Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g641 | ATGCAGGCCAACTTTGTGATTGGTCTCGGAGACAAGGCTCATGTGCCCATCATTTCATTTTCCGCAACTAGTCCTTCCCTTTCTTCGCTCCGGAGTCCATATTTTGTCCGAGCCACACTGAATGACTCAGCTCAAGTACCAGCTATAAGGGCAATTGTCCAAGCCTTTGAGTGGAGAGAAGTTGTGCTCATTTACGTGGACAACGAGTATGGAAATGGAGTAATACCATATCTTACTGATGCCTTGCAAGAGATTGACACCCGTATCTCCTACAGGAGCGTCATTCATCCATTAGCCACCGATGATCAAATCCTCGAAGAGCTTTACAAGTTGATGACAATGCCAACCAGAGTTTTCATTGTACACATGTTTACACCTCTAGGCCCACGGCTTTTCACCAGAGCGAATGAGATTGGAATGATGAAAGAAGGTTATGTTTGGATTCTAACTGATGGGTTAACTGATATCTTGAGTACTTTGGATCCATCTGTCATTGATTCAATGCAAGGAGTGTTGGGCGTGAAGCCTCATGTTCCAAGATCGAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGAAAATCCAACAAGAATATCCAACCAATGAAAGCTTTGAGCTGAACATTTTTGGACTCTGGGTTTATGATGCTGCTTCTGGGCTAGCCATGGCAGTTGAAAAACTTGGGCCAACAAACTTCAGCTTCCAAAAGTCTAATATTCACAGAAATTCAACCGATCTTGATACTGGCCTCAGTGGACACTTTCAAATTTTTAACGGCCAACTACGGTCATCAGCTTTTCAGGTAGTCAATGTGATCGGCAAAGGGGAAAGAGGGGTCGGATTTTGGACACCAGAGAATGGAACTGTAAGAAATTTACATTCTACTTCCAAGGCCAATCTAGGAACAATCGTATGGCCAGGAGAATCTCCCTCCGTTCCTAAAGGTTGGGTCCTTCCCACCAATAAGAAGAAGAAGAGAATAGGAGTACCAGTCACCAAGGGTTTTGGCGAATTCGTAAACGTGACACGAGATCCTAGCACTAACGCAACGGAGGTCACTGGATTTTCCATAGCAGTCTTCGATGCGGTGATGGCAGCATTACCATATGCTGTTCCTTATGAGTACAGTCCCTTCCAGACGCCCGATGGCGATCCAGCGGGTGATTACAACGATTTGATATATCAAGTATATCTCCAGAAGTATGAAGCTGTGGTGGGAGATACTACTATTCTAGCGAACAGGTCCTTGTATGTAGACTTTACACTACCGTACACAGAATCTGGGGTGTCAATGATCGTGCCCATCGTAGATAGAAGAGCAAAAAATGCATGGGTTTTCTTGAAGCCACTTACTTGGGACCTTTGGGTGACAACCTCTTGTTTCTTTGTATTCATTGGCTTTGTGATTTGGGTTCTTGAACATCGAATAAATAAAGATTTCAGAGGGCCTCGTTCACATCAAGTTGGCACTATCTTCTGGTTTTCATTCTCAACATTGGTGTTTGCTCAGAAGGAGAGAATTGTCAATAACTTGGCTCGGTTTGTGGTGATCATATGGCTTTTTGTGGTTCTGATTCTTACTCAAAGTTACACAGCCAGCTTGACTTCAATGTTGACAGTTCAACAGCTCAACCCAACCATCACCGATATAAATGAGCTCATAAAGAAAGGGGAGCGTGTAGGTTGCGAACATGGCTCTTTCGTTCATGAATTCTTGATCGAATCAATGAAATTTGATGAGTCCAAGCTTGTAATCTATAAGTCACCAGAAGAACTGGATGAGTTATTTTCAAAAGGTGGAATTGCTGCTGCATTTGATGAAATCCCTTACATGAAGATTTTCCTTGCAAAATATTGCTCCAAATACACTGCAGTCGGACCAACGTACAAGTTTGATGGGTTTGGATTTGTGTTTCCAAAAGGTTCACCCCTTGTAGCCGATGCTTCAAGGGAAGTCTTAAACGTGACAGAGGGAGCTAAAATGCTACAATTTGAGAAGGCATGGTTTGGGCAAACACCCAGTTGTCCAGAGCTCACCAACTCAGTTTCTTCAAACAGCATCGGCCTGAATAGCTTTTGGGGTCTATTCCTCATTGCTGGAATCGCTTCATTTGTAGCTCTCATCACATGCATCACCACATTCCTTTATGAAAATAGAGATGCCTTAATAAACTTGAATTCCCCATCTTCAATATGGAGAAAAATTAAAGCCATGGTGACACGCTTTGACGACAAAGATCTTAGGTCCCATACTTTTAGAGAAAGTGATCAACTTCAAGACGAGCAACATCAATGCCATGGATGCAGCTACACCAACTTCCCTCCAAGTCCATCGACCCTTTTGATCCCAACACACAATAATTCTGCTTTCTTCGGAGAACAAGGAACACCTTCTTCTGGACATGCTGATCCAGTCTGTCCAAATCGGCCGATGTCTCCCCATATAATGTTTGAATATGAGCTTGCTAATATAAATCACGAGCAAACAAGACAGCCTATGGTCATGTCACGGAACACAACAATACCGGTTAAAGTGGGAGTGGTTCTTGACATGGATACATGGCTGGCGAAGATGGGCTTGAGATGCATCTCCATGGCCCTCTCAGAGTTCTATGCCTCTCATGGGCACTACAAGACTAGGCTGGTTCTGGAAATCAGAGATTCCAAAAGAGATGTTGTGGGTGCAGCTGCAGCAGCTCTAGATTTATTACAAAATGAGGAAGTTCAAGCCATCATTGGACCAGCATCCTCCATGCAGGCCAACTTTGTGATTGGTCTCGGAGACAAGGCCCATGTGCCCATCATTTCATTTTCTGCAACTAGTCCTTCTCTTTCTTCGCTCCGGAGTCGATATTTTGTCCGAGCCACACTGAATGACTCAGCTCAAGTACCAGCTATAAGGGCAATCGTCCAAGCCTTTGGGTGGAGAGAAGTTGTGCTCATTTACGTGGACAACGAGTATGGAAATGGAGTGATACCATATCTTACTGATGCCTTGCAAGAGATTGACACCCGTATCTCCTACAGGAGCGTCATTCATCCATTAGCCACCGATGATCAAATCCTCGAAGAGCTTTACAAGTTGATGACAATGCCAACCAGAGTTTTCATTGTACACATGTTTACACCTCTAGGCCCACGGCTTTTCACCAGAGCGAATGAGATTGGAATGATGAAAGAAGGTTATGTTTGGATTCTAACTGATGGGTTAACTGATATCTTGAGTACTTTGGATCCATCTGTCATTGATTCAATGCAAGGAGTGTTGGGCGTGAAGCCTCATGTTCCAAGATCGAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGAAAATCCAACAAGAATATCCAACCAATGAAAGCTTTGAGCTGAACATTTTTGGACTCTGGGCTTATGATGCTGCTTCTGGGCAAGCCATGGCAGTTGAAAAACATGGGCCAACAAACTTCAGCTTCCAAAATCTTCTCCAATCACTATTAAGTACTAGATTTAAGGGCCTTAGTGGACACTTTCAAATTTTTAACAGTCAACTACGTTCATCAGCTTTTCAGGTAGTCAATGTGATCGGCAAAGGGGAAAGAGGGGTTGGATTTTGGACACCAGAGAATGGAACTGTAAGAAAGTTACATTCCACTTCCAAGGCCAATCTAGGAACAATCGTATGGCCAGGAGAATCACCCTCCGTTCCTAAAGGTTGGGTCCTTCCAACCAATGAGAAGAAGATGAGAATAGGAGTACCAGTCACCAACGGTTCTGGTAAATTCGTAAAGGTGACACGAGATCCTAGCACTAACGCGACCGAGGTCACTGGATTTTCCATTGCAGTCTTCGATGCAGTGATGGCAGCATTACCATATGCTGTTCCTTATGAGTACATTCCCTTCCAGACGCCTGATTACAACGATTTGATATATCAAGTATATCTCAAGAAGTATGATGCTGTGGTGGGAGATACTACTATTCTAGCGAACAGGTCCTTGTATGTAGACTTCACACTACCGTACACAGAATCTGGGGTGTCAATGATCGTGCCCATCATAGATAGAAGAAGAAAAAATGCATGGGTTTTCTTGAAGCCACTTACTTGGGACCTTTGGGTGACAACCTCTTGTTTCTTTGTATTCATTGGCTTTGTGATTTGGGTTCTTGAACATCGAGTAAATAAAGATTTTAGAGGGCCTCGTTCACATCAAGTTGGCACTATCTTCTGGTTTTCATTCTCAACATTGGTGTTTGCTCAGAAGGAGAGAATTGTCAGCAACTTGGCTCGGTTTGTGGTGATCATATGGCTTTTTGTGGTGCTGATTCTTACTCAAAGTTACACAGCCAGCTTGACTTCAATGTTGACAGTTCAACAGCTCAACCCAACCATCACCGATATAAATGAGCTCATAAAGAAAGGGGAGCGTGTAGGTTGCGAACATGGCTCTTTCGTTCATGAATTCTTGATCGAATCGATGAAATTTGATGAGTCCAACCTTGTAAACTATGAGTCAACAGAAGTACTGGATGAATTATTTTCAAAAGGTAGAATTGCTGCCGCATTTGATGAAATCCCTTACATTAAGCTTTTCCTTGCAAAATATTGCTCCAAATACACTGCAGTTGGACCAACATACAAGTTTGATGGGTTTGGATTTGTGTTTCCAAAGGGTTCACCCCTTGTAGCTGATGTTTCGAGGCAAGTCTTAAACGTGACCGAGGGAGCTAAAATGCTACAATTTGAGAAGGCATGGTTTGGGCAAACACCCAGTTGTCCAGAGCTCACCAACTCAGTTTCTTCAAACAGCATCGGCCTTAATAGCTTTTGGGGCCTATTCCTCATTGCTGGAATCGCTTCATTTGTAGCTCTCATCACATGCATCACCACATTCCTTTATGAAAATAGAGATGCATTAATAAACTTGAATTCCCCATCTTCCATATGGAGAAAAATTAAAGCCATGGTGACACGCTTTGACGACAAAGATCTTAGCTATGATGAATTGAAATCTCAAGTATATTTTCAGAAGTATGACATTGTGGTGGGAAATACTACTATTCTAGATAACAGGTCTTTGTATGGAGACTTTACACTACCTTACACCGAGTTTGGCATATCAATGATCGTGCCCATTATCGATAATAGAAATTTTAGAGGGCCTTATTCACATCAAGTTGGCACATTTTTCTGGTTCTCCTTCTCAACATTGGTTCGTAAGGGAGTAGACGTACACAACCCAACTACATGTTCTCTAGTGGAGATTTTTAGATGGGACTTCTATGTCATTTTATGGTTAGCCGGTTTTATGCTTATGAAATGGAGGTATACATGA | 5319 | 42.64 | MQANFVIGLGDKAHVPIISFSATSPSLSSLRSPYFVRATLNDSAQVPAIRAIVQAFEWREVVLIYVDNEYGNGVIPYLTDALQEIDTRISYRSVIHPLATDDQILEELYKLMTMPTRVFIVHMFTPLGPRLFTRANEIGMMKEGYVWILTDGLTDILSTLDPSVIDSMQGVLGVKPHVPRSKELESFKIRWKRKIQQEYPTNESFELNIFGLWVYDAASGLAMAVEKLGPTNFSFQKSNIHRNSTDLDTGLSGHFQIFNGQLRSSAFQVVNVIGKGERGVGFWTPENGTVRNLHSTSKANLGTIVWPGESPSVPKGWVLPTNKKKKRIGVPVTKGFGEFVNVTRDPSTNATEVTGFSIAVFDAVMAALPYAVPYEYSPFQTPDGDPAGDYNDLIYQVYLQKYEAVVGDTTILANRSLYVDFTLPYTESGVSMIVPIVDRRAKNAWVFLKPLTWDLWVTTSCFFVFIGFVIWVLEHRINKDFRGPRSHQVGTIFWFSFSTLVFAQKERIVNNLARFVVIIWLFVVLILTQSYTASLTSMLTVQQLNPTITDINELIKKGERVGCEHGSFVHEFLIESMKFDESKLVIYKSPEELDELFSKGGIAAAFDEIPYMKIFLAKYCSKYTAVGPTYKFDGFGFVFPKGSPLVADASREVLNVTEGAKMLQFEKAWFGQTPSCPELTNSVSSNSIGLNSFWGLFLIAGIASFVALITCITTFLYENRDALINLNSPSSIWRKIKAMVTRFDDKDLRSHTFRESDQLQDEQHQCHGCSYTNFPPSPSTLLIPTHNNSAFFGEQGTPSSGHADPVCPNRPMSPHIMFEYELANINHEQTRQPMVMSRNTTIPVKVGVVLDMDTWLAKMGLRCISMALSEFYASHGHYKTRLVLEIRDSKRDVVGAAAAALDLLQNEEVQAIIGPASSMQANFVIGLGDKAHVPIISFSATSPSLSSLRSRYFVRATLNDSAQVPAIRAIVQAFGWREVVLIYVDNEYGNGVIPYLTDALQEIDTRISYRSVIHPLATDDQILEELYKLMTMPTRVFIVHMFTPLGPRLFTRANEIGMMKEGYVWILTDGLTDILSTLDPSVIDSMQGVLGVKPHVPRSKELESFKIRWKRKIQQEYPTNESFELNIFGLWAYDAASGQAMAVEKHGPTNFSFQNLLQSLLSTRFKGLSGHFQIFNSQLRSSAFQVVNVIGKGERGVGFWTPENGTVRKLHSTSKANLGTIVWPGESPSVPKGWVLPTNEKKMRIGVPVTNGSGKFVKVTRDPSTNATEVTGFSIAVFDAVMAALPYAVPYEYIPFQTPDYNDLIYQVYLKKYDAVVGDTTILANRSLYVDFTLPYTESGVSMIVPIIDRRRKNAWVFLKPLTWDLWVTTSCFFVFIGFVIWVLEHRVNKDFRGPRSHQVGTIFWFSFSTLVFAQKERIVSNLARFVVIIWLFVVLILTQSYTASLTSMLTVQQLNPTITDINELIKKGERVGCEHGSFVHEFLIESMKFDESNLVNYESTEVLDELFSKGRIAAAFDEIPYIKLFLAKYCSKYTAVGPTYKFDGFGFVFPKGSPLVADVSRQVLNVTEGAKMLQFEKAWFGQTPSCPELTNSVSSNSIGLNSFWGLFLIAGIASFVALITCITTFLYENRDALINLNSPSSIWRKIKAMVTRFDDKDLSYDELKSQVYFQKYDIVVGNTTILDNRSLYGDFTLPYTEFGISMIVPIIDNRNFRGPYSHQVGTFFWFSFSTLVRKGVDVHNPTTCSLVEIFRWDFYVILWLAGFMLMKWRYT* | 1773 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 8256196 | 8282552 | + | Vvi4g641 | Vvi4g641 | 785420 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g641 | 1772 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 350 | 672 | IPR001638 | - | |
Vvi4g641 | 1772 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 843 | 1654 | - | - | |
Vvi4g641 | 1772 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 1 | 772 | - | - | |
Vvi4g641 | 1772 | CDD | GluR_Plant | 324 | 670 | - | - | |
Vvi4g641 | 1772 | Gene3D | - | 325 | 444 | - | - | |
Vvi4g641 | 1772 | Gene3D | - | 1242 | 1354 | - | - | |
Vvi4g641 | 1772 | SUPERFAMILY | Periplasmic binding protein-like II | 1660 | 1713 | - | - | |
Vvi4g641 | 1772 | CDD | PBP1_GABAb_receptor_plant | 1 | 293 | IPR044440 | - | |
Vvi4g641 | 1772 | SUPERFAMILY | Periplasmic binding protein-like I | 7 | 317 | IPR028082 | - | |
Vvi4g641 | 1772 | PANTHER | GLUTAMATE RECEPTOR 2.9 | 1659 | 1711 | - | - | |
Vvi4g641 | 1772 | PANTHER | GLUTAMATE RECEPTOR 2.9 | 1710 | 1734 | - | - | |
Vvi4g641 | 1772 | SUPERFAMILY | Periplasmic binding protein-like II | 301 | 672 | - | - | |
Vvi4g641 | 1772 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 1659 | 1711 | - | - | |
Vvi4g641 | 1772 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 1710 | 1734 | - | - | |
Vvi4g641 | 1772 | PANTHER | GLUTAMATE RECEPTOR 2.9 | 843 | 1654 | - | - | |
Vvi4g641 | 1772 | PANTHER | GLUTAMATE RECEPTOR 2.9 | 1 | 772 | - | - | |
Vvi4g641 | 1772 | Gene3D | - | 445 | 587 | - | - | |
Vvi4g641 | 1772 | Gene3D | - | 1355 | 1498 | - | - | |
Vvi4g641 | 1772 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 1267 | 1583 | IPR001638 | - | |
Vvi4g641 | 1772 | Gene3D | - | 1645 | 1727 | - | - | |
Vvi4g641 | 1772 | Gene3D | - | 43 | 208 | - | - | |
Vvi4g641 | 1772 | Gene3D | - | 961 | 1126 | - | - | |
Vvi4g641 | 1772 | Pfam | Receptor family ligand binding region | 2 | 273 | IPR001828 | - | |
Vvi4g641 | 1772 | Pfam | Receptor family ligand binding region | 864 | 1190 | IPR001828 | - | |
Vvi4g641 | 1772 | SUPERFAMILY | Periplasmic binding protein-like I | 843 | 1234 | IPR028082 | - | |
Vvi4g641 | 1772 | SUPERFAMILY | Periplasmic binding protein-like II | 1218 | 1583 | - | - | |
Vvi4g641 | 1772 | CDD | PBP1_GABAb_receptor_plant | 845 | 1210 | IPR044440 | - | |
Vvi4g641 | 1772 | CDD | GluR_Plant | 1241 | 1581 | - | - | |
Vvi4g641 | 1772 | Pfam | Ligand-gated ion channel | 1584 | 1614 | IPR001320 | GO:0015276|GO:0016020 | |
Vvi4g641 | 1772 | Pfam | Ligand-gated ion channel | 673 | 703 | IPR001320 | GO:0015276|GO:0016020 | |
Vvi4g641 | 1772 | Gene3D | - | 1135 | 1241 | - | - | |
Vvi4g641 | 1772 | Gene3D | - | 209 | 324 | - | - | |
Vvi4g641 | 1772 | SMART | GluR_14 | 327 | 672 | IPR001320 | GO:0015276|GO:0016020 | |
Vvi4g641 | 1772 | SMART | GluR_14 | 1244 | 1583 | IPR001320 | GO:0015276|GO:0016020 |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g641 | K05387 | - | vvi:100241108 | 1605.11 |