Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g635 | ATGGTCATGTCACGGAATACAACAATACCAGTTAAAGTGGGAGTGGTTCTTGACATGGATACATGGCTGGGGAAGATGGGCTTGAGCTGCATCTCCATGGCGCTCTCAGACTTCTATGCCTCTCATGGGCACTACAAGACTAGGCTGGTTCTGGAAATCAGAGATTCCAATAGAGATGTTGTGGGTGCAGCTGCAGCAGACGCAAAGAGTCTCCATAAATTTAATTTCCTTCTTGGTTTAATAGTCAACAGTAATTTTGTGACAATTTTAGAGAAGCGTGGGAAGTTAGCAAAAATGACGCCTATGACATATGCTCTAGATTTATTACAAAATGAGGAAGTTCAAGCCATCATAGGACCAGCATCCTCCATGCAGGCCAACTTTGTGATTGGTCTCGGAGACAAGGCTCATGTGCCCATCATTTCATTTTCTGCAACTAGTCCTTCTCTTTCTTCGCTCCGGAGTCGATATTTTGTCCGAGCCACACTGAATGACTCAGCTCAAGTACCAGCTATAAGGGCAATCGTCCAAGCCTTTGGGTGGAGACAAGTTGTGCTCATTTACTCGGACAACGAGTACGGAAATGGAGTTATACCATATCTTACTGATGCCTTGCAAGAGATTGACACCCGTATCTCCTACAGGAGCGTCATTCATCCATTAGCCACCGATGATCAAATCCTTGAAGAGCTTTACAAGTTGATGACAATGCCAATCAGAGTTTTCATTGTACACATGTTTACACCTCTAGGCCCACGGCTTTTCACCAGAGCGTATGAGATTGGAATGATGGAAGAAGGTTTTGTTTGGATACTAACTGATGGACTAACTGATATCTTGAGTGCTTTGGATGACTCGGTCATTGATTCGATGCAAGGAGTGTTGGGTGTAAAGCCTCATGTTCCAAGATCGAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGAAAATCCAACAAGAATATCCAACCAATGAAAGCTTTGAGCTGAACATTTTTGGACTCTGGGCTTATGATGCTGCTTCTGGGCTAGCCATGGCAGTTGAAAAACTTGGAGCAACAAACTTCAGCTTCCAAAAGTCTAATACTTCCAGAAATTCAACTGATCTTGATACTGTAGGAGTCTCCCAAATTGGTCCAAATCTTCTCCAATCACTATTAAGTACTAGATTTAAGGGCCTTAGTGGACACTTTCAAATTTTTAACAGGCAACTACGCTCATCAGCTTTTCAGGTAGTCAATGTGATCGGCAAAGGGGAAAGAGGGGTTGGATTTTGGACACCAGAGAATGGAACTGTAAGAAAGTTACATTCGACTTCCAAGACCAATCTAGGAACAATCGTATGGCCAGGAGAATCACCCTCTGTTCCTAAAGGTTGGGTCCTTCCAACCAATGAGAAGAAGATGAGAATAGGAGTACCAGTCACCAAGGGTTCTGGTAAATTCGTAAAGGTGACACGAGATCCTAGCACTAACGCGACGGAGGTCACTGGATTTTCCATTGCAGTCTTCGATGCAGTGATGGCAGCATTACCATATGCTGTTCCTTATGAGTACATTCCCTTCCAGACGCCTGATGGTGAACCAGCGGGTGATTACAACGATTTGATATATCAAGTATATCTCAAGAAGTATGATGCTGTGGTGGGAGATACTACTATTCTAGCGAACAGGTCCTTGTATGTAGACTTCACACTACCGTACACAGAATCTGGGGTGTCAATGATCGTGCCCATCATAGATAAAAGAAGAAAAAATGCATGGGTTTTCTTGAAGCCACTTACTTGGGACCTTTGGGTGACAAGCTCTTGTTTCTTTGTATTCATTGGCTTTGTGATTTGGGTTCTTGAACATCGAGTAAATAAAGATTTCAGAGGGCCTCGTTCACATCAAGTTGGCACTATCTTCTGGTTTTCATTCTCAACATTGGTGTTTGCTCAGAAGGAGAGAATTGTCAACAACTTGGCTCGGTTTGTGGTGATCATATGGCTTTTTGTGGTGCTGATTCTTACTCAAAGTTACACAGCCAGCTTGACTTCAATGTTGACAGTTCAACAGCTCAACCCAACCATCACCGATATAAATGAGCTCATAAAGAAGGGGGAGCGTGTAGGTTGCCAACATGCCTCTTTCGTTCATGAATTCTTGATCGAATCGATGAAATTTGATGAGTCCAACCTTGTAATCTATGAGTCAACAGAAGTACTGGATGAATTATTTTCAAAAGGTAGAATTGCTGCCGCATTTGATGAAATCCCTTACATTAAGCTTTTCCTTGCAAAATATTGCTCCAAATACACTGCAGTTGGACCAACATACAAGTTTGATGGGTTTGGATTTGTGTTTCCAAAGGGTTCACCCCTTGTAGCTGATGTTTCAAGGCAAGTCTTAAACGTGACTGAGGGAGCTAAAATGCTACAATTTGAGAAGGCATGGTTTGGGCAAACACCCAGTTGTCCAGAGCTCACCAGCTCAGTTTCTTCAGACAGCATCGGCCTTAATAGCTTTTGGGGCCTATTCCTCATTGCTGGAATCGCTTCATTTGTAGCTCTCATCACATGCATCACCACATTCCTTTATGAAAATAGAGATGCATTAATAAACTTGAATTCCCCATCTTCCATATGGAGAAAAATTAAAGCCATGGTGACACGCTTTGATGACAAAGATCTTAGGTCCCATACTTTTAGAAAAAGTGATCAACTTCAAGACAAGCGGCATCAAAGCCATGGATGCAGCTACACCAACTTCCCTCCAAGTCCATCGAGCCTTTTGCTCCCAACACACAACAATTTTTCTTTCTTCAGAGAACAAGGAACACCTTCTTCTGGACATGCTGATCCAGTCGGTCCAAATCGGCCCATGTCTCCACATATATTGTTTGGATATGAGCTTGCTAATATAAATCACGAGCAAACAAGACCGCTTCCATTACATGGCCAAGAGAATCTACTTTTGCTTCCTAAAGGTTGGGTGTCTCCTACCAACGGAAAGAAGATGAAGATAGGAGTTCCAATGAAAGAGGGTTTTAATGAATTTGTGAAGGTGACGCAAGATCCTATCCCTAATACAACAAAGGTCATTGGTTACTTCATCGCTTTCTTTGATGTTGTAATGGCAACATTTGCCATATGTAGGAAACTGCCATCCTTTTGCAATGAAATATCTCACCAATTTTACCTCTACTTTTATGATGAACAAATGTATGACAATGTGGTGGGAGATACTACTATTCTAGCGAACAGGTCTTTGTATGTAGACTTTACACTACCTTACACCAAGTTTGGCATATCAACGATCATGCCCATCATTGATAATAGAAGTAAAAATGCATGGTTTGATAATTTTCCTGGTTTTGTGGATAACACTAAGGGCTGCAAACAACTTACAGGGTTCCTCTTTGACAGTATGATAGAATATTTAGACACGAAATACTACATGCGCTCTGATTCAGGATGCAAGACATGGACTAGACTGCTATGGTGGATGAATGGGAAGAAGTTGATCAAGTTAGTTGTTGAGGAGGTTAGGAGATGGGCAGATTTAGCTGGAAGGGTTTCTAATGAAGTAATAGAGTGGGAGATGAGTCACTCTTTGCGAAAATGGACTGATTTTGAGATCAAGGAGTTATGCAAATCATTGCAGAAAACCATGAGCCGAAGCTCAATGCCTACAAATATGAGTCTGGATGAAGCTGTAAAACTGGTGAAGCAAGGGGTGCTTAAGCCTCAGGATTTCATATTCTTTGTTGGATATGTTGGGTGGCAGTCGGATCAGTTGGAGAGAAGAGATTGGATCAGACTATTAGTATGTGGCTACATACAGCCCAAACGTGATCAGTGTGGTCTCAACAGGATCTTCCTCTGGTCTATGAGAGGAGATTTCATCGTCAAAGGGGTAATGAGAAAGAACCTTAGCCAACTCCTTACCTCTCTCTTGTTCGTTCTCTTTCCCACGATTTTCTTCATTGAAATGAGCATGGCACAGAACACAACAATACCGGTTAAAGTGGGAGTGGTTCTTGACATGGACACATGGCTGGGGAAGATGGGTTTGAGCTGCATCTCCATGGCGCTCTCAGACTTCTATGCCTCTCATGGGCACTACAAGACTAGGCTGGTTCTGGAAATCAGAGATTCCAAAAGGGATGTTATGGGTGCAGCTGCAGCAGCTCTAGATTTATTACAAAATGAGGAAGTTCAAGCCATCATAGGACCAGCATCCTCCATGCAGGCCAACTTTGTGATTGGTCTCGGAGACAAGGCTCATGTGCCCATCATTTCATTTTCCGCAACTAGTCCTTCCCTTTCTTCGCTGCGGAGTCGATATTTTGTCCGAGCCACACTGAATGACTCAGCTCAAGTACCAGCTATGAGGGCAATTGTCCAAGCCTTTGGGTGGAGAGAAGTTGTGCTCATTTACGTGGACAACGAGTATGGAAATGGAGTGATACCATATCTTACTGATGCCTTGCAAGAGATTGACACCCGTATCTCCTACCGGAGCGTCATTCATCCATTAGCCACTGATGATCAAATCCTCGAAGAGCTTTACAAGTTGATGACGAAGCCAACCAGAGTTTTCATTGTACACATGCTTACACCTCTAGGCCCACGGCTTTTCACCAGAGCGAATGAGATTGGAATGATGAAAGAAGGTTATGTTTGGATTCTAACTGATGGGTTAACTGATATCTTGAGTACTTTGGATCCATCTGTCATTGATTCAATGCAAGGAGTGCTGGGCGTGAAGCCTCATGTTCCAAGATCGAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGAAAATTCAACAAGAATATCCAACCAATGAAAGCTTTGAGCTGAACATTTTTGGACTCTGGGCTTATGATGCTGCTTCTGGGCTAGCCATGGCAGTTGAAAAACTTGGGCCAACAAACTTCAGCTTCCAAAATCTTCTCCAATCACTATTAAGTACTAGATTTAAGGGCCTCAGTGGACACTTTCAAATTTTGAACAGGCAACTACGTTCATCAGCTTTTCAGGTGGTCAATGTGATCGGCAAAGGGGAAAGAGGGGTTGGATTTTGGACACCAGAGAATGGAACTGTAAGAAAGTTACATTCTACTTCCAAGGCCAATCTAGGAACAATCGTATGGCCAGGAGAATCTCCCTCCGTTCCTAAAGGTTGGGTCCTTCCCACCAATAAGAAGAAGATGAGAATAGGAGTACCAGTCACCAAGGGTTTTGGTGAATTCGTAAAGGTGACACGAGATCCTAGCACTAACGCAACGGAGGTCACTGGATTTTCCATAGCAGTCTTCGATGCAGTGATGGCAGCATTACCATATGCTGTTCCTTATGAGTACAGTCCCTTCCAGACGCCCGATGGCGATCCAGCGGGTGATTACAACGATTTGATATATCAAGTATATCTCCAGAAGTATGATGCTGTGGTGGGAGATACTACTATTCTAGCGAACAGGTCCTTGTATGTAGACTTTACACTACCGTACACATAA | 5505 | 42.89 | MVMSRNTTIPVKVGVVLDMDTWLGKMGLSCISMALSDFYASHGHYKTRLVLEIRDSNRDVVGAAAADAKSLHKFNFLLGLIVNSNFVTILEKRGKLAKMTPMTYALDLLQNEEVQAIIGPASSMQANFVIGLGDKAHVPIISFSATSPSLSSLRSRYFVRATLNDSAQVPAIRAIVQAFGWRQVVLIYSDNEYGNGVIPYLTDALQEIDTRISYRSVIHPLATDDQILEELYKLMTMPIRVFIVHMFTPLGPRLFTRAYEIGMMEEGFVWILTDGLTDILSALDDSVIDSMQGVLGVKPHVPRSKELESFKIRWKRKIQQEYPTNESFELNIFGLWAYDAASGLAMAVEKLGATNFSFQKSNTSRNSTDLDTVGVSQIGPNLLQSLLSTRFKGLSGHFQIFNRQLRSSAFQVVNVIGKGERGVGFWTPENGTVRKLHSTSKTNLGTIVWPGESPSVPKGWVLPTNEKKMRIGVPVTKGSGKFVKVTRDPSTNATEVTGFSIAVFDAVMAALPYAVPYEYIPFQTPDGEPAGDYNDLIYQVYLKKYDAVVGDTTILANRSLYVDFTLPYTESGVSMIVPIIDKRRKNAWVFLKPLTWDLWVTSSCFFVFIGFVIWVLEHRVNKDFRGPRSHQVGTIFWFSFSTLVFAQKERIVNNLARFVVIIWLFVVLILTQSYTASLTSMLTVQQLNPTITDINELIKKGERVGCQHASFVHEFLIESMKFDESNLVIYESTEVLDELFSKGRIAAAFDEIPYIKLFLAKYCSKYTAVGPTYKFDGFGFVFPKGSPLVADVSRQVLNVTEGAKMLQFEKAWFGQTPSCPELTSSVSSDSIGLNSFWGLFLIAGIASFVALITCITTFLYENRDALINLNSPSSIWRKIKAMVTRFDDKDLRSHTFRKSDQLQDKRHQSHGCSYTNFPPSPSSLLLPTHNNFSFFREQGTPSSGHADPVGPNRPMSPHILFGYELANINHEQTRPLPLHGQENLLLLPKGWVSPTNGKKMKIGVPMKEGFNEFVKVTQDPIPNTTKVIGYFIAFFDVVMATFAICRKLPSFCNEISHQFYLYFYDEQMYDNVVGDTTILANRSLYVDFTLPYTKFGISTIMPIIDNRSKNAWFDNFPGFVDNTKGCKQLTGFLFDSMIEYLDTKYYMRSDSGCKTWTRLLWWMNGKKLIKLVVEEVRRWADLAGRVSNEVIEWEMSHSLRKWTDFEIKELCKSLQKTMSRSSMPTNMSLDEAVKLVKQGVLKPQDFIFFVGYVGWQSDQLERRDWIRLLVCGYIQPKRDQCGLNRIFLWSMRGDFIVKGVMRKNLSQLLTSLLFVLFPTIFFIEMSMAQNTTIPVKVGVVLDMDTWLGKMGLSCISMALSDFYASHGHYKTRLVLEIRDSKRDVMGAAAAALDLLQNEEVQAIIGPASSMQANFVIGLGDKAHVPIISFSATSPSLSSLRSRYFVRATLNDSAQVPAMRAIVQAFGWREVVLIYVDNEYGNGVIPYLTDALQEIDTRISYRSVIHPLATDDQILEELYKLMTKPTRVFIVHMLTPLGPRLFTRANEIGMMKEGYVWILTDGLTDILSTLDPSVIDSMQGVLGVKPHVPRSKELESFKIRWKRKIQQEYPTNESFELNIFGLWAYDAASGLAMAVEKLGPTNFSFQNLLQSLLSTRFKGLSGHFQILNRQLRSSAFQVVNVIGKGERGVGFWTPENGTVRKLHSTSKANLGTIVWPGESPSVPKGWVLPTNKKKMRIGVPVTKGFGEFVKVTRDPSTNATEVTGFSIAVFDAVMAALPYAVPYEYSPFQTPDGDPAGDYNDLIYQVYLQKYDAVVGDTTILANRSLYVDFTLPYT* | 1835 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 8149429 | 8183352 | + | Vvi4g635 | Vvi4g635 | 785414 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g635 | 1834 | Pfam | Domain of unknown function (DUF4378) | 1131 | 1207 | IPR025486 | - | |
Vvi4g635 | 1834 | Gene3D | - | 1617 | 1732 | - | - | |
Vvi4g635 | 1834 | Gene3D | - | 339 | 472 | - | - | |
Vvi4g635 | 1834 | SUPERFAMILY | Periplasmic binding protein-like II | 444 | 815 | - | - | |
Vvi4g635 | 1834 | SUPERFAMILY | Periplasmic binding protein-like I | 1334 | 1725 | IPR028082 | - | |
Vvi4g635 | 1834 | SUPERFAMILY | Periplasmic binding protein-like II | 1709 | 1834 | - | - | |
Vvi4g635 | 1834 | Gene3D | - | 1452 | 1616 | - | - | |
Vvi4g635 | 1834 | Gene3D | - | 166 | 331 | - | - | |
Vvi4g635 | 1834 | CDD | PBP1_GABAb_receptor_plant | 1336 | 1701 | IPR044440 | - | |
Vvi4g635 | 1834 | Pfam | Ligand-gated ion channel | 816 | 846 | IPR001320 | GO:0015276|GO:0016020 | |
Vvi4g635 | 1834 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 493 | 815 | IPR001638 | - | |
Vvi4g635 | 1834 | CDD | GluR_Plant | 467 | 813 | - | - | |
Vvi4g635 | 1834 | Gene3D | - | 993 | 1116 | - | - | |
Vvi4g635 | 1834 | Gene3D | - | 1733 | 1834 | - | - | |
Vvi4g635 | 1834 | Gene3D | - | 587 | 730 | - | - | |
Vvi4g635 | 1834 | Gene3D | - | 758 | 821 | - | - | |
Vvi4g635 | 1834 | CDD | PBP1_GABAb_receptor_plant | 12 | 436 | IPR044440 | - | |
Vvi4g635 | 1834 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 1334 | 1834 | - | - | |
Vvi4g635 | 1834 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 10 | 918 | - | - | |
Vvi4g635 | 1834 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 985 | 1113 | - | - | |
Vvi4g635 | 1834 | Pfam | Receptor family ligand binding region | 1354 | 1681 | IPR001828 | - | |
Vvi4g635 | 1834 | Pfam | Receptor family ligand binding region | 30 | 416 | IPR001828 | - | |
Vvi4g635 | 1834 | Gene3D | - | 475 | 586 | - | - | |
Vvi4g635 | 1834 | SMART | GluR_14 | 470 | 815 | IPR001320 | GO:0015276|GO:0016020 | |
Vvi4g635 | 1834 | PANTHER | GLUTAMATE RECEPTOR 2.9 | 1334 | 1834 | - | - | |
Vvi4g635 | 1834 | PANTHER | GLUTAMATE RECEPTOR 2.9 | 10 | 918 | - | - | |
Vvi4g635 | 1834 | PANTHER | GLUTAMATE RECEPTOR 2.9 | 985 | 1113 | - | - | |
Vvi4g635 | 1834 | SUPERFAMILY | Periplasmic binding protein-like I | 10 | 460 | IPR028082 | - | |
Vvi4g635 | 1834 | SUPERFAMILY | Periplasmic binding protein-like II | 986 | 1118 | - | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g635 | K05387 | - | vvi:100241793 | 1802.33 |