Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g643 | ATGGGCTTGAGCTGCATCTCCATGGCCCTCTCAGACTTCTATGCCTCTCATGGGCACTACAAGACTAGGCTGGCTCTGGAAATCAGAGATTCCAAAAGAGATGTTGTGGGTGCAGCTGCAGCAGCTCTAGATTTATTACAAAATGAGGAAGTTCAAGTCATCATAGGACCAGCAACCTCCATGCAGGCCAATTTTGTGATTTATCTCGGAGACAAGGCTCATGTGCCCATCATTTCATTTTCTGCAACTAGTCCTTCTCTTTCTTCGCTCCAGAGTCGATATTTTGTCCGAGCCACATTGAATGACTCAGCTCAAGTACCAGCCATAAGAGCTATTGTCCAAGCCTTTGGGTGGAGACAAGTTCTGCTCATTTACTTGGACAACGAGTACGGAAATGGAGTTCTACCTTATCTTACTGATCCCTTGCAAGAGATTGACACCCGTATCTCCTACAGGAGCGTCATTCATCCATTAGCCACTGATGATCAAATCCTCGAAGAGCTTTACAAGTTGATGACAATGTCAACCAGAGAGTTTTCATTTACCTTGGATGACTCGGTCATTGATTCGATGCAAGGAGTGTTGGGTGTAAAGCCTCATGTTCCAAGATCGAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGAAAATCCAACAAGAATATCCAACCAATGAAAGCTTTGAGCTGAACATTTTTGGACTCTGGGCTTATGATGCTGCTTCTGGGCTAGCCATGGCAATTGAAAAACTTGGGGCAACAAACTTCAGCTTCCAAAAGTCTAATACTTCCAGAAATTCAACTGATCTTGATACTGTAGGAGTCTCCCAAATTGGTCCAAATCTTCTCCAATCACTATTAAGTACTAGATTTAAGGGCCTTAGTGGACACTTTCAAATTTTTAACAGGCAACTACGGGAAAGAGGGGTAGGATTTTGGACTCCGAAAAATGGAATTATAAGAAGACTGAATTTCACAAACACATATTCCACTTCTAAGGACAACCTAGGAATAATTGTATGGCCTGGAGAACCTACTTATGTCCCTAAAGGTTGGGTGCTTCCAGTAAATGAGAAGTTGAAAATAGGAGTTCCAGTGAATGCTTTTAGTGAATTTGTAAATGTGACATGGGATCCCAAAACTAATGCCACAAAGGTCACTGGGTACTGCATAGATGTATTTGATGAGGTGATGCGTTCGCTACCATATGCTGTTCCTTACGAGTACATTCCCTTCGGAACCCCTGATGGCAAGTCTGCCGGTAGCTACAATGATTTGATATATCAAGTGTTTCTAAAGAATTATGATGCCGTGGTGGGAGATACTACAATTGTAGCGAACAGGTCCAAGTATGTAGATTTTACATTACCCTACACTGAATCTGGCGTATCAATGATCGTGCCCATCAAAGACAACAAAAGCAAAAGTGCATGGATTTTCTTGAAGCCATTGACTTGGGACCTCTGGGTGACTAGTGCGTGTTTCTTTGTTTTCATCGGCTTTGTAATTTGGGTTCTTGAACATCGAATAAATGAAGATTTCAGGGGCCCTCATTCACATCAAGCAGGCACCATCTTCTGGTTCTCCTTCACAACTATGATGTTTGCACAGAAGGAGAGAATTATGAGCAACTTGGCGCGGTTTGTGATGATCATATGGTTCTTTGTGGTGCTCATTCTTACTCAAAGTTACACCGCCAGCTTGACATCAATGTTAACTGTCCAACAGCTCCAGCCAACCGTTACAGACATAAAAGAGCTACAAGCGAAACGGGAGTATGTAGGTTACCAACAAGACTCTTTCGTTCTCGAATTCCTGAAAAGGATGAAGTTTGACGAATCCAAGTTAAGGATCTATAGTTCTCCAGAAAAATTAGCTGAACTATTCTCGAAAGGAAGTGCAAATGGAGGTATTGCTGCTGCCTTTGACGAGATACCTTACATGAAGCTCTTCATTGCACAGCATTGCTCGAAATATACCATGGTTCAACCAATATACAAATTTGATGGGTTCGGATTTGCCTTCCCAATAGGTTCTCCTCTGGTACCCGATGTTTCAAGGGCAGTCTTAATTGTGACTGAGGGAAATGAAATGGTAAGGATTGAGAAAAAGTGGTTTAGCGAAAAAACTAGTTGTTCAGATGATAATGGAAGCTTACTTTCTTCTAACAATATCAGCCTTGATAGCTTTTGGGGCCTTTTCCTCATTGCTGGAGTCACTTCATCTTTAGCTCTGATCATAGGTATTGCCATGTTCCTGCATAAACATAGAGTTGTAGTAATGGGCAAAGATTCGGCATCGACAAAGATTAAGACCTTGATGACACTTTTTGATCAAAAAGACCTCAGCTCTCATACTTTTAGAATAGCTGACCAGCCATACAGCGGTAGCAATGAGCCTATAGCTGCAGTTGGAGCCTCTCCCTCAGTGACTAACAGCTCGCCAAGGCCATCAACCTTTTCCAACCAAACCAATAATGATATTCCCCTCTCCGGAGAACAAGGAACCTCTTCTTAA | 2517 | 42.19 | MGLSCISMALSDFYASHGHYKTRLALEIRDSKRDVVGAAAAALDLLQNEEVQVIIGPATSMQANFVIYLGDKAHVPIISFSATSPSLSSLQSRYFVRATLNDSAQVPAIRAIVQAFGWRQVLLIYLDNEYGNGVLPYLTDPLQEIDTRISYRSVIHPLATDDQILEELYKLMTMSTREFSFTLDDSVIDSMQGVLGVKPHVPRSKELESFKIRWKRKIQQEYPTNESFELNIFGLWAYDAASGLAMAIEKLGATNFSFQKSNTSRNSTDLDTVGVSQIGPNLLQSLLSTRFKGLSGHFQIFNRQLRERGVGFWTPKNGIIRRLNFTNTYSTSKDNLGIIVWPGEPTYVPKGWVLPVNEKLKIGVPVNAFSEFVNVTWDPKTNATKVTGYCIDVFDEVMRSLPYAVPYEYIPFGTPDGKSAGSYNDLIYQVFLKNYDAVVGDTTIVANRSKYVDFTLPYTESGVSMIVPIKDNKSKSAWIFLKPLTWDLWVTSACFFVFIGFVIWVLEHRINEDFRGPHSHQAGTIFWFSFTTMMFAQKERIMSNLARFVMIIWFFVVLILTQSYTASLTSMLTVQQLQPTVTDIKELQAKREYVGYQQDSFVLEFLKRMKFDESKLRIYSSPEKLAELFSKGSANGGIAAAFDEIPYMKLFIAQHCSKYTMVQPIYKFDGFGFAFPIGSPLVPDVSRAVLIVTEGNEMVRIEKKWFSEKTSCSDDNGSLLSSNNISLDSFWGLFLIAGVTSSLALIIGIAMFLHKHRVVVMGKDSASTKIKTLMTLFDQKDLSSHTFRIADQPYSGSNEPIAAVGASPSVTNSSPRPSTFSNQTNNDIPLSGEQGTSS* | 839 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 8358355 | 8364248 | + | Vvi4g643 | Vvi4g643 | 785422 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g643 | 838 | Pfam | Ligand-gated ion channel | 708 | 739 | IPR001320 | GO:0015276|GO:0016020 | |
Vvi4g643 | 838 | CDD | PBP1_GABAb_receptor_plant | 1 | 323 | IPR044440 | - | |
Vvi4g643 | 838 | Pfam | Receptor family ligand binding region | 5 | 176 | IPR001828 | - | |
Vvi4g643 | 838 | Pfam | Receptor family ligand binding region | 188 | 300 | IPR001828 | - | |
Vvi4g643 | 838 | MobiDBLite | consensus disorder prediction | 798 | 838 | - | - | |
Vvi4g643 | 838 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 1 | 180 | - | - | |
Vvi4g643 | 838 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 183 | 799 | - | - | |
Vvi4g643 | 838 | Gene3D | - | 650 | 714 | - | - | |
Vvi4g643 | 838 | PANTHER | GLUTAMATE RECEPTOR 2.9 | 1 | 180 | - | - | |
Vvi4g643 | 838 | PANTHER | GLUTAMATE RECEPTOR 2.9 | 183 | 799 | - | - | |
Vvi4g643 | 838 | PIRSF | IGluLR_plant | 179 | 835 | IPR017103 | - | |
Vvi4g643 | 838 | PIRSF | IGluLR_plant | 1 | 182 | IPR017103 | - | |
Vvi4g643 | 838 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 382 | 707 | IPR001638 | - | |
Vvi4g643 | 838 | Gene3D | - | 4 | 100 | - | - | |
Vvi4g643 | 838 | CDD | GluR_Plant | 359 | 706 | - | - | |
Vvi4g643 | 838 | Gene3D | - | 101 | 177 | - | - | |
Vvi4g643 | 838 | SUPERFAMILY | Periplasmic binding protein-like II | 338 | 708 | - | - | |
Vvi4g643 | 838 | Gene3D | - | 201 | 308 | - | - | |
Vvi4g643 | 838 | Gene3D | - | 478 | 618 | - | - | |
Vvi4g643 | 838 | SUPERFAMILY | Periplasmic binding protein-like I | 6 | 352 | IPR028082 | - | |
Vvi4g643 | 838 | SMART | GluR_14 | 361 | 708 | IPR001320 | GO:0015276|GO:0016020 | |
Vvi4g643 | 838 | MobiDBLite | consensus disorder prediction | 802 | 838 | - | - | |
Vvi4g643 | 838 | Gene3D | - | 356 | 477 | - | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g643 | K05387 | - | vvi:100855255 | 1356.27 |