Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g627 ATGGGTATCCTGTTCACTCGAATGTTTTCTTCAGTCTTCGGCAACAGAGAAGCTCGAATTCTCGTTCTCGGCCTAGACAATGCTGGAAAAACCACTATTCTCTATCGGCTTCAAATGGGTGAGGTGGTCTCCACGATTCCAACAATTGGGTTTAATGTGGAAACAGTTCAGTATAACAACATCAAGTTTCAAGTCTGGGATCTGGGTGGACAGACAAGTATCAGGCCATACTGGAGATGTTATTTCCCAAATACTCAAGCAATAATTTATGTTGTTGACTCAAGTGACACTGATAGAATTGTAATAGCCAAGGATGAATTTCATGCAATTTTGGAGGAAGAAGAATTGAAAGGCGCCATTGTCCTCATCTTTGCAAACAAGCAGGATCTTCCTGGTGCACTTGATGATGCTGCTTTAACAGAAGCTTTGGAGTTGCACAAGATAAAAAACCGCCAATGGGCTATTTTTAAAACTTGCGCCATAAAGGGTGAAGGCCTCTACGAGGGCTTGGACTGGTTGAGTAATATTCTCAAGTCAGGTGGCTAA 546 42.31 MGILFTRMFSSVFGNREARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRIVIAKDEFHAILEEEELKGAIVLIFANKQDLPGALDDAALTEALELHKIKNRQWAIFKTCAIKGEGLYEGLDWLSNILKSGG* 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7704571 7722920 - Vvi4g627 Vvi4g627 785406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g627 181 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 181 IPR024156 GO:0005525
Vvi4g627 181 CDD Arl1 19 175 - -
Vvi4g627 181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 178 IPR027417 -
Vvi4g627 181 TIGRFAM small_GTP: small GTP-binding protein domain 16 164 IPR005225 GO:0005525
Vvi4g627 181 Gene3D - 5 180 IPR027417 -
Vvi4g627 181 PANTHER ADP-RIBOSYLATION FACTOR 3 1 181 - -
Vvi4g627 181 SMART sar_sub_1 1 177 IPR006689 GO:0003924|GO:0005525
Vvi4g627 181 Pfam ADP-ribosylation factor family 5 175 IPR006689 GO:0003924|GO:0005525
Vvi4g627 181 SMART arf_sub_2 1 181 - -
Vvi4g627 181 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Vvi4g627 181 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Vvi4g627 181 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Vvi4g627 181 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Vvi4g627 181 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g627 K07942 ARL1; ADP-ribosylation factor-like protein 1 - vvi:100241677 356.681
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g627 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000063 9 18 10 8 7 8 7 10 8 7 8 7 18 10 10 19 7 15 6 8 11 10 12 9 4 7 7 18 10 9 297