Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g613 ATGGCGGAGGTGATATCGATGGAAGATATCAGAGCGACGGCCTCTACCCTTGGGATCGATGTTTCGAATATTGACTTCGATTCCATACGTCTCCCCCCTGGGGAAGATTTTGGCATCACAAGTGATGATGATCTTCATGAAGAGGATCCTCTTGAATACGATTCTGGTTTTGGTAACATCATTGTTGTGGATAATCTCCCTGTTGTTCCTCGTGAGAAATTTGAGAAGCTTGAAGGGGTTGTTCGCAAAATTTACAGTCAGATTGGTGTCATTAAGGAGGATGGACTTTGGATGCCTGTTGATTCTGATACCCAGAAAACATTGGGTTATTGCTTTATTGAGTATAATACCCCTCAGGAAGCCGAGCTTGCTCGGGAGAAGACCAATGGGTACAAGTTGGACAGGGCGCATATATTTGCTGTAAATATGTTTGATGACTTTGACAGGTTCATGAAAGTTCCTGATGAGTGGGCACCTCCTGAAACCAAGCCATATACCCCTGGGGAAAATTTACAACACTGGCTTACTGATGAAAAAGCAAGAGATCAGTTTGTGATTCGTGCTGGCTCAGACACGGAGGTTTTATGGAATGATGCAAGACATTTGAAGCCTGAGCCTGTTTACAAACGTGCTTACTGGACTGAGAGTTTTGTGCAGTGGTCCCCACTAGGGACTTACTTGGCAACAGTTCACAGGCAGGGTGCTGCTGTCTGGGGAGGTGCTACTGCCTTCAACCGCCTAATGCGTTATGCTCATCCCCAGGTTAAACTGATTGATTTCTCCCCTGGTGAGAAGTATTTGGTTACCTACAGCAGCCATGAACCAAGCAATCCTCGCGATACTCATAGGGTTGTTCTGAATGTGTTTGATGTGAGAACTGGAAAAGTGATGAGAGATTTCAAGGGAAGTATGGACGAATTTTCAGTTGGAGGAGCTGGGGGTGTTTCTGGGGTCTCTTGGCCTGTTTTCAGGTGGGGAGGCGGCAAAGAAGATAAGTACTTTGCCAGGATTGGGAAAAATGTGATCTCTGTCTATGAAACAGAAACGTTTTCTCTTATTGACAAGAAATCCTTGAAGGTTGAAAATGTTATGGACTTAAGTTGGTCACCAGCTGATCCCATTCTTGCCCTCTTTGTTCCTGAACTTGGTGGTGGGAATCAACCTGCTAGGGTGAGTCTGGTTCAAATCCCCAGTAAAGAGGAGTTGAGGCAGAAGAATCTCTTTAGTGTTAGTGACTGCAAAATGTACTGGCAAAGCAATGGGGACTACCTGGCTGTTAAGGTTGATCGATACACAAAAACTAAGAAAAGCACATACACTGGCTTTGAGCTTTTCCGAATTAAAGAAAGGGATATACCAATTGAGGTTTTGGAGCTTGAGAATAAGAATGACAAGATTATTGCATTTGCTTGGGAACCAAAAGGTCATAGGTTTGCGGTTATTCATGGGGATAGCCCAAGGCCTGATGTAAGTTTTTACACGATGCGTAGTGGCAGTAATACAGGCCGGGTCTCTAAACTCACTACTCTCAAGGGGAAGCAGGCAAATGCCCTTTTCTGGTCACCAGCTGGTCGCTATATCATACTTGCAGGGCTGAAGGGATTCAATGGACAGTTGGAATTTTACAATGTTGATGAGCTTGAAACCATGGCAACTGCTGAACATTTCATGGCTACAGATATTGAATGGGATCCTACTGGAAGGTATGTTGCAACTTCAGTTACTTCAGTTCATGAGATGGAAAATGGCTTTAACATATGGTCCTTCAACGGCAAGCTCCTGTATCGGATACTAAAGGATCACTTCTTCCAGTTCTTGTGGCGTCCACGACCACCATCCTTCTTGAGTCCCGAGAAAGAGGAAGAGATAGCAAAGAACTTGAAAAAGTACAGTAAGAAGTACGAGGCAGAGGACCAGGATGTCTCTATGTTATTAAGTGAGCAGGATCGTGAGAAGCGGAAGATGTTGAAGGATGAATGGGAAAGGTGGGTCAATGACTGGAAGCGGTGGCATGAGGAAGAGAAAGCCGAGAGGCAGAGGCTCAGGGATGGTGAAGCCAGTGACGAGGAAGAGGAGTACGAGGCTAAGGAAGTTGAAGTTGAGGAGCTGTTGGACGTCTCAGAGGAGGTGCTTTCTTTTGATTTGGATCAGGAGTGA 2157 45.2 MAEVISMEDIRATASTLGIDVSNIDFDSIRLPPGEDFGITSDDDLHEEDPLEYDSGFGNIIVVDNLPVVPREKFEKLEGVVRKIYSQIGVIKEDGLWMPVDSDTQKTLGYCFIEYNTPQEAELAREKTNGYKLDRAHIFAVNMFDDFDRFMKVPDEWAPPETKPYTPGENLQHWLTDEKARDQFVIRAGSDTEVLWNDARHLKPEPVYKRAYWTESFVQWSPLGTYLATVHRQGAAVWGGATAFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDTHRVVLNVFDVRTGKVMRDFKGSMDEFSVGGAGGVSGVSWPVFRWGGGKEDKYFARIGKNVISVYETETFSLIDKKSLKVENVMDLSWSPADPILALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDSPRPDVSFYTMRSGSNTGRVSKLTTLKGKQANALFWSPAGRYIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATSVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRKMLKDEWERWVNDWKRWHEEEKAERQRLRDGEASDEEEEYEAKEVEVEELLDVSEEVLSFDLDQE* 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7178803 7188084 + Vvi4g613 Vvi4g613 785392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g613 718 Gene3D - 179 381 IPR015943 GO:0005515
Vvi4g613 718 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 47 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vvi4g613 718 CDD RRM_eIF3B 58 142 IPR034363 -
Vvi4g613 718 PANTHER BNACNNG51870D PROTEIN 7 711 - -
Vvi4g613 718 SMART rrm1_1 60 141 IPR000504 GO:0003723
Vvi4g613 718 SUPERFAMILY RNA-binding domain, RBD 56 138 IPR035979 GO:0003676
Vvi4g613 718 Pfam Eukaryotic translation initiation factor eIF2A 405 605 IPR013979 -
Vvi4g613 718 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 7 711 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vvi4g613 718 Gene3D - 414 622 IPR015943 GO:0005515
Vvi4g613 718 MobiDBLite consensus disorder prediction 674 698 - -
Vvi4g613 718 Gene3D - 58 142 IPR012677 -
Vvi4g613 718 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 59 146 IPR000504 GO:0003723
Vvi4g613 718 PIRSF Transl_init_eIF3b 5 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vvi4g613 718 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 135 IPR000504 GO:0003723
Vvi4g613 718 Coils Coil 686 706 - -
Vvi4g613 718 SUPERFAMILY DPP6 N-terminal domain-like 216 599 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g613 K03253 - vvi:100244090 1430.62