Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g623 | ATGGGATATATTAGTTCGGTTTTGTCATCCTCAAGTCAAGTTCACGTTGATGATGGGCCTGTTAGCGGTGGCGGTCTCAGTCATAATGGGAAGTTCAGCTACGGATATGCTAGTTCTCCCGGGAAAAGGTCTTCAATGGAAGATTTTTATGAGACAAGAATTGATGGTGTTGAAGGAGAGATAGTTGGCCTTTTTGGAGTCTTTGATGGTCATGGAGGTGCTCGAGCAGCTGAATATGTTAAACAAAACCTTTTTAGTAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATCAGAATAGAGATGCTGGATCAACTGCCTCCACCGCTATCCTTGTTGGTGACCGTTTGCTGGTTGCAAATGTTGGGGACTCCAGAGCTGTTATCTGCAGGGGTGGTAATGCCATTGCTGTTTCTCGAGATCACAAGCCAGACCAAACTGATGAGCGGCAGCGTATTGAGGATGCTGGAGGGTTTGTGATGTGGGCTGGAACTTGGAGGGTTGGGGGTGTTCTTGCTGTTTCTCGTGCATTTGGTGATAGACTCTTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAGGAGGAAAAGATTGACAGCTCCCTCGAGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAGAGGCTGATGCAGGAAGCATATCAGAGAGGCAGTGCAGATAACATTACCTGTGTTGTTGTGCGTTTCTTGGCCAACCAAGGGGGTTCGTCCCTTTCCAGCCCCGCATAA | 879 | 46.3 | MGYISSVLSSSSQVHVDDGPVSGGGLSHNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKQNLFSNLIRHPKFISDTKSAIADAYKHTDSEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVTNEEAVAMIKPIPDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGGSSLSSPA* | 293 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 7643368 | 7650501 | + | Vvi4g623 | Vvi4g623 | 785402 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g623 | 292 | CDD | PP2Cc | 32 | 279 | IPR001932 | - | |
Vvi4g623 | 292 | Gene3D | - | 25 | 283 | IPR036457 | - | |
Vvi4g623 | 292 | PANTHER | ALPHABET, ISOFORM E-RELATED | 4 | 287 | - | - | |
Vvi4g623 | 292 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Vvi4g623 | 292 | ProSitePatterns | PPM-type phosphatase domain signature. | 64 | 72 | IPR000222 | GO:0043169 | |
Vvi4g623 | 292 | SUPERFAMILY | PP2C-like | 28 | 279 | IPR036457 | - | |
Vvi4g623 | 292 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Vvi4g623 | 292 | Pfam | Protein phosphatase 2C | 62 | 272 | IPR001932 | - | |
Vvi4g623 | 292 | ProSiteProfiles | PPM-type phosphatase domain profile. | 33 | 279 | IPR001932 | - | |
Vvi4g623 | 292 | SMART | PP2C_4 | 23 | 277 | IPR001932 | - | |
Vvi4g623 | 292 | PANTHER | PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C | 4 | 287 | - | - | |
Vvi4g623 | 292 | SMART | PP2C_SIG_2 | 44 | 279 | IPR001932 | - |
Event-related genes

Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g623 | K17506 | - | vvi:100251928 | 576.63 |