Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g625 ATGGCGTCCAAGCTCTGCGACTCCTGTAAATCGGCCCCGCCCACTCTCTTCTGCCGTGCCGACTCCGCCTTTCTGTGCGTGGCCTGTGACTCCAAGGTCCATGCGGCCAACAAGCTCGCCTCTCGCCACGCGCGGGTGTGGATGTGCGAGGTCTGCGAGCAGGCTCCTGCCCATGTCACGTGCAAGGCCGACGCCGCCGCTCTCTGCGTCACATGCGACCGCGATATCCACTCCGCCAACCCTCTCGCTCGCCGCCACGAGCGAGTTCCGGTGGTGCCGTTCTACGACTCTGCCGCCGCTGCTGCTAAGTCCAACGCCGTCAACCTTCTACTCGCTGAGAGTTCAGATCTGAATTCGAGTCATTACATGTTCTCTGACATAGATCCGTATCTGGATCTGGATTATCCGTCGATGGATCCAAAGCTTCAATCGCAGCAGCAGCAGCAAAGTTCGGGAACTGATGGAGTTGTTCCAGTACAGAACAAGAGTGTTCAAGCTCCATTGGTGAACGACAACTGCTTTGACATGGATTTCTCAGGCTCCAAGTCCTTCTACAACGGACAATCTCTCAGCCAAAGTGTATCGTCCTCCTCTTTAGAAGTGGGAGTCGTGCCAGATGGTAACGCCATGGTTGATGTAACAAACCCTTTCGGTAGATCGATGAACACCGGATCCGAATCAGCTAATCAAACTGCTCAAATTTCATCAGGAATAGATCGAGAAGCTAGGGTTTTGAGGTACAGAGAGAAGAGAAAGAACAGAAAGTTTGAGAAAACGATCCGATACGCATCACGAAAAGCCTACGCCGAAACGAGACCGAGAATCAAGGGAAGGTTCGCGAAGCGATCGGAGATCGAAGTCGATTACAGCTCGTCTGGAGCACTGACCGCCGACTCAGGATACGGCGTCGTTCCATCGTTTTGA 924 53.79 MASKLCDSCKSAPPTLFCRADSAFLCVACDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVVPFYDSAAAAAKSNAVNLLLAESSDLNSSHYMFSDIDPYLDLDYPSMDPKLQSQQQQQSSGTDGVVPVQNKSVQAPLVNDNCFDMDFSGSKSFYNGQSLSQSVSSSSLEVGVVPDGNAMVDVTNPFGRSMNTGSESANQTAQISSGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSEIEVDYSSSGALTADSGYGVVPSF* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7669423 7671321 - Vvi4g625 Vvi4g625 785404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g625 307 MobiDBLite consensus disorder prediction 139 158 - -
Vvi4g625 307 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Vvi4g625 307 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Vvi4g625 307 CDD Bbox1_BBX-like 49 91 - -
Vvi4g625 307 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 307 - -
Vvi4g625 307 MobiDBLite consensus disorder prediction 135 158 - -
Vvi4g625 307 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Vvi4g625 307 CDD Bbox1_BBX-like 5 48 - -
Vvi4g625 307 SMART bboxneu5 49 91 IPR000315 GO:0008270
Vvi4g625 307 SMART bboxneu5 1 48 IPR000315 GO:0008270
Vvi4g625 307 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 307 IPR045281 GO:0009909
Vvi4g625 307 Pfam CCT motif 240 282 IPR010402 GO:0005515
Vvi4g625 307 ProSiteProfiles CCT domain profile. 240 282 IPR010402 GO:0005515
Vvi4g625 307 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14768 PF00643 zf-B_box 4.20E-07 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g625 - - vvi:100246796 573.933