Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g637 ATGGCACAGAACACAACAATACCAGTTAAAGTGGGAGTGGTTCTGGACTTGGATACATGGGTTGGGAAGATGGGCTTGAGCTGCATCTCCATGGCCCTTTCAGACTTGTATGCCTCTCATGGTCACTACAAAACCAGGGTGGTTACAAAAATCAGAGACTCCAAAAGAGATGTTGTTGGTGCAGCTGCAGCAGCTCTAGATTTATTACAAAATGAGGAAGTTCAAGCCATCATAGGACCAGCATCCTCCATGCAGGCCAACTTTGTGATTGGTCTCGGAGACAAGGCTCATGTGCCCATCATTTCATTTTCCGCAACTAGTCCTTTCCCTTTCTTCGCTCCGGACGTCATTCATCCATTAGCCACTGATGATCAAATCCTCGAAGAGCTTTACAAGTTGATGACGATGCCAACCAGAGTTTTCATTGTACACATGCTTACACCTCTAGGCTCACGGCTTTTCACCAGAGCGAATGAGATTGGAATGATGAAAGAAGGTTATGTTTGGATTCTAACTGATGGGTTAACTGATATCTTGAGTACTTTGGATCCATCTGTCATTGATTCAATGCAAGGAGTGTTGGGCGTGAAGCCTCATAATATCCAAACAAGAAAATCACTTTATATTGATTTTCTGGATTACACAGCCAGCTTGACTTCAATGTTGAGAGTTCAACAGCTCAACCCAACCATCACCGATATAAATGAGCTGATAAAGAAAGGGGAGCGTGTAGGTTGCCAACATGCCTCTTTCGTTCATGAATTCTTGATCAAATGGATGAAATTTGATGAGTCCAAGCTTGTAATCTATGAGTCACCAGAAGAACTGGATGAATTATTTTCAAAAGGTGGAATTGCTGCTGCATTTGATGAAATCCCTTACATGAAGACTTTCCTCCCAAAATATTGCTCCAAATACACTGCAGTGGGACCAAGATACAAGTTTGATGGGTTTAGATTTGTGTTTCCAAAGGGTTCACCCCTTGTAGCTGATGTTTCAAGGAAAGTCTTAAACGTGACCGAGGGAGCCAAAATGCTACAATTTGAGAAGGCGTGGTTTGGGCAAACACCCAGTTGTCCAGAGCTCACCAGCTCAGTTTCTTCAGACAGCATCGGGCTTAATAGATTTTGGGGCCTATTCCTCATTGCTGGAGTCGCTTCATTTGTAGCTCTCATCACATGCATCATCACATTCCTTTATGAAAATAGAGACGCATTAATAAACTTGAATCCCTCATCTTCCATATGGAGAAAATTTAAAGCCATGGTGACACGCTTTGACCACAAAGATCTTAGGTCCCATACTTTTAGAAAAAGTGATCAACTTCAAGACAAGAGGCATCAAATCCATGGATGCAGCTACACCAACTTCCCTCCAAGTCCATCGAGCCTTTTGATCCCAACCGCCAACAATTTTGCTTTCTTCGGAGAACAAGGAACACCTTCTTCTGGACATGCTGATCCAGTCGGTCCAAATCGGCGGATGTCTCCACATATATTGTTTGAATATGAGCTTGCTAATATAAATCACGAGCAAACGAAGACCGCATGTAATTGA 1557 42.84 MAQNTTIPVKVGVVLDLDTWVGKMGLSCISMALSDLYASHGHYKTRVVTKIRDSKRDVVGAAAAALDLLQNEEVQAIIGPASSMQANFVIGLGDKAHVPIISFSATSPFPFFAPDVIHPLATDDQILEELYKLMTMPTRVFIVHMLTPLGSRLFTRANEIGMMKEGYVWILTDGLTDILSTLDPSVIDSMQGVLGVKPHNIQTRKSLYIDFLDYTASLTSMLRVQQLNPTITDINELIKKGERVGCQHASFVHEFLIKWMKFDESKLVIYESPEELDELFSKGGIAAAFDEIPYMKTFLPKYCSKYTAVGPRYKFDGFRFVFPKGSPLVADVSRKVLNVTEGAKMLQFEKAWFGQTPSCPELTSSVSSDSIGLNRFWGLFLIAGVASFVALITCIITFLYENRDALINLNPSSSIWRKFKAMVTRFDHKDLRSHTFRKSDQLQDKRHQIHGCSYTNFPPSPSSLLIPTANNFAFFGEQGTPSSGHADPVGPNRRMSPHILFEYELANINHEQTKTACN* 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8186336 8201310 + Vvi4g637 Vvi4g637 785416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g637 518 Gene3D - 1 116 - -
Vvi4g637 518 SUPERFAMILY Periplasmic binding protein-like II 203 359 - -
Vvi4g637 518 Pfam Ligand-gated ion channel 356 386 IPR001320 GO:0015276|GO:0016020
Vvi4g637 518 Gene3D - 117 215 - -
Vvi4g637 518 SUPERFAMILY Periplasmic binding protein-like I 8 212 IPR028082 -
Vvi4g637 518 Pfam Receptor family ligand binding region 28 109 IPR001828 -
Vvi4g637 518 Pfam Receptor family ligand binding region 122 205 IPR001828 -
Vvi4g637 518 Pfam Bacterial extracellular solute-binding proteins, family 3 205 355 IPR001638 -
Vvi4g637 518 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 8 109 - -
Vvi4g637 518 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 214 457 - -
Vvi4g637 518 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 116 205 - -
Vvi4g637 518 Gene3D - 234 357 - -
Vvi4g637 518 PANTHER GLUTAMATE RECEPTOR 2.9 214 457 - -
Vvi4g637 518 PANTHER GLUTAMATE RECEPTOR 2.9 116 205 - -
Vvi4g637 518 PANTHER GLUTAMATE RECEPTOR 2.9 8 109 - -
Vvi4g637 518 SMART GluR_14 102 355 IPR001320 GO:0015276|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g637 K05387 GRIP; glutamate receptor, ionotropic, plant - vvi:100241793 595.119
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g637 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g00040
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202