Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g634 ATGGCCCTCTCAGACTTCTATGCCTCTCATGGGCACTACAAGACTAGGCTGGTTCTGGAAATCAGAGATTCCAATAGAGATGTTGTGGGTGCAGCTGCAGCAGTTACCAAATGTGACGCGTATATAAAAAAATTAAGGTTATCTCCAACAAAATCTCTAACATTGATAATTTTTTCACCAATTCTAGAATTCATGGGACCAAGGCGATCTCTAGATTTATTACAAAATGAGGAAGTTCAAGCCATCATAGGACCAGCATCCTCCATGCAGGCCGACTTTGTGATTGGTCTCGGAGACAAGGCTCATGTGCCCATCATGTCATTTTCTGCAACTAGTCCTTCTCTTTCTTCGCTCCGGAGTCGATATTTTGTCCGAGCCACACTGAATGACTCAGCTCAAGTACCAGCTATAAGGGCAATTGTCCAAGCCTTTGGGTGGAGAGAAGTGGTGCTCATTTACTTGGACAACGAGTACGGAAATGGAGTTATACCATATCTTACTGATGCCTTGCAAGAGATTGACACCCGTATCGCCTACAGGAGCGTCATTCATCCATTAGCCACTGATGATCAAATCCTCGAAGAGCTTTACAAGTTGATGACAATGCCAACCAGAGTTTTCATTGTACACATGCTTACACCTCTAGGCCCTCGGCTTTTCACCAGAGCGAATGAGATTGGAATGATGGAAGAAGGTTATGTTTGGATTCTAACTGATGGGTTAACTAATATTTTGAGTACTTTGGATCCATCTGTCATTGATTCAATGCAAGGAGTGTTGGGGGTGAAGCCTCATGTTCCAAGATCGAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGAAAATCCAACAAGAATATCCAACCAATGAAAGCTTTGAGCTGAACATTTTTGGACTCTGGGCTTATGATGCTGCTTCTGGGCTAGCCATGGCAGTTGAAAAACTTGGGCCAACAAACTTCAGCTTCCAAAAGTCTAATACTTCCAGAACTTCAACCGATCCTGATACTGGCCTCAGTGGACACTTTCAAATTTTTAACAGGCAACTATGCTCATCAGCTTTTCAGGTAGTCAATGTGATCGGCAAAGGGGAAAGAGGGGTTGGATTTTGGACACCAGAGAATGGAACTGTAAGAAATAACGCAACAGAGGTCACTGGATTTTCCATAGGAGTCTTCGATGCAGTGATGGCAGCATTACCATATGCTGTTCCGTATGAGTACATTCCCTTCAAGGCCCCTGATAGCAATGCAGCCTGTGATTACAACGATTTGATATATCAAGTATATCTCCAGAAGTATGATGCTGTGGTGGGAGATACTACTATTCTAGCGAACAGGTCCTTGTATGTAGACTTTACACTACCTTACACAGAATCTGGGGTGTCAATGGTTGTGCCCACTATAGATAAAAGAAAAAAAAATGCATGGGTTTTCTTGAAGCCACTTACTTGGGACCTTTGGGTGACAAGCTCTTGTTTCTTCGTATTCATTGGCTTTGTCATTTGGGTTCTTGAACATCGAGTAAATAAAGATTTCAGAGGGCCCTGTTCACATCAAGTTGGCACTATCTTCTGGTTTTCATTCTCAACATTGGTGTTTGCTCAGAAGGAGAGAATTGTCAGCAACTTGGCTCGGATTGTGATGATCATGTGGTTTTTTGTGGTGCTGATTCTCACTCAAAGTTACACAGCCAGCTTGACTTCAATGTTAACAGTTCAACAACTCAACCCAACTATTACCGATATAAATGAGCTCATAAAGAAGGGGGAGCGTGTAGGTTGCCAATATGGCTCTTTCATTTATGAATTCTTGATCACGTCGATGAAATTTGATGAGTCCAAGCTTGTAAACTATGAGTCACCAGAAGGACTGGATGAATTATTTTCAAAAGGTGGAATTGCTGCTGCATTTGATGAAATCCCTTACATGAAGATTTTCCTTGCAAAATATTGCTCCAAATACACTGCAGTCGGACCAATATACAAGTTTGATGGGTTTGGATTTGTCTTTCCAAAGGGTTCACCCCTTGTAGCGGATGTTTCAAGGAAAGTTTTAAGCGTGACAGAGGGAGCTAAAATGTTACAATTTGAGAAGGCTTGGTTTGGGAAAAGACCCAATTGTACAGAGCTCACCAGCTCAGTTTCTTCAAACAGCATCGGCCTTAATAGCTTTTGGGGCCTATTCCTCATTGCTGGAGTCGCTTCTTCTGTAGCTCTCATCACATGCATCACCATATTCCTTTATCAAAATAGAGAAGCCTTAATAAACTTGAATCCCCCTTCTTCCATATGGAGAAAAATTAAAGCCATGGTGACACGCTTTGATGACAAAGATCTCATGTCCCATACCTTTAGAAAAAGTGATCAACTTCCAGACAAGCGGCATCAAGGCCATGGATGCAGTTACAGCCTCGCCAGCTACACCAACTGCCCACCAAGTCCATCAAGCCTTTTGATCCCAACACACAGCAATTTTGCTTTCTTCAGTGAACAAGGAATGCCTTCTTCTGGACATGGTGATCCAATCAGTCCAAATCGACTAATGTCTCCACATATATTATTTGAAGATGAACTTTCTAATATAAATCACGAGCAAATTAACAAGATGTCATGCCCCAAGACCCTCTCCAAGGACGTGATGGTCAATTCACACATCAAGCCCAAAAGCTCAAAGTGTAAATTGAATATTGTTGAGAATAATTCTAGAAGCTTATCTTAG 2721 41.9 MALSDFYASHGHYKTRLVLEIRDSNRDVVGAAAAVTKCDAYIKKLRLSPTKSLTLIIFSPILEFMGPRRSLDLLQNEEVQAIIGPASSMQADFVIGLGDKAHVPIMSFSATSPSLSSLRSRYFVRATLNDSAQVPAIRAIVQAFGWREVVLIYLDNEYGNGVIPYLTDALQEIDTRIAYRSVIHPLATDDQILEELYKLMTMPTRVFIVHMLTPLGPRLFTRANEIGMMEEGYVWILTDGLTNILSTLDPSVIDSMQGVLGVKPHVPRSKELESFKIRWKRKIQQEYPTNESFELNIFGLWAYDAASGLAMAVEKLGPTNFSFQKSNTSRTSTDPDTGLSGHFQIFNRQLCSSAFQVVNVIGKGERGVGFWTPENGTVRNNATEVTGFSIGVFDAVMAALPYAVPYEYIPFKAPDSNAACDYNDLIYQVYLQKYDAVVGDTTILANRSLYVDFTLPYTESGVSMVVPTIDKRKKNAWVFLKPLTWDLWVTSSCFFVFIGFVIWVLEHRVNKDFRGPCSHQVGTIFWFSFSTLVFAQKERIVSNLARIVMIMWFFVVLILTQSYTASLTSMLTVQQLNPTITDINELIKKGERVGCQYGSFIYEFLITSMKFDESKLVNYESPEGLDELFSKGGIAAAFDEIPYMKIFLAKYCSKYTAVGPIYKFDGFGFVFPKGSPLVADVSRKVLSVTEGAKMLQFEKAWFGKRPNCTELTSSVSSNSIGLNSFWGLFLIAGVASSVALITCITIFLYQNREALINLNPPSSIWRKIKAMVTRFDDKDLMSHTFRKSDQLPDKRHQGHGCSYSLASYTNCPPSPSSLLIPTHSNFAFFSEQGMPSSGHGDPISPNRLMSPHILFEDELSNINHEQINKMSCPKTLSKDVMVNSHIKPKSSKCKLNIVENNSRSLS* 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8105891 8110129 + Vvi4g634 Vvi4g634 785413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g634 906 Pfam Bacterial extracellular solute-binding proteins, family 3 379 704 IPR001638 -
Vvi4g634 906 Pfam Receptor family ligand binding region 1 325 IPR001828 -
Vvi4g634 906 Gene3D - 649 710 - -
Vvi4g634 906 SUPERFAMILY Periplasmic binding protein-like II 379 704 - -
Vvi4g634 906 Pfam Ligand-gated ion channel 705 735 IPR001320 GO:0015276|GO:0016020
Vvi4g634 906 SMART GluR_14 365 704 IPR001320 GO:0015276|GO:0016020
Vvi4g634 906 Gene3D - 368 475 - -
Vvi4g634 906 PANTHER GLUTAMATE RECEPTOR 2.9 1 380 - -
Vvi4g634 906 PANTHER GLUTAMATE RECEPTOR 2.9 379 804 - -
Vvi4g634 906 Gene3D - 476 619 - -
Vvi4g634 906 PIRSF IGluLR_plant 66 383 IPR017103 -
Vvi4g634 906 PIRSF IGluLR_plant 1 39 IPR017103 -
Vvi4g634 906 PIRSF IGluLR_plant 377 802 IPR017103 -
Vvi4g634 906 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 379 804 - -
Vvi4g634 906 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 380 - -
Vvi4g634 906 CDD GluR_Plant 370 702 - -
Vvi4g634 906 CDD PBP1_GABAb_receptor_plant 1 376 IPR044440 -
Vvi4g634 906 Gene3D - 131 296 - -
Vvi4g634 906 SUPERFAMILY Periplasmic binding protein-like I 1 376 IPR028082 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g634 K05387 GRIP; glutamate receptor, ionotropic, plant - vvi:100264189 1487.24
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g634 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda01g01357 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01271 . Chy03g01062 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202