Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g614 ATGCCATCAAGTGCTTGCAGCCCCTCTCCCAAAGGCCATGACCAAAGGGCATCTCTAGAAGTGGTTCACAAACACGGACCATGTTCGAAACTCAGACCACACAAGGCCAATTCTCCCTCTCACACCCAGATACTCGCCCAAGACGAGTCTCGCGTCGCCTCAATTCAATCAAGGCTAGCCAAGAACCTTGCAGGTGGAAGCAATTTAAAGGCCTCTAAGGCCACCCTCCCAAGCAAGTCCGCAAGCACACTCGGATCAGGCAACTATGTAGTGACAGTAGGCCTTGGCTCACCAAAAAGAGACCTCACTTTCATATTTGACACTGGGAGTGACCTCACTTGGACTCAATGTGAGCCCTGTGTAGGGTATTGTTACCAACAACGAGAACACATCTTCGATCCCTCCACATCCCTCTCTTACTCTAACGTCTCTTGTGACTCACCATCATGCGAAAAACTCGAGTCTGCCACCGGCAACTCTCCCGGCTGCTCATCCTCCACTTGTCTTTACGGCATACGATATGGTGACGGGTCCTACTCTATTGGATTCTTTGCTAGAGAAAAGCTTTCCTTGACATCCACAGATGTGTTCAATAATTTCCAATTCGGGTGTGGCCAAAATAACCGTGGTCTATTTGGTGGCACAGCAGGGTTGCTGGGATTAGCGCGTAATCCTCTATCCCTTGTGTCTCAGACAGCTCAAAAGTATGGCAAAGTTTTCTCCTACTGCCTCCCATCTTCCAGCAGCTCAACCGGATATCTTTCCTTTGGAAGTGGTGATGGAGATTCTAAAGCAGTGAAGTTTACCCCTCGATTGCCCCCAACAGTATACTCTAGTGTTCAGAAAGTTTTCCGGGAACTGATGTCCGATTATCCAAGGGTAAAGGGAGTTTCTATACTTGACACTTGCTATGACCTTAGCAAATATAAGACTGTGAAAGTACCCAAGATCATTCTTTACTTCAGTGGTGGTGCGGAGATGGACTTAGCTCCAGAAGGGATCATTTATGTTTTGAAGGTATCACAAGTCTGCCTGGCTTTTGCCGGAAACAGTGATGACGATGAAGTGGCCATAATAGGAAATGTGCAGCAAAAAACAATTCATGTGGTGTACGATGACGCTGAAGGGAGGGTTGGGTTCGCCCCAAGTGGCTGCAACTAA 1161 47.89 MPSSACSPSPKGHDQRASLEVVHKHGPCSKLRPHKANSPSHTQILAQDESRVASIQSRLAKNLAGGSNLKASKATLPSKSASTLGSGNYVVTVGLGSPKRDLTFIFDTGSDLTWTQCEPCVGYCYQQREHIFDPSTSLSYSNVSCDSPSCEKLESATGNSPGCSSSTCLYGIRYGDGSYSIGFFAREKLSLTSTDVFNNFQFGCGQNNRGLFGGTAGLLGLARNPLSLVSQTAQKYGKVFSYCLPSSSSSTGYLSFGSGDGDSKAVKFTPRLPPTVYSSVQKVFRELMSDYPRVKGVSILDTCYDLSKYKTVKVPKIILYFSGGAEMDLAPEGIIYVLKVSQVCLAFAGNSDDDEVAIIGNVQQKTIHVVYDDAEGRVGFAPSGCN* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7189958 7192597 + Vvi4g614 Vvi4g614 785393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g614 386 Gene3D Acid Proteases 265 386 IPR021109 -
Vvi4g614 386 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN, PUTATIVE-RELATED 271 385 - -
Vvi4g614 386 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN, PUTATIVE-RELATED 12 270 - -
Vvi4g614 386 Gene3D Acid Proteases 64 258 IPR021109 -
Vvi4g614 386 SUPERFAMILY Acid proteases 84 385 IPR021109 -
Vvi4g614 386 Pfam Xylanase inhibitor N-terminal 89 258 IPR032861 -
Vvi4g614 386 PANTHER ASPARTYL PROTEASES 12 270 IPR001461 GO:0004190|GO:0006508
Vvi4g614 386 PANTHER ASPARTYL PROTEASES 271 385 IPR001461 GO:0004190|GO:0006508
Vvi4g614 386 ProSiteProfiles Peptidase family A1 domain profile. 89 386 IPR033121 -
Vvi4g614 386 Pfam Xylanase inhibitor C-terminal 271 381 IPR032799 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g614 - - - vvi:100256004 742.651
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g614 Vvi9g944 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g614 . . . Bda03g00113 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe04g00099 . . Sed05g1816 . . . . . . . . Bhi09g03045 Tan01g3527 Cmetu07g1748 . Hepe01g1942 Mch11g0478 . . . . . . . . . . . Cme07g00147
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005907 2 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 0 1 1 1 2 2 2 36