Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g636 ATGATCGTGCCCATCGTAGATAGAAGAAGAAAAAATGCATGGGTTTTCTTGAAGCCACTTACTTGGGACCTTTGGGTGACAAGCTCTTGTTTCTTTGTATTCATTGGCTTTGTGATTTGGGTTCTTGAACATCGAGTAAATAAAGATTTCAGAGGGCCTCGTTCACATCAAGTTGGCACTATCTTCTGGTTTTCATTCTCAACATTGGTGTTTGCTCAGAAGGAGAGAATTGTCAACAACTTGGCTCGGTTTGTGGTGATCATATGGCTTTTTGTGGTGCTGATTCTTACTCAAAGTTACACAGCCAGCTTGACTTCAATGTTGACAGTTCAACAGCTCAACCCAACCATCACCGATATAAATGAGCTGATAAAGAAAGGGGAGCGTGTAGGTTGCCAACATGCCTCTTTCGTTCATGAATTCTTGATCAAATGGATGAAATTTGATGAGTCTAAGCTAGTAATCTATGAGTCACCAGAAGAACTGGATGAATTATTTTCAAAAGGTGGAATTGCTGCTGCATTTGATGAAATCCCTTACATGAAGATTTTCCTTGCAAAATATTGCTCCAAATACACTGCAGTCGGACCAACGTACAAGTTTGATGGCTTTGGATTTGTGTTTCCAAAGGGTTCACCCCTTGTAGCTGATGTTTCAAGGCAAGTCTTAAACGTGACAGAGGGAGCTAAAATGCTACAATTTGAGAAGGCATGGTTTGGGCAACCAACCAGTTGTCCAGAGCTCACCAACTCAGTTTCTTCAAACAGCATCGGCCTGAATAGCTTTTGGGGCCTATTCCTCATTGCTGGAGTCGCTTCATTTGTAGCTCTCATCACATGCATCACCACATTCCTTTATGAAAATAGAGATGCCTTAATAAACTTGAATTCCCCATCTTCGATATGGAGAAAAATTAAAGCCATGGTGACACGCTTTGACGACAAAGATCTTAGGTCCCATACTTTTAGAGAAAGCGATCAACTTCAAGACGAGCGACATCAAAGCCATGGATGCAGCTACACCAACTTCCCTCCAAGTCCATCGAGCCTTTTGATCCCAACACACAATAATTATGCTTTCTTCGGAGAACAAGGAACACCTTCTTCTGGACATGCTGATCCAGTCGGTCCAAATCGGCCAATGTCTCCACATATAATGTTTGAATATGAGCTTGCTAATATAAATCACGAGTAA 1194 41.62 MIVPIVDRRRKNAWVFLKPLTWDLWVTSSCFFVFIGFVIWVLEHRVNKDFRGPRSHQVGTIFWFSFSTLVFAQKERIVNNLARFVVIIWLFVVLILTQSYTASLTSMLTVQQLNPTITDINELIKKGERVGCQHASFVHEFLIKWMKFDESKLVIYESPEELDELFSKGGIAAAFDEIPYMKIFLAKYCSKYTAVGPTYKFDGFGFVFPKGSPLVADVSRQVLNVTEGAKMLQFEKAWFGQPTSCPELTNSVSSNSIGLNSFWGLFLIAGVASFVALITCITTFLYENRDALINLNSPSSIWRKIKAMVTRFDDKDLRSHTFRESDQLQDERHQSHGCSYTNFPPSPSSLLIPTHNNYAFFGEQGTPSSGHADPVGPNRPMSPHIMFEYELANINHE* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8183364 8184920 + Vvi4g636 Vvi4g636 785415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g636 397 CDD GluR_Plant 97 239 - -
Vvi4g636 397 Pfam Ligand-gated ion channel 22 272 IPR001320 GO:0015276|GO:0016020
Vvi4g636 397 Pfam Bacterial extracellular solute-binding proteins, family 3 96 241 IPR001638 -
Vvi4g636 397 Gene3D - 187 247 - -
Vvi4g636 397 SMART GluR_14 23 241 IPR001320 GO:0015276|GO:0016020
Vvi4g636 397 Gene3D - 8 155 - -
Vvi4g636 397 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 344 - -
Vvi4g636 397 PANTHER GLUTAMATE RECEPTOR 2.9 1 344 - -
Vvi4g636 397 SUPERFAMILY Periplasmic binding protein-like II 96 245 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g636 K05387 - vvi:100241108 759.985