Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g618 ATGGCCATTCTTTGTCCTTCCACTGCCATCTACCATCTTCTCTTCTCTTTTCTTCTTCTGTTTTTCTTATGTTATGTGGGCAATACACCCGTCTGTGGAGATGCCAGAGACGGATATCACACCCTTGATATAAATTCACTGCTGCCTAAGAGCAATTGCACGGCACCAGTCGGAGGAGGGTCTCAAGGGCTACCAATAACATATAGTTATGGACCATGCTCGCAATTAGGCCAGAAGAAGTCTCCCAGTCGTCAGCAAATTTTTCTCCAAGATCGGTCCAGAGTTCGCTCTATTAACGCCAAAATCTTCGGCCAATATTCTACGCAAGAATCCAAAGACGGCTGGTCCCCAGAGTCTATGGACACTTTAAATGAAGATGGCCTTTTTCTTGTCAATGTTGGTTTTGGCACGCCCCAACAAAAATTTAATCTCATAATCGACACAGGCAGTGACACAACTTGGATACAGTGCAACTCATGTTCATTAGGGAATTGCCACAACAAGAAAACTTTTAACCCTTCCTTATCATCCTCTTATTCTAATCGTTCCTGCATCCCCTCTACGGACACGAACTATACCATGAAGTATGAAGATAACTCCTATTCCAAAGGAGTTTTCGTATGTGATGAGGTTACATTGAAGCCCGATGTATTCCCCAAGTTTCAATTTGGTTGCGGAGATAGTGGTGGTGGAGAGTTTGGCACAGCATCTGGGGTACTAGGCCTTGCAAAAGGGGAACAATATTCTCTGATATCTCAGACAGCTTCAAAGTTCAAAAAGAAATTTAGTTACTGTTTCCCACCTAAAGAACACACCCTAGGGTCTTTGTTGTTTGGGGAGAAAGCAATTTCTGCATCTCCCTCGCTGAAATTTACACAGCTTTTGAATCCACCTAGTGGGTTAGGGTATTTTGTTGAACTGATTGGTATAAGTGTTGCCAAAAAGCGATTGAACGTCTCTAGCTCATTGTTTGCATCACCTGGAACTATAATAGATTCTGGAACTGTCATCACTCGTCTTCCTACCGCAGCCTATGAAGCACTCCGCACTGCATTCCAACAGGAAATGTTGCACTGTCCCTCTATTTCTCCGCCGCCACAGGAAAAACTATTGGACACTTGCTATAATCTTAAGGGATGTGGGGGGAGAAACATAAAGTTACCGGAAATAGTACTACATTTTGTGGGAGAAGTGGACGTAAGTTTGCATCCATCAGGAATTCTTTGGGCCAATGGGGACCTAACTCAAGCTTGCTTGGCTTTCGCAAGAAAATCCAATCCTTCTCATGTAACCATCATCGGAAATAGACAACAAGTGTCTCTAAAAGTTGTGTATGACATAGAAGGGGGAAGGTTAGGATTTGGTAACGATTGCAAGCATTGA 1383 43.31 MAILCPSTAIYHLLFSFLLLFFLCYVGNTPVCGDARDGYHTLDINSLLPKSNCTAPVGGGSQGLPITYSYGPCSQLGQKKSPSRQQIFLQDRSRVRSINAKIFGQYSTQESKDGWSPESMDTLNEDGLFLVNVGFGTPQQKFNLIIDTGSDTTWIQCNSCSLGNCHNKKTFNPSLSSSYSNRSCIPSTDTNYTMKYEDNSYSKGVFVCDEVTLKPDVFPKFQFGCGDSGGGEFGTASGVLGLAKGEQYSLISQTASKFKKKFSYCFPPKEHTLGSLLFGEKAISASPSLKFTQLLNPPSGLGYFVELIGISVAKKRLNVSSSLFASPGTIIDSGTVITRLPTAAYEALRTAFQQEMLHCPSISPPPQEKLLDTCYNLKGCGGRNIKLPEIVLHFVGEVDVSLHPSGILWANGDLTQACLAFARKSNPSHVTIIGNRQQVSLKVVYDIEGGRLGFGNDCKH* 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7315580 7317297 - Vvi4g618 Vvi4g618 785397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g618 460 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 144 155 IPR001969 GO:0004190|GO:0006508
Vvi4g618 460 ProSiteProfiles Peptidase family A1 domain profile. 129 455 IPR033121 -
Vvi4g618 460 SUPERFAMILY Acid proteases 125 456 IPR021109 -
Vvi4g618 460 Gene3D Acid Proteases 117 279 IPR021109 -
Vvi4g618 460 PRINTS Pepsin (A1) aspartic protease family signature 135 155 IPR001461 GO:0004190|GO:0006508
Vvi4g618 460 PRINTS Pepsin (A1) aspartic protease family signature 329 340 IPR001461 GO:0004190|GO:0006508
Vvi4g618 460 Gene3D Acid Proteases 280 460 IPR021109 -
Vvi4g618 460 Pfam Xylanase inhibitor N-terminal 129 279 IPR032861 -
Vvi4g618 460 PANTHER ASPARTYL PROTEASE AED1-LIKE 16 459 - -
Vvi4g618 460 PANTHER ASPARTYL PROTEASES 16 459 IPR001461 GO:0004190|GO:0006508
Vvi4g618 460 Pfam Xylanase inhibitor C-terminal 303 455 IPR032799 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g618 - - - vvi:100255364 922.539
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g618 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma09g00391 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031934 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2