Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g643 ATGGGCTTGAGCTGCATCTCCATGGCCCTCTCAGACTTCTATGCCTCTCATGGGCACTACAAGACTAGGCTGGCTCTGGAAATCAGAGATTCCAAAAGAGATGTTGTGGGTGCAGCTGCAGCAGCTCTAGATTTATTACAAAATGAGGAAGTTCAAGTCATCATAGGACCAGCAACCTCCATGCAGGCCAATTTTGTGATTTATCTCGGAGACAAGGCTCATGTGCCCATCATTTCATTTTCTGCAACTAGTCCTTCTCTTTCTTCGCTCCAGAGTCGATATTTTGTCCGAGCCACATTGAATGACTCAGCTCAAGTACCAGCCATAAGAGCTATTGTCCAAGCCTTTGGGTGGAGACAAGTTCTGCTCATTTACTTGGACAACGAGTACGGAAATGGAGTTCTACCTTATCTTACTGATCCCTTGCAAGAGATTGACACCCGTATCTCCTACAGGAGCGTCATTCATCCATTAGCCACTGATGATCAAATCCTCGAAGAGCTTTACAAGTTGATGACAATGTCAACCAGAGAGTTTTCATTTACCTTGGATGACTCGGTCATTGATTCGATGCAAGGAGTGTTGGGTGTAAAGCCTCATGTTCCAAGATCGAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGAAAATCCAACAAGAATATCCAACCAATGAAAGCTTTGAGCTGAACATTTTTGGACTCTGGGCTTATGATGCTGCTTCTGGGCTAGCCATGGCAATTGAAAAACTTGGGGCAACAAACTTCAGCTTCCAAAAGTCTAATACTTCCAGAAATTCAACTGATCTTGATACTGTAGGAGTCTCCCAAATTGGTCCAAATCTTCTCCAATCACTATTAAGTACTAGATTTAAGGGCCTTAGTGGACACTTTCAAATTTTTAACAGGCAACTACGGGAAAGAGGGGTAGGATTTTGGACTCCGAAAAATGGAATTATAAGAAGACTGAATTTCACAAACACATATTCCACTTCTAAGGACAACCTAGGAATAATTGTATGGCCTGGAGAACCTACTTATGTCCCTAAAGGTTGGGTGCTTCCAGTAAATGAGAAGTTGAAAATAGGAGTTCCAGTGAATGCTTTTAGTGAATTTGTAAATGTGACATGGGATCCCAAAACTAATGCCACAAAGGTCACTGGGTACTGCATAGATGTATTTGATGAGGTGATGCGTTCGCTACCATATGCTGTTCCTTACGAGTACATTCCCTTCGGAACCCCTGATGGCAAGTCTGCCGGTAGCTACAATGATTTGATATATCAAGTGTTTCTAAAGAATTATGATGCCGTGGTGGGAGATACTACAATTGTAGCGAACAGGTCCAAGTATGTAGATTTTACATTACCCTACACTGAATCTGGCGTATCAATGATCGTGCCCATCAAAGACAACAAAAGCAAAAGTGCATGGATTTTCTTGAAGCCATTGACTTGGGACCTCTGGGTGACTAGTGCGTGTTTCTTTGTTTTCATCGGCTTTGTAATTTGGGTTCTTGAACATCGAATAAATGAAGATTTCAGGGGCCCTCATTCACATCAAGCAGGCACCATCTTCTGGTTCTCCTTCACAACTATGATGTTTGCACAGAAGGAGAGAATTATGAGCAACTTGGCGCGGTTTGTGATGATCATATGGTTCTTTGTGGTGCTCATTCTTACTCAAAGTTACACCGCCAGCTTGACATCAATGTTAACTGTCCAACAGCTCCAGCCAACCGTTACAGACATAAAAGAGCTACAAGCGAAACGGGAGTATGTAGGTTACCAACAAGACTCTTTCGTTCTCGAATTCCTGAAAAGGATGAAGTTTGACGAATCCAAGTTAAGGATCTATAGTTCTCCAGAAAAATTAGCTGAACTATTCTCGAAAGGAAGTGCAAATGGAGGTATTGCTGCTGCCTTTGACGAGATACCTTACATGAAGCTCTTCATTGCACAGCATTGCTCGAAATATACCATGGTTCAACCAATATACAAATTTGATGGGTTCGGATTTGCCTTCCCAATAGGTTCTCCTCTGGTACCCGATGTTTCAAGGGCAGTCTTAATTGTGACTGAGGGAAATGAAATGGTAAGGATTGAGAAAAAGTGGTTTAGCGAAAAAACTAGTTGTTCAGATGATAATGGAAGCTTACTTTCTTCTAACAATATCAGCCTTGATAGCTTTTGGGGCCTTTTCCTCATTGCTGGAGTCACTTCATCTTTAGCTCTGATCATAGGTATTGCCATGTTCCTGCATAAACATAGAGTTGTAGTAATGGGCAAAGATTCGGCATCGACAAAGATTAAGACCTTGATGACACTTTTTGATCAAAAAGACCTCAGCTCTCATACTTTTAGAATAGCTGACCAGCCATACAGCGGTAGCAATGAGCCTATAGCTGCAGTTGGAGCCTCTCCCTCAGTGACTAACAGCTCGCCAAGGCCATCAACCTTTTCCAACCAAACCAATAATGATATTCCCCTCTCCGGAGAACAAGGAACCTCTTCTTAA 2517 42.19 MGLSCISMALSDFYASHGHYKTRLALEIRDSKRDVVGAAAAALDLLQNEEVQVIIGPATSMQANFVIYLGDKAHVPIISFSATSPSLSSLQSRYFVRATLNDSAQVPAIRAIVQAFGWRQVLLIYLDNEYGNGVLPYLTDPLQEIDTRISYRSVIHPLATDDQILEELYKLMTMSTREFSFTLDDSVIDSMQGVLGVKPHVPRSKELESFKIRWKRKIQQEYPTNESFELNIFGLWAYDAASGLAMAIEKLGATNFSFQKSNTSRNSTDLDTVGVSQIGPNLLQSLLSTRFKGLSGHFQIFNRQLRERGVGFWTPKNGIIRRLNFTNTYSTSKDNLGIIVWPGEPTYVPKGWVLPVNEKLKIGVPVNAFSEFVNVTWDPKTNATKVTGYCIDVFDEVMRSLPYAVPYEYIPFGTPDGKSAGSYNDLIYQVFLKNYDAVVGDTTIVANRSKYVDFTLPYTESGVSMIVPIKDNKSKSAWIFLKPLTWDLWVTSACFFVFIGFVIWVLEHRINEDFRGPHSHQAGTIFWFSFTTMMFAQKERIMSNLARFVMIIWFFVVLILTQSYTASLTSMLTVQQLQPTVTDIKELQAKREYVGYQQDSFVLEFLKRMKFDESKLRIYSSPEKLAELFSKGSANGGIAAAFDEIPYMKLFIAQHCSKYTMVQPIYKFDGFGFAFPIGSPLVPDVSRAVLIVTEGNEMVRIEKKWFSEKTSCSDDNGSLLSSNNISLDSFWGLFLIAGVTSSLALIIGIAMFLHKHRVVVMGKDSASTKIKTLMTLFDQKDLSSHTFRIADQPYSGSNEPIAAVGASPSVTNSSPRPSTFSNQTNNDIPLSGEQGTSS* 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8358355 8364248 + Vvi4g643 Vvi4g643 785422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g643 838 Pfam Ligand-gated ion channel 708 739 IPR001320 GO:0015276|GO:0016020
Vvi4g643 838 CDD PBP1_GABAb_receptor_plant 1 323 IPR044440 -
Vvi4g643 838 Pfam Receptor family ligand binding region 5 176 IPR001828 -
Vvi4g643 838 Pfam Receptor family ligand binding region 188 300 IPR001828 -
Vvi4g643 838 MobiDBLite consensus disorder prediction 798 838 - -
Vvi4g643 838 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 180 - -
Vvi4g643 838 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 183 799 - -
Vvi4g643 838 Gene3D - 650 714 - -
Vvi4g643 838 PANTHER GLUTAMATE RECEPTOR 2.9 1 180 - -
Vvi4g643 838 PANTHER GLUTAMATE RECEPTOR 2.9 183 799 - -
Vvi4g643 838 PIRSF IGluLR_plant 179 835 IPR017103 -
Vvi4g643 838 PIRSF IGluLR_plant 1 182 IPR017103 -
Vvi4g643 838 Pfam Bacterial extracellular solute-binding proteins, family 3 382 707 IPR001638 -
Vvi4g643 838 Gene3D - 4 100 - -
Vvi4g643 838 CDD GluR_Plant 359 706 - -
Vvi4g643 838 Gene3D - 101 177 - -
Vvi4g643 838 SUPERFAMILY Periplasmic binding protein-like II 338 708 - -
Vvi4g643 838 Gene3D - 201 308 - -
Vvi4g643 838 Gene3D - 478 618 - -
Vvi4g643 838 SUPERFAMILY Periplasmic binding protein-like I 6 352 IPR028082 -
Vvi4g643 838 SMART GluR_14 361 708 IPR001320 GO:0015276|GO:0016020
Vvi4g643 838 MobiDBLite consensus disorder prediction 802 838 - -
Vvi4g643 838 Gene3D - 356 477 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g643 K05387 - vvi:100855255 1356.27