Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g631 ATGCAGGCCAACTTTATGATCGGTCTTGGAAGCAAAGCTCGGGTGCCCATCATTTCATTTTCTGCAACAAGTCCTTCTCTTTCTTCGCTCCAGAGTCAATATTTTGTCCGAGCCACCCTAAATGACTCAGCTCAAGTACCAGCAATAAAGGCAATTGTCCAAGCCTTTGGATGGAGAGAAGTTGTGCTTATTTGCGTGGACAATGAGTATGGCAATGGAGTCATACCGTCTCTGACTAGTGCCTTGCAGGAGGTGGACACCCATGTGACCTACCGGAGCGCCATTCATCTATCGGCAACTGATGATCAAATCGTTAAAGAACTTTACAAGTTGATGACGATGTCAACTAGGGTTTTCATTGTGCATATGTTTACACCTCTTGGCTCCCGGCTTTTTACCAAAGCAAATGAGGTTGGAATGATGGAAGAAGGCTATGTTTGGATACTAACTGATGGGATGACTGACTTCTTGAGTACTTTGGACCCTTCAGCCATTGATTCCATGCAAGGGGTGTTGGGCGTCAAGCCTCATGTTCCAAGAACCAAAGAGCTTGACAGTGTTAAAATCAGATGGAAAAAGAAATTCCAAGAAGAATATCCAATCAATGAAATCTCTGAGCTGAACATTTTTGGACTCCGGGCATATGATGCTGCTTCTGCACTAGCCATAGCAGTTGAAAAACTTAGCGTGGGAAACTTCAGCTTCCAAAAGACTAATATTTCCAGAGATTCAATCAGTCTTGAGAGTATTAGAGTTTCCCCAATTGGACCAAATATTCTCCATTCACTATTAAGTACTCAATTCAGAGGCCTTACCGGACATTTTCAAATTGTAGATGGGCAACTACACTCATCAGCTTTCCAGATAGTTAATGTGAATGGTGAAGGGGAAAAAGGGGTTGGATTTTGGACACAAGAGAATGGAATTGTAAGAAGACCGAATTCTACTTCTAAGGTCAATCTAAGAGCCATTACATGGCCAGGAGAATCTACTTCTGTTCCTAAAGGTTGGGTGCTTCCTACCAACGGAAAGAAGTTGAAGATAGGAGTTCCAGTGAAGGAGGGTTTTAGTGAATTTGTGAAGGTGATGCGAGATCCTATCACTAATACAACAAAGGTCACTGGCTACTGCATTGCTATCTTCGATGCCGTAATGGCAACATTACCATATGCTGTTCCTTACGAATACGTTCCCTTTGAGACACCTGATGGAAATGCTGCTGGTAACTACGATGAATTGATATCTCAAGTATATTTTCAGAAGTATGACGCTGTGGTGGGAGATACTACTATTCTAGCGAACAGGTCCTTGTATGTAGACTTCACACTACCTTACACCGAGTCTGGCGTATCAATGATGGTGCCCATCATCGATAACAGAAGTAAAAGTGCATGGGTCTTTTTGAAGCCATTAACTTGGGACCTTTGGGTGACAAGTGCTTGTTTCTTTGTCTTCATTGGCTTTGTGATTTGGACTCTTGAACATCGAATAAATGAAGATTTCAGAGGGCCTCGTTCACATCAAGTTGGCACAATTTTCAGCTTCTCCTTCTCAACATTGGTGTCTGCTCAGAAGGAGAGAATTGTCAGCAACTTGGCTCGGTTCGTGGTGATCATATGGTTTTTTGTGGTGCTGATTCTTACTCAAAGTTACACGGCCAGCTTGACTTCGATGCTAACGGTTCAACAGCTCAAACCGACTATAACTGACATAAACGAGCTCATAAGAACAGGGCAGCGCGTGGGCTACCAAAATGGCTCCTTCATTCTTGCATTTTTGGAACGGATGAAATTCCATGAATCGAACCTTGTAATATACAATTCTCTTGAACAATTAGATGAATTATTTTCAAAGGGGAGCCAAAAAGGTGGCATTGCTGCTGCATTTGATGAAATCCCTTACATGAAGCTTTTTCTAGCAAAATATTGCTCCAAATATACTGCGGTTCAGCCAACGTACAAGTTCGATGGTTTTGGATTTGTCTTCCCAAAGCATTCGCCTCTGGTTTCTGACGTTTCAATGCAAATCTTAAATGTGACTGAGGGAGATCAAATGGCGAAAATTGAGCAAGCATGGTTTGGGCAGAATTCGAGTTGCCCAGGGCTCAACAGCTCGCTGTCTTCAGACAGCATCGGAGTCGATAGTTTTTGGGGCCTATTCCTTATTGCTGGAGTGGCTTCATCTGCAGCTCTCATCATACGCATGGCCACTTTCCTTTATGAAAACACAGATACTTTGGTACAATTGGATCCCCCAGCTTCAGTATGGAGAAAAATTAAAGCCTTGGCAACCCTCTTTGATAACAAGGACCTCAGCTCCCATAATTTCAGAAAAAGTGAAATGGGAGATAGAAGTGGCACCAATGGCATGGATGCAGCGACTGCCTCTCCAGCCACAAACTACCCGCCGAGTCCATCAAGCCTTTCAGTCCAAACACAGAGTAATTTTGCTTTCTCCAGAGACCAAGCAACACCTGCTTCCGAATATGGTGATCAAATGAGTCCAAATGGGCAGACACCTCCTGAGATAGCATTTGGTATCGAGCTTGCCAATTCAAAGCAAGAGCTGAAAGTACCTGAAGTAGTTCATATGGCCATGGCACAAAACACAACAATACCAGTTAAAGTGGGAGTGGTTCTTGACATGGATACATGGCTGGGGAAGATGGGTTTGAGTTGCATCTCCATGGCACTCTCAGACTTCTATGCTTATCATGGGCACTACAAGACTAGGCTGATTCCCAAAATCAGAGATTCCAAAAGAGATGTTGTGGGTGCAGCTGCAGCAGCTCTATATTTATTACAAAATGAGGAAGTTCAAGCCATCATAGGACCAGCATCCTCCCTGCAAGCCAACTTTGTCATTGGTCTCGGAGACAAGGCTCATGTGCCCATCATTTCATTTTCTGCAACTAGTCCTTCTCTTTCTTCGCTCCGGAGTCAATATTTTGTCCGAGCCACACTGAATGACTCAGCACAAGTACCAGCTATAAGGGCAATTGTCCAAGCCTTTGGGTGGAGACAAGTTGTGCTCATTTACTTGGACAACGAGTACGGAAATGGAGTTATACCGTATCTTACTGATGCCTTGCAAGAGATTGACACCCGTATCTCCTACAGGAGCGTCATTCATCCATTAGCCACAGATGATCAAATCCTCGAAGAGCTTTACAAGTTGATGACAATGCCAACCAGAGTTTTCATTGTACACATGTTTGCACCTATAGGCCCACGACTTTTTGTCAGAGCGAACGAGATTGGAATGATGGAAGAAGGTTATGTATGGATTCTAACTGATGGGTTAACTGATATCTTGGGTACTTTGGATCCATCTGTCATTGATTCAATGCAAGGAGTGTTGGGGGTGAAGCCTCATGTTCCAAGATCGAAAAAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGGAAATCCAACAAGAATATCCAACAAATGAAAGCTTTGAGCTGAACATTTTTGGACTCTGGGCTTATGATGCTGCTTGTGGGCTAGCCATGGCAGTTGAAAAACTTGGGGCAACAAACTTCAGATTCCAAAAGTCTAATTTTTCCAGAAATTCAACCGATCTTGATACTGTAGGAGTCTCCCTAATTGGTCCAAATCTTCTCCAATCACTATTATATACTAGATTTAGAGGCCTCAGTGGAGATTTTCAAATTGTTAACAGGCAACTACAGTCATCAGCTTTTGAGGTAGTGAATGTGATCGGCAAGGGAGAAAGAGGGGTTGGATTTTGGACACCAGAGAATGGAACTGTAAGAAAGTTGGATTCTACTTCCAAGCCCAATCTAGGAACAATCGTATGGCCGGGAGAATCTCCCTCCATCCCTAAAGGTTGGGTCCTTCCAACCAATGGGAAGAAGTTGAGAATAGGAGTACCAGTCACCAAGGGTTTTGGTGAATTTGTAAAGGTGACGCGAGATCCTAGTAGTAACGCAACGAAGGTCAGTGGATTTTCCATAGCAGTCTTCGATGCAGTGATGGCAGCATTACCATATGCTGTTCCTTATGAGTACATTCCCTTCCAGACGCCTGATGGCAATCCAGCGGGTGATGACAACGATTTGATATATCAAGTATATCTCCAGAAGTATGATGCTGTGGTGGGAGCTATTACTATTCTAGCGAACAGGTCCTTGTATGTAGACTTTACACTACCTTACACAGAATCTGGGGTGTCAATGGTCGTGCCCACTATAGATGAAAGAAAAGAAAATGCATGGGTTTTCTTGAAGCCACTTACTTGGGACCTTTGGGTGACAAGCTTTTGTTTCTTCGTATTCATTGGCTTTGTGATTTGGGTTCTTGAACATCGAGTAAATAAAGACTTCAGAGGGCCTCGTTCATATCAAGTTGGCACTATCTTCTGGTTTTCATTCTCAACATTGGTGTTTGCTCAGAATGAGAGAATTGTCAGCAACTTGGCTCGGATTGTGATGATCGTGTGGTTTTTTGTGGTGCTAATTCTTACTCAAAGTTACACAGCCAGCTTGACTTCAATGTTAACAGTTCGACAACTCAACCCAACTATCACCGATACAAATGAGCTCATAAAGAAGGGGGAGCGTGTAGGTTGCCAATATGGCTCTTTCATTTATGAATTCTTGATCAAGTCGATGAAATTTGAAGAGTCCAAGCTTGTAAACTATAATTCAACAGAAGAACTGGATGAGTTATTTTCAAAAGGTGGAATTGCTGCTGCATTTGATGAAATCCCTTGCATTAAGATTTTCCTTGCAAAATATTGCTCCAAATACACTGCAGTCGGACCAATATACAAGTTTGATGGGTTTGGATTTGTCTTTCCAAAGGGTTCACCCCTTGTAGCGGATGTTTCAAGGAAAGTTTTAAGCGTGACCGAGGGAGCTAAAATGTCACAATTTGAGAAGGCATGGTTTGGGCAAATACCCAGTTGTCCAGAGCTCACCAGCTCAGTTTCTTCAAACAGCATCAGCCTTAATAGCTTTTGGGGCCTATTCCTCATTGCTGGAGTCACTTCATTCGTAGCTCTCATCACATGCATCACCATATTCCTTCATGAAAATAGAGAAGCCTTAATAAACTTGAATCCCCCATCTTCCAGATGGAGAAAAATTAAAGCCATGGCGACACTCTTTGATGAGAAAGATCTCAGGTCCCATACCTTTAGAAAAAGTGATCAACTTCCAGACAAGCAGCATCAAGGCCATGGATGCAGTTACAGCCTCGCCAGCTACACCAACTGCCCTCCAAGTCCATCAAGCCTTTTGATCCCAACACACAGCAATTTTGCTTTCTTCAGTGAACAAGGAACGCCGTCTTCTGGACATGGTGATCCAGTCAGTCCAAATCGACCGATGTCTCCACATATATTGTTTGAATATGAGCTTGCTAATATAAATCACGAGCAAATTAACAAGATGCCATGCCCCAAGATCCTCTCCAAGGGCGTGACGATCAATTCACACATCAAGCCCGAAAGCTCAAAGTGTAAATTGAATATTGTTGAGAATAATTCTAGAAGCTTTTCTTAG 5529 42.94 MQANFMIGLGSKARVPIISFSATSPSLSSLQSQYFVRATLNDSAQVPAIKAIVQAFGWREVVLICVDNEYGNGVIPSLTSALQEVDTHVTYRSAIHLSATDDQIVKELYKLMTMSTRVFIVHMFTPLGSRLFTKANEVGMMEEGYVWILTDGMTDFLSTLDPSAIDSMQGVLGVKPHVPRTKELDSVKIRWKKKFQEEYPINEISELNIFGLRAYDAASALAIAVEKLSVGNFSFQKTNISRDSISLESIRVSPIGPNILHSLLSTQFRGLTGHFQIVDGQLHSSAFQIVNVNGEGEKGVGFWTQENGIVRRPNSTSKVNLRAITWPGESTSVPKGWVLPTNGKKLKIGVPVKEGFSEFVKVMRDPITNTTKVTGYCIAIFDAVMATLPYAVPYEYVPFETPDGNAAGNYDELISQVYFQKYDAVVGDTTILANRSLYVDFTLPYTESGVSMMVPIIDNRSKSAWVFLKPLTWDLWVTSACFFVFIGFVIWTLEHRINEDFRGPRSHQVGTIFSFSFSTLVSAQKERIVSNLARFVVIIWFFVVLILTQSYTASLTSMLTVQQLKPTITDINELIRTGQRVGYQNGSFILAFLERMKFHESNLVIYNSLEQLDELFSKGSQKGGIAAAFDEIPYMKLFLAKYCSKYTAVQPTYKFDGFGFVFPKHSPLVSDVSMQILNVTEGDQMAKIEQAWFGQNSSCPGLNSSLSSDSIGVDSFWGLFLIAGVASSAALIIRMATFLYENTDTLVQLDPPASVWRKIKALATLFDNKDLSSHNFRKSEMGDRSGTNGMDAATASPATNYPPSPSSLSVQTQSNFAFSRDQATPASEYGDQMSPNGQTPPEIAFGIELANSKQELKVPEVVHMAMAQNTTIPVKVGVVLDMDTWLGKMGLSCISMALSDFYAYHGHYKTRLIPKIRDSKRDVVGAAAAALYLLQNEEVQAIIGPASSLQANFVIGLGDKAHVPIISFSATSPSLSSLRSQYFVRATLNDSAQVPAIRAIVQAFGWRQVVLIYLDNEYGNGVIPYLTDALQEIDTRISYRSVIHPLATDDQILEELYKLMTMPTRVFIVHMFAPIGPRLFVRANEIGMMEEGYVWILTDGLTDILGTLDPSVIDSMQGVLGVKPHVPRSKKLESFKIRWKREIQQEYPTNESFELNIFGLWAYDAACGLAMAVEKLGATNFRFQKSNFSRNSTDLDTVGVSLIGPNLLQSLLYTRFRGLSGDFQIVNRQLQSSAFEVVNVIGKGERGVGFWTPENGTVRKLDSTSKPNLGTIVWPGESPSIPKGWVLPTNGKKLRIGVPVTKGFGEFVKVTRDPSSNATKVSGFSIAVFDAVMAALPYAVPYEYIPFQTPDGNPAGDDNDLIYQVYLQKYDAVVGAITILANRSLYVDFTLPYTESGVSMVVPTIDERKENAWVFLKPLTWDLWVTSFCFFVFIGFVIWVLEHRVNKDFRGPRSYQVGTIFWFSFSTLVFAQNERIVSNLARIVMIVWFFVVLILTQSYTASLTSMLTVRQLNPTITDTNELIKKGERVGCQYGSFIYEFLIKSMKFEESKLVNYNSTEELDELFSKGGIAAAFDEIPCIKIFLAKYCSKYTAVGPIYKFDGFGFVFPKGSPLVADVSRKVLSVTEGAKMSQFEKAWFGQIPSCPELTSSVSSNSISLNSFWGLFLIAGVTSFVALITCITIFLHENREALINLNPPSSRWRKIKAMATLFDEKDLRSHTFRKSDQLPDKQHQGHGCSYSLASYTNCPPSPSSLLIPTHSNFAFFSEQGTPSSGHGDPVSPNRPMSPHILFEYELANINHEQINKMPCPKILSKGVTINSHIKPESSKCKLNIVENNSRSFS* 1843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7856757 7897638 + Vvi4g631 Vvi4g631 785410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g631 1842 Gene3D - 345 464 - -
Vvi4g631 1842 Gene3D - 1293 1411 - -
Vvi4g631 1842 CDD PBP1_GABAb_receptor_plant 1 313 IPR044440 -
Vvi4g631 1842 Pfam Bacterial extracellular solute-binding proteins, family 3 370 695 IPR001638 -
Vvi4g631 1842 Pfam Bacterial extracellular solute-binding proteins, family 3 1318 1640 IPR001638 -
Vvi4g631 1842 Gene3D - 1201 1292 - -
Vvi4g631 1842 Gene3D - 249 344 - -
Vvi4g631 1842 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 873 1739 - -
Vvi4g631 1842 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 788 - -
Vvi4g631 1842 SUPERFAMILY Periplasmic binding protein-like II 321 696 - -
Vvi4g631 1842 Gene3D - 991 1156 - -
Vvi4g631 1842 Gene3D - 43 207 - -
Vvi4g631 1842 Pfam Ligand-gated ion channel 1641 1670 IPR001320 GO:0015276|GO:0016020
Vvi4g631 1842 Pfam Ligand-gated ion channel 696 726 IPR001320 GO:0015276|GO:0016020
Vvi4g631 1842 Gene3D - 641 701 - -
Vvi4g631 1842 Gene3D - 1585 1646 - -
Vvi4g631 1842 CDD GluR_Plant 344 693 - -
Vvi4g631 1842 Gene3D - 1412 1556 - -
Vvi4g631 1842 Gene3D - 465 603 - -
Vvi4g631 1842 SMART GluR_14 345 695 IPR001320 GO:0015276|GO:0016020
Vvi4g631 1842 SMART GluR_14 1293 1640 IPR001320 GO:0015276|GO:0016020
Vvi4g631 1842 CDD PBP1_GABAb_receptor_plant 875 1261 IPR044440 -
Vvi4g631 1842 MobiDBLite consensus disorder prediction 789 810 - -
Vvi4g631 1842 CDD GluR_Plant 1292 1638 - -
Vvi4g631 1842 SUPERFAMILY Periplasmic binding protein-like II 1270 1640 - -
Vvi4g631 1842 SUPERFAMILY Periplasmic binding protein-like I 9 337 IPR028082 -
Vvi4g631 1842 PANTHER GLUTAMATE RECEPTOR 2.9 1 788 - -
Vvi4g631 1842 PANTHER GLUTAMATE RECEPTOR 2.9 873 1739 - -
Vvi4g631 1842 Pfam Receptor family ligand binding region 2 294 IPR001828 -
Vvi4g631 1842 Pfam Receptor family ligand binding region 893 1241 IPR001828 -
Vvi4g631 1842 SUPERFAMILY Periplasmic binding protein-like I 873 1285 IPR028082 -
Vvi4g631 1842 MobiDBLite consensus disorder prediction 774 810 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g631 K05387 - vvi:100264189 1934.07