Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g632 ATGGGTTTTGAGGCATTTTCAAGGTTTAAGAGAGAGATGATTACTCAGAAGAAGATGAATCTTCAGATAGAGGCGTTGAAGCACCAGATTGTGGTGGATCCGAAATACGCAGAGAAGACTTGGAATATTCTGGAACATGCAATCCATGAGATATGCAATCATAACGACAGCATGAAATTTCGAGGCTATCATCTTGGGACCCACATTGGGAGGAGATTGTCTTGGCAAACGAATATGGGTACGGCTGATTTGAAGGTAATATTTGGCAAGGGCCAGAAGCATGAACTGATTGTTTCTACACATCAGATGTGTGCTCTGATGCTTTTTAATAATGTTGATAACTTAAGTTATAAAGAAATAGAGCAAGCTATAGAGATCCCTGCCTCAGATTTAAAGAGATGTCTGCAGTCTATGGCTTGTGTTAAGGGAAAGAATATTCTCGGGAAGAAGCAGAACAGAGAGAGGGGGCCAAGATTCCTACTCCTTCATCCGTCCCTCTCTAATTATGCACACAAGAAACTGTCTCAAGATATCATTAAGGATCCACACTTATTCACATTCTCATTTAATCAAAGGAGATTCGAGGTTGATGAAACTTACAACTTTAATCAAGATGATCCATTGGTTGAGGGTGTGTTGACACTCGATACACATGCTGAAATTTTTGTTGGGGTTGGTCCGATTACAGATCCCAAAGAAGAGCATAATGCTTTTGAAATCTGTCAGAGGTACAATGAAATCGCTGCACTACTGAAGGACTACATTGCTCTGAATCCAGCCAAGCATTTCACCTTTGTTTCCCATAGTGCTGGAAGATATGTACATAAGAAGTTCAGTCAACAATACAAAGCTACAATTGGTGCCAATTTTGTCACTAAGGAGCTCCAAATTGATGATCAGCTCGTCACTCTTCACATATTGGACATAGCAAGGCAAGAAAGATTTCAGAGTCTCGGTGTTGCATTTTATAGACGAGTAGATTGTTGTGTTCTAGTTTATGATGTTAATGTTAATTCAATTTTATATAAGGGTTGA 1035 39.42 MGFEAFSRFKREMITQKKMNLQIEALKHQIVVDPKYAEKTWNILEHAIHEICNHNDSMKFRGYHLGTHIGRRLSWQTNMGTADLKVIFGKGQKHELIVSTHQMCALMLFNNVDNLSYKEIEQAIEIPASDLKRCLQSMACVKGKNILGKKQNRERGPRFLLLHPSLSNYAHKKLSQDIIKDPHLFTFSFNQRRFEVDETYNFNQDDPLVEGVLTLDTHAEIFVGVGPITDPKEEHNAFEICQRYNEIAALLKDYIALNPAKHFTFVSHSAGRYVHKKFSQQYKATIGANFVTKELQIDDQLVTLHILDIARQERFQSLGVAFYRRVDCCVLVYDVNVNSILYKG* 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7943540 7951247 + Vvi4g632 Vvi4g632 785411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g632 344 Pfam Ras family 272 338 IPR001806 GO:0003924|GO:0005525
Vvi4g632 344 Gene3D - 267 340 IPR027417 -
Vvi4g632 344 Gene3D Cullin; Chain C, Domain 2 34 198 - -
Vvi4g632 344 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 336 IPR027417 -
Vvi4g632 344 PRINTS Transforming protein P21 ras signature 277 293 - -
Vvi4g632 344 PRINTS Transforming protein P21 ras signature 295 317 - -
Vvi4g632 344 SUPERFAMILY Cullin homology domain 59 148 IPR036317 -
Vvi4g632 344 ProSiteProfiles Cullin family profile. 59 139 IPR016158 -
Vvi4g632 344 ProSiteProfiles small GTPase Rab1 family profile. 243 344 - -
Vvi4g632 344 PANTHER BNAA09G29300D PROTEIN 15 57 - -
Vvi4g632 344 PANTHER BNAA09G29300D PROTEIN 59 150 - -
Vvi4g632 344 SMART rab_sub_5 271 344 - -
Vvi4g632 344 Pfam Cullin family 18 153 IPR001373 GO:0006511|GO:0031625
Vvi4g632 344 PANTHER CULLIN 59 150 IPR045093 -
Vvi4g632 344 PANTHER CULLIN 15 57 IPR045093 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g632 K03869 CUL3; cullin 3 - vvi:100254227 169.088
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g632 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024351 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2