetratricopeptide repeat domain 115 215 IPR011990 GO:0005515
Vvi4g612 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 64 98 IPR002885 -
Vvi4g612 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Vvi4g612 654 PANTHER OS01G0913400 PROTEIN-RELATED 21 97 - -
Vvi4g612 654 PANTHER OS01G0913400 PROTEIN-RELATED 94 268 - -
Vvi4g612 654 PANTHER OS01G0913400 PROTEIN-RELATED 269 597 - -
Vvi4g612 654 TIGRFAM PPR: pentatricopeptide repeat domain 238 261 IPR002885 -
Vvi4g612 654 TIGRFAM PPR: pentatricopeptide repeat domain 373 405 IPR002885 -
Vvi4g612 654 TIGRFAM PPR: pentatricopeptide repeat domain 445 468 IPR002885 -
Vvi4g612 654 TIGRFAM PPR: pentatricopeptide repeat domain 66 99 IPR002885 -
Vvi4g612 654 TIGRFAM PPR: pentatricopeptide repeat domain 271 299 IPR002885 -
Vvi4g612 654 SUPERFAMILY TPR-like 162 524 IPR011990 GO:0005515
Vvi4g612 654 PANTHER BNAA02G27730D PROTEIN 94 268 - -
Vvi4g612 654 PANTHER BNAA02G27730D PROTEIN 269 597 - -
Vvi4g612 654 PANTHER BNAA02G27730D PROTEIN 21 97 - -
Vvi4g612 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Vvi4g612 654 Gene3D Tetratricopeptide repeat domain 431 541 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g612 - - - vvi:100249134 748.043
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g612 . . . . . . . . Cmo05g00344 . . Cma05g00341 . . . . . Bhi04g00070 . . . . . Lcy13g1845 . . . . . . . . . . Cone20ag0308 . . . Cme03g01561 . . . . . . . . . . . . . . Car05g00286 Cpe11g00286 . . . . . . . . Cla08g01378 . . . . . . Lsi08g01262 . Chy03g01071 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011939 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 0 1 1 27