Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g64 ATGAACGGCATCGGCGGAGAGGAGGTCACGGCTCGGGCGGAGCCGGCTCGGCCGCTGGAGTGGAAATTTGCGCAGGTGTTTGGGGAGCGGGCGTTTGGGGAGGAAGTTCAGGAAGTTGATATCATATCAGCTATTGAGTTTGATAAAACTGGGGACCATCTTGCTACTGGAGATCGTGGGGGTCGGGTGGTTTTATTTAACAGAACTGATACGAGGGATCATGGTGGGAATCGAAGAGATTTAGAGATGGCGGATTATTCACCAAGCAGGCATCCTGAGTTCCACTATAAAACCGAGTTTCAGAGCCATGAACCAGAGTTTGACTATCTCAAGAGCTTGGAAATTGAGGAGAAAATCAACAAGATTAGATGGTGTCAGACAGCTAACAGCGCACTGTTTCTTCTCTCCACTAATGATAAAACCATCAAATTCTGGAAGGTCCAAGAGAAGAAGGTCAAGAAAGTATGTGACATGAATGTTGACCCTTCAAAAGCTTTGGGAAATGGATGTGTCAACAGAACCTTCAATTATTTGAGCACTGACTTTTCATTTCCACCTGGGGGAATACCATTCCTACATTTGCCCAGGGTGATGAGTCATGAGACAAGCTCAGTGGCCAGGTGTCGGAGAATTTATGCTCATGCCCATGACTATCATATCAATTCCATTTCAAATAACAGTGATGGTGAAACTTTTATATCAGCTGATGATCTCCGGATAAATCTCTGGAACTTGGAAATTAGCAGTCAAAGTTTCAACATTGTTGATGTGAAGCCTGCAAACATGGAGGATCTAACTGAGGTTATAACTTCAGCAGAATTTCATCCTTCCCACTGCAATATGTTAGCATATAGTAGCTCAAAAGGCTCAATCCGTCTTATTGATTTGCGGCAATCAGCTTTATGTGATACACATTGCAAATTGTTTGAGGAACTGGAGGCATCTACTTCAAGATCTTTTTTTACAGAGATAATTGCCTCAATTTCTGATATAAAGTTTTCAAAGGATGGAAGACATTTACTTAGTCGTGATTATATGACACTTAAGTTGTGGGACATAAATATGGAGTCTGTGCCAGTCGCAACTTTCCAAGTTCATGAGCATTTAAGACCTAAGCTGTGTGATTTATATGAAAATGATTCTATCTTCGACAAATTTGAGTGTTGTCTGAGTGGAGATGGACTACGAGTGGCGACTGGTTCCTACAGTAATCTATTTCGTGTATTTGGTTGTTCTGAAGGCAGCACAGAAGCCACAACTTTGGAAGCCAATAAAAATCCCATGATGAGGCAAGTCCAGACCCCCTCAAGGCCTTCTAGATCCCTGGGCTCTCTATCTCGTGTTGGCAGGCGAGGAACAGATAGTTCTGGAGCTGACACAAATGGAAACGCTTTTGATTTCATGACAAAGTTGCTCCATTTAGCCTGGCATCCAACTGAAAACTCCCTAGCTTGCGCCACTTCAAACAGCCTGTACATGTACTATGCATAA 1491 43.13 MNGIGGEEVTARAEPARPLEWKFAQVFGERAFGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFNRTDTRDHGGNRRDLEMADYSPSRHPEFHYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANSALFLLSTNDKTIKFWKVQEKKVKKVCDMNVDPSKALGNGCVNRTFNYLSTDFSFPPGGIPFLHLPRVMSHETSSVARCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISSQSFNIVDVKPANMEDLTEVITSAEFHPSHCNMLAYSSSKGSIRLIDLRQSALCDTHCKLFEELEASTSRSFFTEIIASISDIKFSKDGRHLLSRDYMTLKLWDINMESVPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCSEGSTEATTLEANKNPMMRQVQTPSRPSRSLGSLSRVGRRGTDSSGADTNGNAFDFMTKLLHLAWHPTENSLACATSNSLYMYYA* 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 716416 725089 - Vvi4g64 Vvi4g64 784843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g64 496 PIRSF PPA2_B55 9 496 IPR000009 GO:0000159|GO:0019888
Vvi4g64 496 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 172 496 - -
Vvi4g64 496 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 3 172 - -
Vvi4g64 496 SUPERFAMILY WD40 repeat-like 40 490 IPR036322 GO:0005515
Vvi4g64 496 SMART WD40_4 356 410 IPR001680 GO:0005515
Vvi4g64 496 SMART WD40_4 106 146 IPR001680 GO:0005515
Vvi4g64 496 SMART WD40_4 255 295 IPR001680 GO:0005515
Vvi4g64 496 SMART WD40_4 314 352 IPR001680 GO:0005515
Vvi4g64 496 SMART WD40_4 32 67 IPR001680 GO:0005515
Vvi4g64 496 SMART WD40_4 205 244 IPR001680 GO:0005515
Vvi4g64 496 Pfam WD domain, G-beta repeat 208 244 IPR001680 GO:0005515
Vvi4g64 496 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 214 228 IPR018067 -
Vvi4g64 496 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 172 496 IPR000009 GO:0000159|GO:0019888
Vvi4g64 496 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 172 IPR000009 GO:0000159|GO:0019888
Vvi4g64 496 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 106 120 IPR018067 -
Vvi4g64 496 MobiDBLite consensus disorder prediction 424 460 - -
Vvi4g64 496 Gene3D - 79 494 IPR015943 GO:0005515
Vvi4g64 496 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 46 66 IPR000009 GO:0000159|GO:0019888
Vvi4g64 496 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 93 121 IPR000009 GO:0000159|GO:0019888
Vvi4g64 496 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 122 150 IPR000009 GO:0000159|GO:0019888
Vvi4g64 496 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 216 243 IPR000009 GO:0000159|GO:0019888
Vvi4g64 496 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 244 271 IPR000009 GO:0000159|GO:0019888
Vvi4g64 496 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 272 300 IPR000009 GO:0000159|GO:0019888
Vvi4g64 496 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 301 328 IPR000009 GO:0000159|GO:0019888
Vvi4g64 496 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 329 356 IPR000009 GO:0000159|GO:0019888
Vvi4g64 496 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 357 382 IPR000009 GO:0000159|GO:0019888
Vvi4g64 496 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 383 409 IPR000009 GO:0000159|GO:0019888
Vvi4g64 496 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 465 494 IPR000009 GO:0000159|GO:0019888
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g64 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B - vvi:100257641 975.696
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g64 Vvi11g214 ECH
Vvi4g64 Vvi9g198 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g64 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag0919 Cone20ag0262 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001053 3 3 4 2 3 2 4 2 2 2 2 2 4 2 2 3 2 5 4 2 2 2 2 2 2 2 2 5 3 3 80