Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g633 ATGAGAAAGAACCTTACCCAACTTGTTTTATCTCTCTTCTGCTGTCTCTCTCTCTGGATTTTCTTCACAGAGACGGCCATGTCACAGAACACAACCATTCCAGTTAAAGTGGGAGTGGTTCTCAATATGGATACATGGTTAGGGAAGATGGGATTGAGCTGCATCTCCATGGCACTGTCAGACTTCTATGCCTCTCATGGGCACTACAAGACTAGGCTGGTTCCGGAAATTAGAGACTCCAAAAGAGATGTCGTTGGTGCAGCTGCGGCCGCTCTAGACTTGTTGCAAAATGAGGAAGTTCAAGCCATCATAGGACCGGCATCTTCCATGCAGGCCAACTTCGTGATTGGTCTCGGAGACAAAGCTCATGTGCCCATCATTTCATTTTCTGCAACAAGCCCTTCTCTTTCTTCACTTCAGAGTCAATATTTTATCCGAGCCACCCTAAATGACTCAGCTCAAGTACCAGCAATAAGGGCAATTGTCCAAGCCTTTGGATGGAGAGAAGTTGTGCTTATTTACGTGGACAACGAGTATGGTAATGGCGTTATACCATATCTTACCGATGCCTTGCAAGAGATTGACACCCGTATCACCTACAGGTGCGTCATTCCTCCATTTGCCACTGATGATCAAATAGTCAAAGAACTTTACAAGCTGATGACAATGTCAACCAGAGTTTTCATTGTACACATGTTCACACCTCTTGGTCCTCTGCTTTTCACCAAAGCAAATGAGGTCGGAATGATGGATGAAGGCTATGTTTGGATACTGACTGATGGGATGACTGATATCTTGAGTACTTTGGATGAGTCAGTCATTGACTCGATGCAAGGGGTGTTGGGTGTAAAGCCTCATGTTCCCAGATCTAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGACAATCCAAAATCAATATCCAACCAATGAAAGCTTTGAGCTGAACATATTTGGCCTCTGGGCTTATGATGCAGCTTCTGGGCTAGCCATGGCAGTTGAACAACTTGGGGCAACAAACTTCAGCTTCCAAAATTCTAATATTTCCAGGAATTCAACCGATCTTGGGACTATACAAGTCTCCCAAACGGGTCCATATCTTCTCCAATCGCTTGTAAGTACTAGATTCAGAGGCCTCAGTGGAGATTTTCAAATTGTTGATGGGCAACTACATTCATCAGCCTTTCAGATAGTCAATGTGATTGGTAAGGGGGAAAGAGGGGTAGCACTTTGGACACCGGAGAATGGAATTGTAAGAAATTCAAATTCTACTAATAAGGCTGATCTAAGAACCATCATATGGCCAGGAGAATCTCCTTCAGTTCCTAAAGGTTGGGTGCTTCCCACAAACGGCAAGAAGTCCTTGAGAATAGGAGTACCAGTGAAGGAGGGTTTTAGTGAATTTGTAAAGGTGACAAGAGATCCTATCACTAACGCTACGAAGGTCACTGGATACTGCATAGCTATCTTCGATGCTGTGATGGCGGCATTGCCATATGCTGTTCCTTACGAGTACATTCCCTTCGAGACCCCTGATGGGAAGCCCACTGGCAATTACGATGATTTGATATATCAAGTATATCTTCAGAAGTATGATGCTGTTGTGGGAGATACTACTATCGTAGCGAACAGGTCCTTATATGTAGACTTTACGCTGCCTTATACAGAATCTGGGGTGTCAATGATTGTGCCCATTATAGATAAAAGAAGTAAAAATGCATGGGTTTTCTTGAAGCCTCTGACTTGGGACCTTTGGGTGACAAGCGCTTGTTTCTTTGTCTTCATTGGTTTTGTGATTTGGGTTCTGGAACATCGTATAAATGAAGATTTCAGAGGGCCTCGTTCAAATCAAGTTGGCACGATCCTCTGGTTTTCATTCTCGACAATGGTGTTTGCCCAGAAGGAGAGAATTGTGAGTAACTTGGCTCGGTTCGTGGTGATCATATGGTTTTTTGTGGTGCTGATTCTCACTCAAAGTTACACAGCCAGCTTGACTTCAATGTTAACAGTTCAACAGCTCAAGCCGACTATCACAGACATAAATGAGCTCATAAAGAATGGGGAGCGTGTGGGTTACCAAAAGGGCTCTTTTGTTTATGAATTCTTGAAGTGGATGAAATTTGACGAAACCAAGCTTGTAATCTATGAGTCTCCAGAAGAACTGGATGAATTATTTTCAAACAGGAGTTCAGATGGTGGAATTGCCGCTGCTTTTGAGGAAATCCCTTACGTGAAGCTTTTCCTTGCAAAATATTGCTCCAAATACACTGCAGTTCAACCAACTTACAAGTTCGATGGGTTTGGATTTGTCTTCCCAAAGCGATCACCTCTTGTACCTGATGTTTCAATGCAAGTCTTAAACGTGACTGAGGGAGCTAAAATGGTTCAATTTGAAAGAGCATGGTTTGGGCAAACACCCAGTTGTACAGACCTCACCAGCTCAGTTTCTTCAAACAGCATTGGTCTTAATAGCTTTTGGGGCCTATTCCTCATTGCTGGAGTCGCTTCATTTGTAGCTTTCATCCTCTGCATCGCCACCTTCCTTTACGAAAATAGAGATGCCCTGATGAATCTGGATCCCCCAGCTTCAGCATGGAGAAAAATTAAAGCCATGGCAACACGCTTTGACCAGAAAGATCCCAGCTCGCATACTTTCAGAAAAAGTGAAATGGTAGACAGAAAGGCCAAGAAACACCTTCTTCTGAATATGGTGATCCATTCAGTCCAAATAGGCAGACATCTCCACAGTAGTATTTGA 2760 43.3 MRKNLTQLVLSLFCCLSLWIFFTETAMSQNTTIPVKVGVVLNMDTWLGKMGLSCISMALSDFYASHGHYKTRLVPEIRDSKRDVVGAAAAALDLLQNEEVQAIIGPASSMQANFVIGLGDKAHVPIISFSATSPSLSSLQSQYFIRATLNDSAQVPAIRAIVQAFGWREVVLIYVDNEYGNGVIPYLTDALQEIDTRITYRCVIPPFATDDQIVKELYKLMTMSTRVFIVHMFTPLGPLLFTKANEVGMMDEGYVWILTDGMTDILSTLDESVIDSMQGVLGVKPHVPRSKELESFKIRWKRTIQNQYPTNESFELNIFGLWAYDAASGLAMAVEQLGATNFSFQNSNISRNSTDLGTIQVSQTGPYLLQSLVSTRFRGLSGDFQIVDGQLHSSAFQIVNVIGKGERGVALWTPENGIVRNSNSTNKADLRTIIWPGESPSVPKGWVLPTNGKKSLRIGVPVKEGFSEFVKVTRDPITNATKVTGYCIAIFDAVMAALPYAVPYEYIPFETPDGKPTGNYDDLIYQVYLQKYDAVVGDTTIVANRSLYVDFTLPYTESGVSMIVPIIDKRSKNAWVFLKPLTWDLWVTSACFFVFIGFVIWVLEHRINEDFRGPRSNQVGTILWFSFSTMVFAQKERIVSNLARFVVIIWFFVVLILTQSYTASLTSMLTVQQLKPTITDINELIKNGERVGYQKGSFVYEFLKWMKFDETKLVIYESPEELDELFSNRSSDGGIAAAFEEIPYVKLFLAKYCSKYTAVQPTYKFDGFGFVFPKRSPLVPDVSMQVLNVTEGAKMVQFERAWFGQTPSCTDLTSSVSSNSIGLNSFWGLFLIAGVASFVAFILCIATFLYENRDALMNLDPPASAWRKIKAMATRFDQKDPSSHTFRKSEMVDRKAKKHLLLNMVIHSVQIGRHLHSSI* 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8025657 8030106 + Vvi4g633 Vvi4g633 785412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g633 919 SMART GluR_14 455 805 IPR001320 GO:0015276|GO:0016020
Vvi4g633 919 CDD GluR_Plant 454 803 - -
Vvi4g633 919 CDD PBP1_GABAb_receptor_plant 36 421 IPR044440 -
Vvi4g633 919 PIRSF IGluLR_plant 3 902 IPR017103 -
Vvi4g633 919 Pfam Bacterial extracellular solute-binding proteins, family 3 480 805 IPR001638 -
Vvi4g633 919 SUPERFAMILY Periplasmic binding protein-like I 34 446 IPR028082 -
Vvi4g633 919 Gene3D - 462 573 - -
Vvi4g633 919 Pfam Receptor family ligand binding region 54 402 IPR001828 -
Vvi4g633 919 Gene3D - 349 458 - -
Vvi4g633 919 SUPERFAMILY Periplasmic binding protein-like II 432 805 - -
Vvi4g633 919 Gene3D - 574 712 - -
Vvi4g633 919 Gene3D - 152 317 - -
Vvi4g633 919 Pfam Ligand-gated ion channel 806 836 IPR001320 GO:0015276|GO:0016020
Vvi4g633 919 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 896 - -
Vvi4g633 919 PANTHER GLUTAMATE RECEPTOR 2.9 34 896 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g633 K05387 - vvi:100250263 1709.12