Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g647 ATGGTAAAATATGTCCTAGCTTCCTTGTTGCTTCAAGGATTGACTGTGTCTTCGATCTTCATACCCGGTGGAGGTGCTTACCTCTATACCATACAGTCAAACCCAGTCCCCAGCTTCCGCCATGACATCTGTATGTTAGTTGGCAGCAAATATTCAGAGGTGTTTCCCTGCATTTCCTTAATTTTGGCTTTGATGAAGAGTAGGCGCTTAGGGCAGACTGAGTCAACAATAGGAAAATTGATTTCTTTTTATTTTTCTTTTCTTCCAACGAGTTCAAAGATGAGAAGGCACCCTACCCAACTCCTTGCCTCTCTCTTGTTCTTTCTCTTTCCCACGATTTTCTTCATAGAAAAGGGCATGGCACAGAACACAACAATACCAGTTAAAGTGGGAGTGGTTCTGGACTTGGATACATGGGTTGGGAAGATGGGGTTGAGCTGCATCTCCATGGCCCTCTCAGACTTCTATGCCTCTCATGGCCACTACAAAACCAGGGTGGTTACAAAAGTCAGAGATTCCAAAAGAGATGTTGTTGGTGCAGCTGCAGCAGCTGTTGACCTCTTGCAAAATGAGGAAGTGGAAGCCATAATAGGGCCGGGATCATCGATGCAGGCCAACTTCATGATCGGTCTTGGAAGTAAAGCTCGGGTGCCCATCATTTCATTTTCTGCAACAAGTCCCTCTCTTTCTTCGCTTCAGAGTCAATATTTTATCCGAGCTACCCTAAATGACTCAGCTCAAGTACCGGCAATTAGGGCAATAGTCCAGACCTTTGGATGGAGAGAAGTTGTGCTTATTTACGTTGACAACGAGTATGGCAATGGAGTCATACCGTCTCTGACTAGTGCCTTCCTGGAGGTGGACGCCCATGTGACCTACTGGAGCCCCATTCATCCATCAGTAACTGACGATCAACTTGTTGAAGAACTTCACAAGTTGATGAGGATACCAACTAGAGTTTTCATTGTGCATATGCTTACGCCTCTTGGCTACCGGCTTTTTACCAAAGCAAATGAGGCTGGAATGATGGAAGAAGGCTATGTTTGGATACTAACTGATGGGATAACCGACTTCTTGAGTACTTTGAACGCTTCAGCCATTGATTCGATGCAAGGGGTGTTGGGCGTCAAGCCCCATGTTCCAAGAACCAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAAGAAAATACAAGAAGAATATCCAACCAATGAAATCTCTGAGCTGAATATTTTTGGACTCTGGGCCTACGATGCTGCTTGTGCACTAGCCATGGCAAGTATTAGAGTTTCCCCGGTTGGTCCAAATATTCTCCATTCACTATTAAGTACTCGATTTAGAGGCCTTAGCGGAGATTTTCAAATTGGAGATGGGCAACTACGCACATCAGCTTTCCATATAGTTAATGTGATTGGTGAAGGGGAAAGAGGGGTTGGATTTTGGACACCAGAGAATGGAATTGTAAGAAGATCGAATTCTACTTCTAAGGCCAATCTAAGAGCCATTACATGGCCAGGAGAATCTCCTTCTGTTCCTAAAGGTTGGGTGCTTCCTACCAACGGAAAGAAGTTGAAGATAGGAGTTCCAGTGAAGGAGGGTTTTAGTGAATTTGTGAAGGTGACGCGAGATCCTATCACTAATACAACAAAGATCACTGGTTACTCTATCGCTATCTTCGAAAACGTAATGGAAACATTACCATATGCTGTTCCTTACGAATACGTTCCCTTCGAGACACCTGATGGAAAGGCTGCTGGTAGCTATGATGAATTGATATCTCAAGTATATTTTCAGAAGTATGACGCTGTGGTGGGAGATATTACTATTCTAGCGAACAGGTCCTTCTATGTAGACTTTACACTACCTTACACCGAGTCTGGCGTATCAATGATCGTGCCCATCATCAATAACAGAAGTAAAAATGCATGGGTCTTTCTGAAGCCATTAACTTGGGACCTTTGGGTGACAAGCGCTTGTTTCTTTGTCTTCATTGGCTTTGTGATTTGGACTCTTGAACATCGAATAAATGAAGATTTCAGAGGGCCTCGTTCACATCAAGTTGGCACAATCTTCTGGTTCTCCTTCTCAACATTGGTGTTTGCTCAGAGGGAGAGAATTGTCAGCAACTTGGCTCGGTTCGTGATGATCATATGGTTTTTTGTGGTGACTGCCTCTCCAGCCACAAACTACCCGCCGAGTCCATCAAGCCTTTCAGTCCAAACACAGAGTAATTTTGCTTTCTCCAGACCTGTTACCGAATATGGTGATCCAATGAGTCCAAATGGGCAGACATCTCCTGAGACAGCATTTGGTATCGAGCTTGCCAATTGA 2331 44.06 MVKYVLASLLLQGLTVSSIFIPGGGAYLYTIQSNPVPSFRHDICMLVGSKYSEVFPCISLILALMKSRRLGQTESTIGKLISFYFSFLPTSSKMRRHPTQLLASLLFFLFPTIFFIEKGMAQNTTIPVKVGVVLDLDTWVGKMGLSCISMALSDFYASHGHYKTRVVTKVRDSKRDVVGAAAAAVDLLQNEEVEAIIGPGSSMQANFMIGLGSKARVPIISFSATSPSLSSLQSQYFIRATLNDSAQVPAIRAIVQTFGWREVVLIYVDNEYGNGVIPSLTSAFLEVDAHVTYWSPIHPSVTDDQLVEELHKLMRIPTRVFIVHMLTPLGYRLFTKANEAGMMEEGYVWILTDGITDFLSTLNASAIDSMQGVLGVKPHVPRTKELESFKIRWKKKIQEEYPTNEISELNIFGLWAYDAACALAMASIRVSPVGPNILHSLLSTRFRGLSGDFQIGDGQLRTSAFHIVNVIGEGERGVGFWTPENGIVRRSNSTSKANLRAITWPGESPSVPKGWVLPTNGKKLKIGVPVKEGFSEFVKVTRDPITNTTKITGYSIAIFENVMETLPYAVPYEYVPFETPDGKAAGSYDELISQVYFQKYDAVVGDITILANRSFYVDFTLPYTESGVSMIVPIINNRSKNAWVFLKPLTWDLWVTSACFFVFIGFVIWTLEHRINEDFRGPRSHQVGTIFWFSFSTLVFAQRERIVSNLARFVMIIWFFVVTASPATNYPPSPSSLSVQTQSNFAFSRPVTEYGDPMSPNGQTSPETAFGIELAN* 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8473897 8482145 - Vvi4g647 Vvi4g647 785426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g647 776 Pfam Receptor family ligand binding region 147 471 IPR001828 -
Vvi4g647 776 CDD PBP1_GABAb_receptor_plant 129 490 IPR044440 -
Vvi4g647 776 SMART GluR_14 523 721 IPR001320 GO:0015276|GO:0016020
Vvi4g647 776 Pfam Ligand-gated ion channel 651 722 IPR001320 GO:0015276|GO:0016020
Vvi4g647 776 SUPERFAMILY Periplasmic binding protein-like II 499 659 - -
Vvi4g647 776 SUPERFAMILY Periplasmic binding protein-like I 127 515 IPR028082 -
Vvi4g647 776 PANTHER GLUTAMATE RECEPTOR 2.9 127 722 - -
Vvi4g647 776 Gene3D - 245 409 - -
Vvi4g647 776 Gene3D - 523 642 - -
Vvi4g647 776 Gene3D - 433 522 - -
Vvi4g647 776 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 127 722 - -
Vvi4g647 776 Pfam Bacterial extracellular solute-binding proteins, family 3 548 634 IPR001638 -
Vvi4g647 776 Gene3D - 643 725 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g647 K05387 - vvi:100243515 1340.48