Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g641 ATGCAGGCCAACTTTGTGATTGGTCTCGGAGACAAGGCTCATGTGCCCATCATTTCATTTTCCGCAACTAGTCCTTCCCTTTCTTCGCTCCGGAGTCCATATTTTGTCCGAGCCACACTGAATGACTCAGCTCAAGTACCAGCTATAAGGGCAATTGTCCAAGCCTTTGAGTGGAGAGAAGTTGTGCTCATTTACGTGGACAACGAGTATGGAAATGGAGTAATACCATATCTTACTGATGCCTTGCAAGAGATTGACACCCGTATCTCCTACAGGAGCGTCATTCATCCATTAGCCACCGATGATCAAATCCTCGAAGAGCTTTACAAGTTGATGACAATGCCAACCAGAGTTTTCATTGTACACATGTTTACACCTCTAGGCCCACGGCTTTTCACCAGAGCGAATGAGATTGGAATGATGAAAGAAGGTTATGTTTGGATTCTAACTGATGGGTTAACTGATATCTTGAGTACTTTGGATCCATCTGTCATTGATTCAATGCAAGGAGTGTTGGGCGTGAAGCCTCATGTTCCAAGATCGAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGAAAATCCAACAAGAATATCCAACCAATGAAAGCTTTGAGCTGAACATTTTTGGACTCTGGGTTTATGATGCTGCTTCTGGGCTAGCCATGGCAGTTGAAAAACTTGGGCCAACAAACTTCAGCTTCCAAAAGTCTAATATTCACAGAAATTCAACCGATCTTGATACTGGCCTCAGTGGACACTTTCAAATTTTTAACGGCCAACTACGGTCATCAGCTTTTCAGGTAGTCAATGTGATCGGCAAAGGGGAAAGAGGGGTCGGATTTTGGACACCAGAGAATGGAACTGTAAGAAATTTACATTCTACTTCCAAGGCCAATCTAGGAACAATCGTATGGCCAGGAGAATCTCCCTCCGTTCCTAAAGGTTGGGTCCTTCCCACCAATAAGAAGAAGAAGAGAATAGGAGTACCAGTCACCAAGGGTTTTGGCGAATTCGTAAACGTGACACGAGATCCTAGCACTAACGCAACGGAGGTCACTGGATTTTCCATAGCAGTCTTCGATGCGGTGATGGCAGCATTACCATATGCTGTTCCTTATGAGTACAGTCCCTTCCAGACGCCCGATGGCGATCCAGCGGGTGATTACAACGATTTGATATATCAAGTATATCTCCAGAAGTATGAAGCTGTGGTGGGAGATACTACTATTCTAGCGAACAGGTCCTTGTATGTAGACTTTACACTACCGTACACAGAATCTGGGGTGTCAATGATCGTGCCCATCGTAGATAGAAGAGCAAAAAATGCATGGGTTTTCTTGAAGCCACTTACTTGGGACCTTTGGGTGACAACCTCTTGTTTCTTTGTATTCATTGGCTTTGTGATTTGGGTTCTTGAACATCGAATAAATAAAGATTTCAGAGGGCCTCGTTCACATCAAGTTGGCACTATCTTCTGGTTTTCATTCTCAACATTGGTGTTTGCTCAGAAGGAGAGAATTGTCAATAACTTGGCTCGGTTTGTGGTGATCATATGGCTTTTTGTGGTTCTGATTCTTACTCAAAGTTACACAGCCAGCTTGACTTCAATGTTGACAGTTCAACAGCTCAACCCAACCATCACCGATATAAATGAGCTCATAAAGAAAGGGGAGCGTGTAGGTTGCGAACATGGCTCTTTCGTTCATGAATTCTTGATCGAATCAATGAAATTTGATGAGTCCAAGCTTGTAATCTATAAGTCACCAGAAGAACTGGATGAGTTATTTTCAAAAGGTGGAATTGCTGCTGCATTTGATGAAATCCCTTACATGAAGATTTTCCTTGCAAAATATTGCTCCAAATACACTGCAGTCGGACCAACGTACAAGTTTGATGGGTTTGGATTTGTGTTTCCAAAAGGTTCACCCCTTGTAGCCGATGCTTCAAGGGAAGTCTTAAACGTGACAGAGGGAGCTAAAATGCTACAATTTGAGAAGGCATGGTTTGGGCAAACACCCAGTTGTCCAGAGCTCACCAACTCAGTTTCTTCAAACAGCATCGGCCTGAATAGCTTTTGGGGTCTATTCCTCATTGCTGGAATCGCTTCATTTGTAGCTCTCATCACATGCATCACCACATTCCTTTATGAAAATAGAGATGCCTTAATAAACTTGAATTCCCCATCTTCAATATGGAGAAAAATTAAAGCCATGGTGACACGCTTTGACGACAAAGATCTTAGGTCCCATACTTTTAGAGAAAGTGATCAACTTCAAGACGAGCAACATCAATGCCATGGATGCAGCTACACCAACTTCCCTCCAAGTCCATCGACCCTTTTGATCCCAACACACAATAATTCTGCTTTCTTCGGAGAACAAGGAACACCTTCTTCTGGACATGCTGATCCAGTCTGTCCAAATCGGCCGATGTCTCCCCATATAATGTTTGAATATGAGCTTGCTAATATAAATCACGAGCAAACAAGACAGCCTATGGTCATGTCACGGAACACAACAATACCGGTTAAAGTGGGAGTGGTTCTTGACATGGATACATGGCTGGCGAAGATGGGCTTGAGATGCATCTCCATGGCCCTCTCAGAGTTCTATGCCTCTCATGGGCACTACAAGACTAGGCTGGTTCTGGAAATCAGAGATTCCAAAAGAGATGTTGTGGGTGCAGCTGCAGCAGCTCTAGATTTATTACAAAATGAGGAAGTTCAAGCCATCATTGGACCAGCATCCTCCATGCAGGCCAACTTTGTGATTGGTCTCGGAGACAAGGCCCATGTGCCCATCATTTCATTTTCTGCAACTAGTCCTTCTCTTTCTTCGCTCCGGAGTCGATATTTTGTCCGAGCCACACTGAATGACTCAGCTCAAGTACCAGCTATAAGGGCAATCGTCCAAGCCTTTGGGTGGAGAGAAGTTGTGCTCATTTACGTGGACAACGAGTATGGAAATGGAGTGATACCATATCTTACTGATGCCTTGCAAGAGATTGACACCCGTATCTCCTACAGGAGCGTCATTCATCCATTAGCCACCGATGATCAAATCCTCGAAGAGCTTTACAAGTTGATGACAATGCCAACCAGAGTTTTCATTGTACACATGTTTACACCTCTAGGCCCACGGCTTTTCACCAGAGCGAATGAGATTGGAATGATGAAAGAAGGTTATGTTTGGATTCTAACTGATGGGTTAACTGATATCTTGAGTACTTTGGATCCATCTGTCATTGATTCAATGCAAGGAGTGTTGGGCGTGAAGCCTCATGTTCCAAGATCGAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGAAAATCCAACAAGAATATCCAACCAATGAAAGCTTTGAGCTGAACATTTTTGGACTCTGGGCTTATGATGCTGCTTCTGGGCAAGCCATGGCAGTTGAAAAACATGGGCCAACAAACTTCAGCTTCCAAAATCTTCTCCAATCACTATTAAGTACTAGATTTAAGGGCCTTAGTGGACACTTTCAAATTTTTAACAGTCAACTACGTTCATCAGCTTTTCAGGTAGTCAATGTGATCGGCAAAGGGGAAAGAGGGGTTGGATTTTGGACACCAGAGAATGGAACTGTAAGAAAGTTACATTCCACTTCCAAGGCCAATCTAGGAACAATCGTATGGCCAGGAGAATCACCCTCCGTTCCTAAAGGTTGGGTCCTTCCAACCAATGAGAAGAAGATGAGAATAGGAGTACCAGTCACCAACGGTTCTGGTAAATTCGTAAAGGTGACACGAGATCCTAGCACTAACGCGACCGAGGTCACTGGATTTTCCATTGCAGTCTTCGATGCAGTGATGGCAGCATTACCATATGCTGTTCCTTATGAGTACATTCCCTTCCAGACGCCTGATTACAACGATTTGATATATCAAGTATATCTCAAGAAGTATGATGCTGTGGTGGGAGATACTACTATTCTAGCGAACAGGTCCTTGTATGTAGACTTCACACTACCGTACACAGAATCTGGGGTGTCAATGATCGTGCCCATCATAGATAGAAGAAGAAAAAATGCATGGGTTTTCTTGAAGCCACTTACTTGGGACCTTTGGGTGACAACCTCTTGTTTCTTTGTATTCATTGGCTTTGTGATTTGGGTTCTTGAACATCGAGTAAATAAAGATTTTAGAGGGCCTCGTTCACATCAAGTTGGCACTATCTTCTGGTTTTCATTCTCAACATTGGTGTTTGCTCAGAAGGAGAGAATTGTCAGCAACTTGGCTCGGTTTGTGGTGATCATATGGCTTTTTGTGGTGCTGATTCTTACTCAAAGTTACACAGCCAGCTTGACTTCAATGTTGACAGTTCAACAGCTCAACCCAACCATCACCGATATAAATGAGCTCATAAAGAAAGGGGAGCGTGTAGGTTGCGAACATGGCTCTTTCGTTCATGAATTCTTGATCGAATCGATGAAATTTGATGAGTCCAACCTTGTAAACTATGAGTCAACAGAAGTACTGGATGAATTATTTTCAAAAGGTAGAATTGCTGCCGCATTTGATGAAATCCCTTACATTAAGCTTTTCCTTGCAAAATATTGCTCCAAATACACTGCAGTTGGACCAACATACAAGTTTGATGGGTTTGGATTTGTGTTTCCAAAGGGTTCACCCCTTGTAGCTGATGTTTCGAGGCAAGTCTTAAACGTGACCGAGGGAGCTAAAATGCTACAATTTGAGAAGGCATGGTTTGGGCAAACACCCAGTTGTCCAGAGCTCACCAACTCAGTTTCTTCAAACAGCATCGGCCTTAATAGCTTTTGGGGCCTATTCCTCATTGCTGGAATCGCTTCATTTGTAGCTCTCATCACATGCATCACCACATTCCTTTATGAAAATAGAGATGCATTAATAAACTTGAATTCCCCATCTTCCATATGGAGAAAAATTAAAGCCATGGTGACACGCTTTGACGACAAAGATCTTAGCTATGATGAATTGAAATCTCAAGTATATTTTCAGAAGTATGACATTGTGGTGGGAAATACTACTATTCTAGATAACAGGTCTTTGTATGGAGACTTTACACTACCTTACACCGAGTTTGGCATATCAATGATCGTGCCCATTATCGATAATAGAAATTTTAGAGGGCCTTATTCACATCAAGTTGGCACATTTTTCTGGTTCTCCTTCTCAACATTGGTTCGTAAGGGAGTAGACGTACACAACCCAACTACATGTTCTCTAGTGGAGATTTTTAGATGGGACTTCTATGTCATTTTATGGTTAGCCGGTTTTATGCTTATGAAATGGAGGTATACATGA 5319 42.64 MQANFVIGLGDKAHVPIISFSATSPSLSSLRSPYFVRATLNDSAQVPAIRAIVQAFEWREVVLIYVDNEYGNGVIPYLTDALQEIDTRISYRSVIHPLATDDQILEELYKLMTMPTRVFIVHMFTPLGPRLFTRANEIGMMKEGYVWILTDGLTDILSTLDPSVIDSMQGVLGVKPHVPRSKELESFKIRWKRKIQQEYPTNESFELNIFGLWVYDAASGLAMAVEKLGPTNFSFQKSNIHRNSTDLDTGLSGHFQIFNGQLRSSAFQVVNVIGKGERGVGFWTPENGTVRNLHSTSKANLGTIVWPGESPSVPKGWVLPTNKKKKRIGVPVTKGFGEFVNVTRDPSTNATEVTGFSIAVFDAVMAALPYAVPYEYSPFQTPDGDPAGDYNDLIYQVYLQKYEAVVGDTTILANRSLYVDFTLPYTESGVSMIVPIVDRRAKNAWVFLKPLTWDLWVTTSCFFVFIGFVIWVLEHRINKDFRGPRSHQVGTIFWFSFSTLVFAQKERIVNNLARFVVIIWLFVVLILTQSYTASLTSMLTVQQLNPTITDINELIKKGERVGCEHGSFVHEFLIESMKFDESKLVIYKSPEELDELFSKGGIAAAFDEIPYMKIFLAKYCSKYTAVGPTYKFDGFGFVFPKGSPLVADASREVLNVTEGAKMLQFEKAWFGQTPSCPELTNSVSSNSIGLNSFWGLFLIAGIASFVALITCITTFLYENRDALINLNSPSSIWRKIKAMVTRFDDKDLRSHTFRESDQLQDEQHQCHGCSYTNFPPSPSTLLIPTHNNSAFFGEQGTPSSGHADPVCPNRPMSPHIMFEYELANINHEQTRQPMVMSRNTTIPVKVGVVLDMDTWLAKMGLRCISMALSEFYASHGHYKTRLVLEIRDSKRDVVGAAAAALDLLQNEEVQAIIGPASSMQANFVIGLGDKAHVPIISFSATSPSLSSLRSRYFVRATLNDSAQVPAIRAIVQAFGWREVVLIYVDNEYGNGVIPYLTDALQEIDTRISYRSVIHPLATDDQILEELYKLMTMPTRVFIVHMFTPLGPRLFTRANEIGMMKEGYVWILTDGLTDILSTLDPSVIDSMQGVLGVKPHVPRSKELESFKIRWKRKIQQEYPTNESFELNIFGLWAYDAASGQAMAVEKHGPTNFSFQNLLQSLLSTRFKGLSGHFQIFNSQLRSSAFQVVNVIGKGERGVGFWTPENGTVRKLHSTSKANLGTIVWPGESPSVPKGWVLPTNEKKMRIGVPVTNGSGKFVKVTRDPSTNATEVTGFSIAVFDAVMAALPYAVPYEYIPFQTPDYNDLIYQVYLKKYDAVVGDTTILANRSLYVDFTLPYTESGVSMIVPIIDRRRKNAWVFLKPLTWDLWVTTSCFFVFIGFVIWVLEHRVNKDFRGPRSHQVGTIFWFSFSTLVFAQKERIVSNLARFVVIIWLFVVLILTQSYTASLTSMLTVQQLNPTITDINELIKKGERVGCEHGSFVHEFLIESMKFDESNLVNYESTEVLDELFSKGRIAAAFDEIPYIKLFLAKYCSKYTAVGPTYKFDGFGFVFPKGSPLVADVSRQVLNVTEGAKMLQFEKAWFGQTPSCPELTNSVSSNSIGLNSFWGLFLIAGIASFVALITCITTFLYENRDALINLNSPSSIWRKIKAMVTRFDDKDLSYDELKSQVYFQKYDIVVGNTTILDNRSLYGDFTLPYTEFGISMIVPIIDNRNFRGPYSHQVGTFFWFSFSTLVRKGVDVHNPTTCSLVEIFRWDFYVILWLAGFMLMKWRYT* 1773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8256196 8282552 + Vvi4g641 Vvi4g641 785420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g641 1772 Pfam Bacterial extracellular solute-binding proteins, family 3 350 672 IPR001638 -
Vvi4g641 1772 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 843 1654 - -
Vvi4g641 1772 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 772 - -
Vvi4g641 1772 CDD GluR_Plant 324 670 - -
Vvi4g641 1772 Gene3D - 325 444 - -
Vvi4g641 1772 Gene3D - 1242 1354 - -
Vvi4g641 1772 SUPERFAMILY Periplasmic binding protein-like II 1660 1713 - -
Vvi4g641 1772 CDD PBP1_GABAb_receptor_plant 1 293 IPR044440 -
Vvi4g641 1772 SUPERFAMILY Periplasmic binding protein-like I 7 317 IPR028082 -
Vvi4g641 1772 PANTHER GLUTAMATE RECEPTOR 2.9 1659 1711 - -
Vvi4g641 1772 PANTHER GLUTAMATE RECEPTOR 2.9 1710 1734 - -
Vvi4g641 1772 SUPERFAMILY Periplasmic binding protein-like II 301 672 - -
Vvi4g641 1772 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1659 1711 - -
Vvi4g641 1772 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1710 1734 - -
Vvi4g641 1772 PANTHER GLUTAMATE RECEPTOR 2.9 843 1654 - -
Vvi4g641 1772 PANTHER GLUTAMATE RECEPTOR 2.9 1 772 - -
Vvi4g641 1772 Gene3D - 445 587 - -
Vvi4g641 1772 Gene3D - 1355 1498 - -
Vvi4g641 1772 Pfam Bacterial extracellular solute-binding proteins, family 3 1267 1583 IPR001638 -
Vvi4g641 1772 Gene3D - 1645 1727 - -
Vvi4g641 1772 Gene3D - 43 208 - -
Vvi4g641 1772 Gene3D - 961 1126 - -
Vvi4g641 1772 Pfam Receptor family ligand binding region 2 273 IPR001828 -
Vvi4g641 1772 Pfam Receptor family ligand binding region 864 1190 IPR001828 -
Vvi4g641 1772 SUPERFAMILY Periplasmic binding protein-like I 843 1234 IPR028082 -
Vvi4g641 1772 SUPERFAMILY Periplasmic binding protein-like II 1218 1583 - -
Vvi4g641 1772 CDD PBP1_GABAb_receptor_plant 845 1210 IPR044440 -
Vvi4g641 1772 CDD GluR_Plant 1241 1581 - -
Vvi4g641 1772 Pfam Ligand-gated ion channel 1584 1614 IPR001320 GO:0015276|GO:0016020
Vvi4g641 1772 Pfam Ligand-gated ion channel 673 703 IPR001320 GO:0015276|GO:0016020
Vvi4g641 1772 Gene3D - 1135 1241 - -
Vvi4g641 1772 Gene3D - 209 324 - -
Vvi4g641 1772 SMART GluR_14 327 672 IPR001320 GO:0015276|GO:0016020
Vvi4g641 1772 SMART GluR_14 1244 1583 IPR001320 GO:0015276|GO:0016020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g641 K05387 - vvi:100241108 1605.11