Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g616 ATGGCCACTCCCATTTCCACCATCTTCCTCCTGAAGTTTCTCCTGTATTCTGCTCTTCTTTCCTCCAAGAGAGGCCTTGCTTTTCAAGGAAGAAAGACTGCACTCTCAACACCCAGTACTCTTCACAATGTCCATATCACTTCGCTGATGCCTTCAAGCGTTTGCAGCCCCTCTCCCAAAGGTGACGACAAAAGGGCATCTCTGGAAGTGATTCATAAACATGGACCATGCTCAAAACTCAGCCAAGACAAGGGTCGTTCTCCGTCTCGCACACAGATGCTCGACCAAGACGAGTCTCGGGTCAATTCAATTCGATCAAGGCTAGCCAAGAACCCTGCAGATGGAGGCAAATTGAAGGGCTCTAAGGTCACTCTACCAAGCAAGTCTGGAAGCACCATTGGCACAGGCAACTACGTTGTGACAGTAGGCCTCGGCACACCAAAGAGAGACCTCACTTTCATATTTGACACTGGGAGTGACCTCACTTGGACTCAATGTGAGCCTTGCGCAAGGTATTGCTACCATCAACAAGAACCCATCTTCAACCCCTCCAAGTCCACATCTTATACCAACATCTCCTGTAGCTCACCCACATGCGATGAACTCAAGTCCGGCACCGGCAACTCTCCTTCCTGCTCAGCCTCCACTTGTGTTTACGGCATACAGTATGGTGACCAGTCCTATTCTGTTGGATTCTTCGCTCAAGATAAGCTTGCCTTGACATCCACAGATGTGTTCAATAATTTCCTATTCGGGTGCGGCCAAAACAACCGTGGCCTATTTGTTGGCGTAGCTGGGCTGATAGGGCTGGGGCGAAACGCTCTATCCCTTATGTCTAAATATCCAAAGGCAGCTCCAGCTTCCATACTCGACACATGCTATGACTTTAGCCAATATGACACGGTGGACGTGCCCAAGATCAATCTATACTTCAGTGATGGTGCCGAGATGGACTTAGATCCCTCAGGGATCTTTTATATTTTGAACATATCACAAGTTTGCCTAGCCTTTGCGGGAAACAGTGATGCCACTGATATTGCCATCCTAGGAAATGTGCAGCAAAAGACATTTGATGTGGTGTACGACGTCGCTGGAGGGAGGATTGGATTCGCCCCGGGAGGCTGCGAGTAA 1131 49.07 MATPISTIFLLKFLLYSALLSSKRGLAFQGRKTALSTPSTLHNVHITSLMPSSVCSPSPKGDDKRASLEVIHKHGPCSKLSQDKGRSPSRTQMLDQDESRVNSIRSRLAKNPADGGKLKGSKVTLPSKSGSTIGTGNYVVTVGLGTPKRDLTFIFDTGSDLTWTQCEPCARYCYHQQEPIFNPSKSTSYTNISCSSPTCDELKSGTGNSPSCSASTCVYGIQYGDQSYSVGFFAQDKLALTSTDVFNNFLFGCGQNNRGLFVGVAGLIGLGRNALSLMSKYPKAAPASILDTCYDFSQYDTVDVPKINLYFSDGAEMDLDPSGIFYILNISQVCLAFAGNSDATDIAILGNVQQKTFDVVYDVAGGRIGFAPGGCE* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7244097 7247313 + Vvi4g616 Vvi4g616 785395

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g616 376 Gene3D Acid Proteases 272 376 IPR021109 -
Vvi4g616 376 Pfam Xylanase inhibitor N-terminal 138 283 IPR032861 -
Vvi4g616 376 Gene3D Acid Proteases 126 243 IPR021109 -
Vvi4g616 376 MobiDBLite consensus disorder prediction 82 99 - -
Vvi4g616 376 ProSiteProfiles Peptidase family A1 domain profile. 138 376 IPR033121 -
Vvi4g616 376 PANTHER ASPARTYL PROTEASES 43 279 IPR001461 GO:0004190|GO:0006508
Vvi4g616 376 PANTHER ASPARTYL PROTEASES 277 375 IPR001461 GO:0004190|GO:0006508
Vvi4g616 376 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN, PUTATIVE-RELATED 43 279 - -
Vvi4g616 376 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN, PUTATIVE-RELATED 277 375 - -
Vvi4g616 376 SUPERFAMILY Acid proteases 132 375 IPR021109 -
Vvi4g616 376 MobiDBLite consensus disorder prediction 76 101 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g616 - - - vvi:100266429 561.992
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g616 Blo01g01427 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01358 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005907 2 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 0 1 1 1 2 2 2 36