Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g62 ATGGCTGAAGAAGTACAGTACTCGTCTGGTACGGACGCTACCAACAAGCGTAAGTACGAGGACCAAACGACGCCGTCTCAGCCATCCACTCGCCGCCCCACCGGCTTCTCGGCTCCGATCTCCACTCCCTCTCCAGACTCCTCTCACGCCCCGCCCTCATACAACAGTGTTCCGCCTCCCGCAGATGAGATCCAGCTCGCCAAGCAGCGCGCGCAGGAGATCGCTGCTCGCCTTTTCAGCAACGCCAGCAACACCGAAGCTAAGCGCCCTCGCGTCGAGAATGGTGCCGGTGCTGGTGGGTTTGATTCTGGTGATAAGGGGTTCAGCTCTGCTCCTTCTGATGTTGGACAGAAGCCTATGATCTCGACTCCTTCGGCAATTCCAGTTTCTTATGGTTACCAGGGTACGAGCAAAAAGATTGATATCCCGAATGGGAGGGTTGGTGTTATTATTGGGAAAGGTGGAGAGACTATCAAGTATCTTCAGCTTCAGTCTGGAGCTAAGATTCAGGTCACTAGGGATATGGATGCGGATCCTAATTCCCCAACCCGGTTGGTGGAGCTCATGGGTACTCCGGACCAAATTGCGAAGGCAGAGCAATTGATTAACGATGTTCTTTCTGAGGCTGAAGCAGGGGGGTCTGGCATAGTTTCTCGAAGGCTAACTGGTCAGGCTGGGTCTGAACAATTTGTGATGAAAGTACCAAACAACAAGGTTGGTCTGATAATTGGTAAAGGTGGTGAGACCATTAAAAATATGCAAGCCAGGACAGGAGCTCGTATTCAGGTGATACCTTTGCATCTCCCCCCTGGTGATACATCAATGGAGAGAACTGTACAAATAGATGGCACCAGTGAACAGATTGAGTCTGCTAAACAGTTGGTCAATGAAGTCATCAGTGAGAATCGTATCAGAAATCCAGCAATGGCTGGAGGATATCCTCAGCAAGGCTACCAAGCCCGACCTCCATCGGGCTGGGGTGCCCCTCCTGGTGCTCCTCCAATGCAGCAACCTGGTTATAGCTATGCGCAGCCTGGATCCTATCCTGGTCCTTCACCCCAGTATAACATGTCTCAGCCAGCTTATGCCGGCTATTCTCAGCCTAATGCCACTGGTTGGGACCAGACGGCTGCCCCACCAAGTCAGCAGACAACTCCAGGAAGTGGCTATGATTACTATGGCCAACAGCAGACTCAACAGCAGCAGCAAGCCCATGGTGGTCCTTCTGGTCCAGCTGATAACTCTGGTTACAATTACAATCAACCACCAGCTTCTGGATATAATCAACAGGGGCAAGGATATGATCAGCAGCAAGGTTATAATTCTGCAACTGGTTATGGTAATGTGGCCAACCCAACACAAGAGGGGCACACTACCTCCTATGGAGCTCAAGGGGAGACTGGTCAAGCACCACCTTCTTTATCCACCTCAAGGATCTAA 1440 51.53 MAEEVQYSSGTDATNKRKYEDQTTPSQPSTRRPTGFSAPISTPSPDSSHAPPSYNSVPPPADEIQLAKQRAQEIAARLFSNASNTEAKRPRVENGAGAGGFDSGDKGFSSAPSDVGQKPMISTPSAIPVSYGYQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPTRLVELMGTPDQIAKAEQLINDVLSEAEAGGSGIVSRRLTGQAGSEQFVMKVPNNKVGLIIGKGGETIKNMQARTGARIQVIPLHLPPGDTSMERTVQIDGTSEQIESAKQLVNEVISENRIRNPAMAGGYPQQGYQARPPSGWGAPPGAPPMQQPGYSYAQPGSYPGPSPQYNMSQPAYAGYSQPNATGWDQTAAPPSQQTTPGSGYDYYGQQQTQQQQQAHGGPSGPADNSGYNYNQPPASGYNQQGQGYDQQQGYNSATGYGNVANPTQEGHTTSYGAQGETGQAPPSLSTSRI* 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 700691 706374 - Vvi4g62 Vvi4g62 784841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g62 479 MobiDBLite consensus disorder prediction 20 51 - -
Vvi4g62 479 MobiDBLite consensus disorder prediction 307 479 - -
Vvi4g62 479 MobiDBLite consensus disorder prediction 1 121 - -
Vvi4g62 479 PANTHER FAR UPSTREAM ELEMENT-BINDING PROTEIN 2-LIKE ISOFORM X1 79 454 - -
Vvi4g62 479 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 79 454 - -
Vvi4g62 479 CDD KH-I 230 295 - -
Vvi4g62 479 Gene3D K Homology domain, type 1 131 222 IPR036612 GO:0003723
Vvi4g62 479 Gene3D K Homology domain, type 1 223 327 IPR036612 GO:0003723
Vvi4g62 479 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 137 213 IPR036612 GO:0003723
Vvi4g62 479 Pfam KH domain 231 297 IPR004088 GO:0003723
Vvi4g62 479 Pfam KH domain 139 204 IPR004088 GO:0003723
Vvi4g62 479 ProSiteProfiles Type-1 KH domain profile. 135 202 - -
Vvi4g62 479 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 230 302 IPR036612 GO:0003723
Vvi4g62 479 MobiDBLite consensus disorder prediction 340 479 - -
Vvi4g62 479 SMART kh_6 134 207 IPR004087 GO:0003676
Vvi4g62 479 SMART kh_6 226 300 IPR004087 GO:0003676
Vvi4g62 479 CDD KH-I 137 202 - -
Vvi4g62 479 ProSiteProfiles Type-1 KH domain profile. 227 295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g62 K13210 FUBP; far upstream element-binding protein - vvi:100259454 888.641
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g62 . . . . . . . . Cmo05g00109 Cmo12g00572 . Cma05g00102 . Car12g00580 Sed08g1760 Cpe07g00553 . Bhi04g00496 Tan02g1648 Cmetu03g0500 . Hepe08g1383 . Lcy13g2177 . . . . . . . Cone4ag1652 . Cone17ag0917 Cone20ag0260 . . . . Blo17g00293 Blo18g00287 . Bda13g01608 Bpe14g00257 . . . . . . . Cma12g00631 . Car05g00374 Cpe11g00082 . . . . . . . . Cla08g01021 Cam08g1470 Cec08g1048 Cco08g1172 Clacu08g1174 . Cre08g0956 Lsi08g01575 Csa02g01846 Chy03g01638 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007208 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 2 1 1 37