Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g635 ATGGTCATGTCACGGAATACAACAATACCAGTTAAAGTGGGAGTGGTTCTTGACATGGATACATGGCTGGGGAAGATGGGCTTGAGCTGCATCTCCATGGCGCTCTCAGACTTCTATGCCTCTCATGGGCACTACAAGACTAGGCTGGTTCTGGAAATCAGAGATTCCAATAGAGATGTTGTGGGTGCAGCTGCAGCAGACGCAAAGAGTCTCCATAAATTTAATTTCCTTCTTGGTTTAATAGTCAACAGTAATTTTGTGACAATTTTAGAGAAGCGTGGGAAGTTAGCAAAAATGACGCCTATGACATATGCTCTAGATTTATTACAAAATGAGGAAGTTCAAGCCATCATAGGACCAGCATCCTCCATGCAGGCCAACTTTGTGATTGGTCTCGGAGACAAGGCTCATGTGCCCATCATTTCATTTTCTGCAACTAGTCCTTCTCTTTCTTCGCTCCGGAGTCGATATTTTGTCCGAGCCACACTGAATGACTCAGCTCAAGTACCAGCTATAAGGGCAATCGTCCAAGCCTTTGGGTGGAGACAAGTTGTGCTCATTTACTCGGACAACGAGTACGGAAATGGAGTTATACCATATCTTACTGATGCCTTGCAAGAGATTGACACCCGTATCTCCTACAGGAGCGTCATTCATCCATTAGCCACCGATGATCAAATCCTTGAAGAGCTTTACAAGTTGATGACAATGCCAATCAGAGTTTTCATTGTACACATGTTTACACCTCTAGGCCCACGGCTTTTCACCAGAGCGTATGAGATTGGAATGATGGAAGAAGGTTTTGTTTGGATACTAACTGATGGACTAACTGATATCTTGAGTGCTTTGGATGACTCGGTCATTGATTCGATGCAAGGAGTGTTGGGTGTAAAGCCTCATGTTCCAAGATCGAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGAAAATCCAACAAGAATATCCAACCAATGAAAGCTTTGAGCTGAACATTTTTGGACTCTGGGCTTATGATGCTGCTTCTGGGCTAGCCATGGCAGTTGAAAAACTTGGAGCAACAAACTTCAGCTTCCAAAAGTCTAATACTTCCAGAAATTCAACTGATCTTGATACTGTAGGAGTCTCCCAAATTGGTCCAAATCTTCTCCAATCACTATTAAGTACTAGATTTAAGGGCCTTAGTGGACACTTTCAAATTTTTAACAGGCAACTACGCTCATCAGCTTTTCAGGTAGTCAATGTGATCGGCAAAGGGGAAAGAGGGGTTGGATTTTGGACACCAGAGAATGGAACTGTAAGAAAGTTACATTCGACTTCCAAGACCAATCTAGGAACAATCGTATGGCCAGGAGAATCACCCTCTGTTCCTAAAGGTTGGGTCCTTCCAACCAATGAGAAGAAGATGAGAATAGGAGTACCAGTCACCAAGGGTTCTGGTAAATTCGTAAAGGTGACACGAGATCCTAGCACTAACGCGACGGAGGTCACTGGATTTTCCATTGCAGTCTTCGATGCAGTGATGGCAGCATTACCATATGCTGTTCCTTATGAGTACATTCCCTTCCAGACGCCTGATGGTGAACCAGCGGGTGATTACAACGATTTGATATATCAAGTATATCTCAAGAAGTATGATGCTGTGGTGGGAGATACTACTATTCTAGCGAACAGGTCCTTGTATGTAGACTTCACACTACCGTACACAGAATCTGGGGTGTCAATGATCGTGCCCATCATAGATAAAAGAAGAAAAAATGCATGGGTTTTCTTGAAGCCACTTACTTGGGACCTTTGGGTGACAAGCTCTTGTTTCTTTGTATTCATTGGCTTTGTGATTTGGGTTCTTGAACATCGAGTAAATAAAGATTTCAGAGGGCCTCGTTCACATCAAGTTGGCACTATCTTCTGGTTTTCATTCTCAACATTGGTGTTTGCTCAGAAGGAGAGAATTGTCAACAACTTGGCTCGGTTTGTGGTGATCATATGGCTTTTTGTGGTGCTGATTCTTACTCAAAGTTACACAGCCAGCTTGACTTCAATGTTGACAGTTCAACAGCTCAACCCAACCATCACCGATATAAATGAGCTCATAAAGAAGGGGGAGCGTGTAGGTTGCCAACATGCCTCTTTCGTTCATGAATTCTTGATCGAATCGATGAAATTTGATGAGTCCAACCTTGTAATCTATGAGTCAACAGAAGTACTGGATGAATTATTTTCAAAAGGTAGAATTGCTGCCGCATTTGATGAAATCCCTTACATTAAGCTTTTCCTTGCAAAATATTGCTCCAAATACACTGCAGTTGGACCAACATACAAGTTTGATGGGTTTGGATTTGTGTTTCCAAAGGGTTCACCCCTTGTAGCTGATGTTTCAAGGCAAGTCTTAAACGTGACTGAGGGAGCTAAAATGCTACAATTTGAGAAGGCATGGTTTGGGCAAACACCCAGTTGTCCAGAGCTCACCAGCTCAGTTTCTTCAGACAGCATCGGCCTTAATAGCTTTTGGGGCCTATTCCTCATTGCTGGAATCGCTTCATTTGTAGCTCTCATCACATGCATCACCACATTCCTTTATGAAAATAGAGATGCATTAATAAACTTGAATTCCCCATCTTCCATATGGAGAAAAATTAAAGCCATGGTGACACGCTTTGATGACAAAGATCTTAGGTCCCATACTTTTAGAAAAAGTGATCAACTTCAAGACAAGCGGCATCAAAGCCATGGATGCAGCTACACCAACTTCCCTCCAAGTCCATCGAGCCTTTTGCTCCCAACACACAACAATTTTTCTTTCTTCAGAGAACAAGGAACACCTTCTTCTGGACATGCTGATCCAGTCGGTCCAAATCGGCCCATGTCTCCACATATATTGTTTGGATATGAGCTTGCTAATATAAATCACGAGCAAACAAGACCGCTTCCATTACATGGCCAAGAGAATCTACTTTTGCTTCCTAAAGGTTGGGTGTCTCCTACCAACGGAAAGAAGATGAAGATAGGAGTTCCAATGAAAGAGGGTTTTAATGAATTTGTGAAGGTGACGCAAGATCCTATCCCTAATACAACAAAGGTCATTGGTTACTTCATCGCTTTCTTTGATGTTGTAATGGCAACATTTGCCATATGTAGGAAACTGCCATCCTTTTGCAATGAAATATCTCACCAATTTTACCTCTACTTTTATGATGAACAAATGTATGACAATGTGGTGGGAGATACTACTATTCTAGCGAACAGGTCTTTGTATGTAGACTTTACACTACCTTACACCAAGTTTGGCATATCAACGATCATGCCCATCATTGATAATAGAAGTAAAAATGCATGGTTTGATAATTTTCCTGGTTTTGTGGATAACACTAAGGGCTGCAAACAACTTACAGGGTTCCTCTTTGACAGTATGATAGAATATTTAGACACGAAATACTACATGCGCTCTGATTCAGGATGCAAGACATGGACTAGACTGCTATGGTGGATGAATGGGAAGAAGTTGATCAAGTTAGTTGTTGAGGAGGTTAGGAGATGGGCAGATTTAGCTGGAAGGGTTTCTAATGAAGTAATAGAGTGGGAGATGAGTCACTCTTTGCGAAAATGGACTGATTTTGAGATCAAGGAGTTATGCAAATCATTGCAGAAAACCATGAGCCGAAGCTCAATGCCTACAAATATGAGTCTGGATGAAGCTGTAAAACTGGTGAAGCAAGGGGTGCTTAAGCCTCAGGATTTCATATTCTTTGTTGGATATGTTGGGTGGCAGTCGGATCAGTTGGAGAGAAGAGATTGGATCAGACTATTAGTATGTGGCTACATACAGCCCAAACGTGATCAGTGTGGTCTCAACAGGATCTTCCTCTGGTCTATGAGAGGAGATTTCATCGTCAAAGGGGTAATGAGAAAGAACCTTAGCCAACTCCTTACCTCTCTCTTGTTCGTTCTCTTTCCCACGATTTTCTTCATTGAAATGAGCATGGCACAGAACACAACAATACCGGTTAAAGTGGGAGTGGTTCTTGACATGGACACATGGCTGGGGAAGATGGGTTTGAGCTGCATCTCCATGGCGCTCTCAGACTTCTATGCCTCTCATGGGCACTACAAGACTAGGCTGGTTCTGGAAATCAGAGATTCCAAAAGGGATGTTATGGGTGCAGCTGCAGCAGCTCTAGATTTATTACAAAATGAGGAAGTTCAAGCCATCATAGGACCAGCATCCTCCATGCAGGCCAACTTTGTGATTGGTCTCGGAGACAAGGCTCATGTGCCCATCATTTCATTTTCCGCAACTAGTCCTTCCCTTTCTTCGCTGCGGAGTCGATATTTTGTCCGAGCCACACTGAATGACTCAGCTCAAGTACCAGCTATGAGGGCAATTGTCCAAGCCTTTGGGTGGAGAGAAGTTGTGCTCATTTACGTGGACAACGAGTATGGAAATGGAGTGATACCATATCTTACTGATGCCTTGCAAGAGATTGACACCCGTATCTCCTACCGGAGCGTCATTCATCCATTAGCCACTGATGATCAAATCCTCGAAGAGCTTTACAAGTTGATGACGAAGCCAACCAGAGTTTTCATTGTACACATGCTTACACCTCTAGGCCCACGGCTTTTCACCAGAGCGAATGAGATTGGAATGATGAAAGAAGGTTATGTTTGGATTCTAACTGATGGGTTAACTGATATCTTGAGTACTTTGGATCCATCTGTCATTGATTCAATGCAAGGAGTGCTGGGCGTGAAGCCTCATGTTCCAAGATCGAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGAAAATTCAACAAGAATATCCAACCAATGAAAGCTTTGAGCTGAACATTTTTGGACTCTGGGCTTATGATGCTGCTTCTGGGCTAGCCATGGCAGTTGAAAAACTTGGGCCAACAAACTTCAGCTTCCAAAATCTTCTCCAATCACTATTAAGTACTAGATTTAAGGGCCTCAGTGGACACTTTCAAATTTTGAACAGGCAACTACGTTCATCAGCTTTTCAGGTGGTCAATGTGATCGGCAAAGGGGAAAGAGGGGTTGGATTTTGGACACCAGAGAATGGAACTGTAAGAAAGTTACATTCTACTTCCAAGGCCAATCTAGGAACAATCGTATGGCCAGGAGAATCTCCCTCCGTTCCTAAAGGTTGGGTCCTTCCCACCAATAAGAAGAAGATGAGAATAGGAGTACCAGTCACCAAGGGTTTTGGTGAATTCGTAAAGGTGACACGAGATCCTAGCACTAACGCAACGGAGGTCACTGGATTTTCCATAGCAGTCTTCGATGCAGTGATGGCAGCATTACCATATGCTGTTCCTTATGAGTACAGTCCCTTCCAGACGCCCGATGGCGATCCAGCGGGTGATTACAACGATTTGATATATCAAGTATATCTCCAGAAGTATGATGCTGTGGTGGGAGATACTACTATTCTAGCGAACAGGTCCTTGTATGTAGACTTTACACTACCGTACACATAA 5505 42.89 MVMSRNTTIPVKVGVVLDMDTWLGKMGLSCISMALSDFYASHGHYKTRLVLEIRDSNRDVVGAAAADAKSLHKFNFLLGLIVNSNFVTILEKRGKLAKMTPMTYALDLLQNEEVQAIIGPASSMQANFVIGLGDKAHVPIISFSATSPSLSSLRSRYFVRATLNDSAQVPAIRAIVQAFGWRQVVLIYSDNEYGNGVIPYLTDALQEIDTRISYRSVIHPLATDDQILEELYKLMTMPIRVFIVHMFTPLGPRLFTRAYEIGMMEEGFVWILTDGLTDILSALDDSVIDSMQGVLGVKPHVPRSKELESFKIRWKRKIQQEYPTNESFELNIFGLWAYDAASGLAMAVEKLGATNFSFQKSNTSRNSTDLDTVGVSQIGPNLLQSLLSTRFKGLSGHFQIFNRQLRSSAFQVVNVIGKGERGVGFWTPENGTVRKLHSTSKTNLGTIVWPGESPSVPKGWVLPTNEKKMRIGVPVTKGSGKFVKVTRDPSTNATEVTGFSIAVFDAVMAALPYAVPYEYIPFQTPDGEPAGDYNDLIYQVYLKKYDAVVGDTTILANRSLYVDFTLPYTESGVSMIVPIIDKRRKNAWVFLKPLTWDLWVTSSCFFVFIGFVIWVLEHRVNKDFRGPRSHQVGTIFWFSFSTLVFAQKERIVNNLARFVVIIWLFVVLILTQSYTASLTSMLTVQQLNPTITDINELIKKGERVGCQHASFVHEFLIESMKFDESNLVIYESTEVLDELFSKGRIAAAFDEIPYIKLFLAKYCSKYTAVGPTYKFDGFGFVFPKGSPLVADVSRQVLNVTEGAKMLQFEKAWFGQTPSCPELTSSVSSDSIGLNSFWGLFLIAGIASFVALITCITTFLYENRDALINLNSPSSIWRKIKAMVTRFDDKDLRSHTFRKSDQLQDKRHQSHGCSYTNFPPSPSSLLLPTHNNFSFFREQGTPSSGHADPVGPNRPMSPHILFGYELANINHEQTRPLPLHGQENLLLLPKGWVSPTNGKKMKIGVPMKEGFNEFVKVTQDPIPNTTKVIGYFIAFFDVVMATFAICRKLPSFCNEISHQFYLYFYDEQMYDNVVGDTTILANRSLYVDFTLPYTKFGISTIMPIIDNRSKNAWFDNFPGFVDNTKGCKQLTGFLFDSMIEYLDTKYYMRSDSGCKTWTRLLWWMNGKKLIKLVVEEVRRWADLAGRVSNEVIEWEMSHSLRKWTDFEIKELCKSLQKTMSRSSMPTNMSLDEAVKLVKQGVLKPQDFIFFVGYVGWQSDQLERRDWIRLLVCGYIQPKRDQCGLNRIFLWSMRGDFIVKGVMRKNLSQLLTSLLFVLFPTIFFIEMSMAQNTTIPVKVGVVLDMDTWLGKMGLSCISMALSDFYASHGHYKTRLVLEIRDSKRDVMGAAAAALDLLQNEEVQAIIGPASSMQANFVIGLGDKAHVPIISFSATSPSLSSLRSRYFVRATLNDSAQVPAMRAIVQAFGWREVVLIYVDNEYGNGVIPYLTDALQEIDTRISYRSVIHPLATDDQILEELYKLMTKPTRVFIVHMLTPLGPRLFTRANEIGMMKEGYVWILTDGLTDILSTLDPSVIDSMQGVLGVKPHVPRSKELESFKIRWKRKIQQEYPTNESFELNIFGLWAYDAASGLAMAVEKLGPTNFSFQNLLQSLLSTRFKGLSGHFQILNRQLRSSAFQVVNVIGKGERGVGFWTPENGTVRKLHSTSKANLGTIVWPGESPSVPKGWVLPTNKKKMRIGVPVTKGFGEFVKVTRDPSTNATEVTGFSIAVFDAVMAALPYAVPYEYSPFQTPDGDPAGDYNDLIYQVYLQKYDAVVGDTTILANRSLYVDFTLPYT* 1835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8149429 8183352 + Vvi4g635 Vvi4g635 785414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g635 1834 Pfam Domain of unknown function (DUF4378) 1131 1207 IPR025486 -
Vvi4g635 1834 Gene3D - 1617 1732 - -
Vvi4g635 1834 Gene3D - 339 472 - -
Vvi4g635 1834 SUPERFAMILY Periplasmic binding protein-like II 444 815 - -
Vvi4g635 1834 SUPERFAMILY Periplasmic binding protein-like I 1334 1725 IPR028082 -
Vvi4g635 1834 SUPERFAMILY Periplasmic binding protein-like II 1709 1834 - -
Vvi4g635 1834 Gene3D - 1452 1616 - -
Vvi4g635 1834 Gene3D - 166 331 - -
Vvi4g635 1834 CDD PBP1_GABAb_receptor_plant 1336 1701 IPR044440 -
Vvi4g635 1834 Pfam Ligand-gated ion channel 816 846 IPR001320 GO:0015276|GO:0016020
Vvi4g635 1834 Pfam Bacterial extracellular solute-binding proteins, family 3 493 815 IPR001638 -
Vvi4g635 1834 CDD GluR_Plant 467 813 - -
Vvi4g635 1834 Gene3D - 993 1116 - -
Vvi4g635 1834 Gene3D - 1733 1834 - -
Vvi4g635 1834 Gene3D - 587 730 - -
Vvi4g635 1834 Gene3D - 758 821 - -
Vvi4g635 1834 CDD PBP1_GABAb_receptor_plant 12 436 IPR044440 -
Vvi4g635 1834 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1334 1834 - -
Vvi4g635 1834 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 918 - -
Vvi4g635 1834 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 985 1113 - -
Vvi4g635 1834 Pfam Receptor family ligand binding region 1354 1681 IPR001828 -
Vvi4g635 1834 Pfam Receptor family ligand binding region 30 416 IPR001828 -
Vvi4g635 1834 Gene3D - 475 586 - -
Vvi4g635 1834 SMART GluR_14 470 815 IPR001320 GO:0015276|GO:0016020
Vvi4g635 1834 PANTHER GLUTAMATE RECEPTOR 2.9 1334 1834 - -
Vvi4g635 1834 PANTHER GLUTAMATE RECEPTOR 2.9 10 918 - -
Vvi4g635 1834 PANTHER GLUTAMATE RECEPTOR 2.9 985 1113 - -
Vvi4g635 1834 SUPERFAMILY Periplasmic binding protein-like I 10 460 IPR028082 -
Vvi4g635 1834 SUPERFAMILY Periplasmic binding protein-like II 986 1118 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g635 K05387 - vvi:100241793 1802.33