Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g623 ATGGGATATATTAGTTCGGTTTTGTCATCCTCAAGTCAAGTTCACGTTGATGATGGGCCTGTTAGCGGTGGCGGTCTCAGTCATAATGGGAAGTTCAGCTACGGATATGCTAGTTCTCCCGGGAAAAGGTCTTCAATGGAAGATTTTTATGAGACAAGAATTGATGGTGTTGAAGGAGAGATAGTTGGCCTTTTTGGAGTCTTTGATGGTCATGGAGGTGCTCGAGCAGCTGAATATGTTAAACAAAACCTTTTTAGTAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATCAGAATAGAGATGCTGGATCAACTGCCTCCACCGCTATCCTTGTTGGTGACCGTTTGCTGGTTGCAAATGTTGGGGACTCCAGAGCTGTTATCTGCAGGGGTGGTAATGCCATTGCTGTTTCTCGAGATCACAAGCCAGACCAAACTGATGAGCGGCAGCGTATTGAGGATGCTGGAGGGTTTGTGATGTGGGCTGGAACTTGGAGGGTTGGGGGTGTTCTTGCTGTTTCTCGTGCATTTGGTGATAGACTCTTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAGGAGGAAAAGATTGACAGCTCCCTCGAGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAGAGGCTGATGCAGGAAGCATATCAGAGAGGCAGTGCAGATAACATTACCTGTGTTGTTGTGCGTTTCTTGGCCAACCAAGGGGGTTCGTCCCTTTCCAGCCCCGCATAA 879 46.3 MGYISSVLSSSSQVHVDDGPVSGGGLSHNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKQNLFSNLIRHPKFISDTKSAIADAYKHTDSEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVTNEEAVAMIKPIPDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGGSSLSSPA* 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7643368 7650501 + Vvi4g623 Vvi4g623 785402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g623 292 CDD PP2Cc 32 279 IPR001932 -
Vvi4g623 292 Gene3D - 25 283 IPR036457 -
Vvi4g623 292 PANTHER ALPHABET, ISOFORM E-RELATED 4 287 - -
Vvi4g623 292 MobiDBLite consensus disorder prediction 1 22 - -
Vvi4g623 292 ProSitePatterns PPM-type phosphatase domain signature. 64 72 IPR000222 GO:0043169
Vvi4g623 292 SUPERFAMILY PP2C-like 28 279 IPR036457 -
Vvi4g623 292 MobiDBLite consensus disorder prediction 1 17 - -
Vvi4g623 292 Pfam Protein phosphatase 2C 62 272 IPR001932 -
Vvi4g623 292 ProSiteProfiles PPM-type phosphatase domain profile. 33 279 IPR001932 -
Vvi4g623 292 SMART PP2C_4 23 277 IPR001932 -
Vvi4g623 292 PANTHER PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C 4 287 - -
Vvi4g623 292 SMART PP2C_SIG_2 44 279 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g623 Vvi11g589 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g623 K17506 - vvi:100251928 576.63