Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g648 | ATGGATACCTGGCTAGGGAAGATGGGATTGAGCTGCATCTCCATGGCACTCTCAGACTTCTATGCCTCTCATGGGCACTACAAGACTAGGCTGGTTCCGGAAATTAGAAACTCCAAACGAGATGTCGTTGGTGCAGCTGCAGCTGCTCTAGACTTGTTGCAAAATGAGGACGTTCAAGCCATCATAGGACCAGCATCTTCCATGCAGGCCAACTTCCTGATTGGTCTCGGAGACAAAACTCATGTGCCCATCATTTCATTTTCTGCAACAAGCCCTTCTCTTTCTTCACTTCAGAGTCAATATTTTATCCGAGCCACCCTAAATGACTCAGCTCAAGTACCAGCAATAAGGGCAATTGTCCAAGCCTTTGGATGGAGAGAAGTTGTGCTTATTTACGTGGGCAATGAGTATGGGAATGGCGTTATACCATATCTTACCGATGCCTTGCAAGAGATTGACACCCGTATCGCCTACAGGTACGTCATTCCTCCATTAGCCACTGATGATCAAATTGTCAAAGAACTTTACAAGCTGATGACAATGTCAACCAGAGTTTTCATTGTACACATGTCTACACCTCTTGGGCCTCGGCTTTTCACCAAAGCAAATAAGGTGGGAATGATGGATGAAGGCTATGTTTGGATACTGACTGATGGGATGGCTGATATGTTGAGTACTTTGGATGAGTCGGTCATTGATTCGATGCAAGGAGTGTTGGGTGTAAAGCCTCATGTTCCTAGATCTAAAGAGCTTAAAAGTTTTGAAATCAGATGGAAAAGAAAAATCCAGCAAGAATATCCAACCAATGAAAGCTATGAGTTGAACATATTTGGCCTCTGGGCTTATGATGCTGCTTCTGGAAATTCAACCGGTCTTGGGACTATACAAGTCTCCAAAACTGGTCCATATCTTCTCCAATCACTTCTAAGTACTAAATTCAGAGGCCTCAGTGGAGATTTTCAAATTGTTGATGGGCAACTACGTTCATCAGCCTTTCAGATAGTCAATGTGATCGGTAAAGGGGAAAGAGGGGTGGCACTTTGGACACCGGAGAATGGGATTGTAAGAAATTCAAATCCTACTTATAAGGCTGATCTAAGAACCATCATATGGCCGGGAGACTCTCCTTCGGTTCCTAAAGGTTGGGTGCTTCCCACAAACGGCATGAAGTCCTTGAGAATAGGAGTACCAGTGAAAGAGGGGTTTAGTGAATTTGTAAAGGTGACACGAGATCCTATCACTAACATTACAAAGGTCACTGGATACTGCATAGCTATCTTCGATGCTGTGATGGCAGCATTGCCATATTCTGTTCCTTACGAGTACATTCCGTTCGAGACCTCTGATGGCAAGCCTGCTGGCAATTACAATGATTTGATATATCAAGTATATCTTCAGAAGTATGATGCTGTTGTGGGAGATACTACTATCGTAGCGAACAGGTCCTTATATGTAGACTTTACGCTGCCTTACACGGAATCTGGGGTGTCAATGATTGTGCCCGTCATAGATAAAAGAAGTAAAAATGCATGGGTTTTCTTGAAGCCACTGACTTGGGACCTTTGGGTGACAAGCGCTTGTTTCTTTGTCTTCATTGGTTTTGTGATTTGGGTTCTGGAACATCGTATAAATGAAGATTTTAGAGGACCTCGTTCAAATCAAGTTGGCACGATCCTCTGGTTTTCATTCTCGACCATGGTGTTTGCCCAGAAGGAGAGAGTTGTGAGTAACTTGGCTCGGTTCGTGGTGATCATATGGTTTTTCGTGGTGCTGATTCTTACTCAAAGTTATACTGCCAGCTTGACTTCAATGTTAACAGTTCAACAGCTGAAGCCGACTATCACAGACATAAATGAGCTCATAAAGAATGGGGAGCGTGTGGGTTACCAGACGGGCTCTTTTGTTCATGAATTCTTGAAGTGGATGAAATTTGATGAAACCAAGCTTGTAATCTATGAGTCTCCAGAAGGGCTGGATGAATTATTTTCAAACAGGAGTTCAGATGGTGGAATTGCTGCTGCTTTTGAGGAAATCCCTTACATGAAGCTTTTCCTTGCAAAATATTGCTCCAAATACACTGCAGTTCAACCAACTTACAAGTTTGATGGGTTTGGATTTGTCTTCCCAAAGCGATCACCTCTCATACCTGATGTTTCAATGCAAGTCTTAAATGTGACTGAGGGAGCTAAAATGGTTCAATTTGAGAAAGCATGGTTTGGGCAGACACCCAGTTGTCCAGAGCTCACCAGCTCAGTTTCTTCAAACAGCATCGGCCTTAATAGCTTTTGGGGCCTATTCCTCATTGCTGGAGTCGCTTCATTTGTAGCTCTCATCATATGCATCACCACTTTCTTGTATGAAAATAGAGATACTTTAGTACACTTGGATCCCCCAGCTTCAGTATGGAGAAAAATTAAAGCCATGGCGACACGCTTTGATCACAAAGACCTCAGCTCGCATACTTTCAGGAAAAGTGAAATGGTAGATAGAAAGATGGCCATGTCACAGAACACAACAATACCAGTTAAAGTGGGAGTGGTTCTTGACATGGATACATGGCTGGGTAAGATGGGTTTGAGCTGCATCACCATGGCCCTCTCAGACTTCTATGCCTCTCATGGGCACTACAAGACTAGGCTGGTTCTGGAAATCAGAGATTCCAAAAGAGATGTTGTGGGTGCAGCTGCAGCAGCTCTAGATTTATTACAAAATGAGGAAGTTCAAGCCATCATAGGACCAGCATCCTCCATGCAGGCCAACTTTGTGATTGGCCTCGGAGACAAGGCTCATGTGCCCATCATTTCATTTTCTGCAACTAGTCCTTCTCTTTCTTCAATCCGGAGTCCATATTTTGTCCGAGCCACACTGAATGACTCAGCACAAGTACCAGCTATAAGGGCAATTGTCCAAGCCTTTGGGTGGAGACAAGTTGTGCTCATTTACTTGGACAACGAGTACGGAAATGGAGTTATACCGTATCTTACTGATGCCTTGCAAGAGATTGACACCCGTATCTCCTACAGGAGCGTCATTCATCCATTAGCCACAGATGATCAAATCCTCGAAGAGCTTTACAAGTTGATGACAATGCCAACCAGAGTTTTCATTGTACACATGTTTACACCTCTAGGCCCACGACTTTTTGGCAGAGCGAACGAGATTGGAATGATGGAAGAAGGTTTTGTATGGATTCTAACTGATGGGTTAACTGATATCTTGAGTACTTTGGATCCATCTGTCATTGATTCAATGCAAGGAGTGTTGGGGGTGAAGCCTCATGTTCCAAGATCGAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGGAAATCCAACAAGAATATCCGACCAATGAAAGCTTTGAGCTGAACATTTTTGGACTCTGGGCTTATGATGCCGCTTCTGGGTTAGCCATGGCAGTTGAAAAACTTGGGGCAACAAACTTCAGCTTCCAAAAGTCTCATATTTCCAGAAATTCAACCGATCTTGATACTGTAGGAGTCTCCCTAATTGGTCCAAAACTCCTCCAGTCACTATTAAATACTAGATTTAGAGGCCTCAGTGGGGATTTTCAAATTGTTAACAGACAACTACACTCATCAGCTTTTCAGGTAGTCAATGTGATACGCAAGGGGGAAAGAGGGGTAGGATTTTGGACACCAGAGAATGGAACTGTAAGAAAGTTGGATTCTACTTCCAAGCCCAATCTAGGAACAATCGTATGGCCAGGAGAATCTCCCTCCGTCCCTAAAGGTTGGGTCCTTCCAACCAATGAGAAGAAATTGAGAATAGGAGTACCAGTCGGCCAAGGTTATAGTGAATTTGTAAAGGTGACGCGAGATCCTAGCAGTAACACAACGGAGGTCACTGGATTTTCCATAGCAGTCTTCGATGCAGCGATGGTAGCATTACCATATGTTGTTCCTTATGAGTACATTCCCTTCGAGGGGCCTGATGGCAAACAAGCCGGTGATTACAACGATTTGATATATCAAGTATATCTCCAGAAGTATGATGCTGTGGTGGGAGATACTACTATTCTAGCGAACAGGTCCTTGTATGTAGACTTTACACTACCTTACACAGATTCTGGGTTGTCAATGGTCGTGCCCACTATAGATAAAAGAAAAAAAAATGCATGGGTTTTCTTGAAGCCACTTACTTGGGACCTTTGGGTGACAAGCTTTTGTTTCTTCGTATTCACTGGCTTTGTGATTTGGGTTCTTGAACATCGAGTAAATAAAGACTTCAGAGGGCCTCGTTCACATCAAGTTGGCACTATCTTCTGGTTTTCATTCTCAACATTGGTGTTTACTCAGAAGGAGAGAATTGTCAGCAACTTGGCTCGGATCGTGATGATCATATGGTTTTTTGTGGTGCTGATTCTTACTCAAAGTTACACAGCCAGCTTGGCTTCAATGTTAACAGTTCAACAACTCAACCCGACTATCACTGATATAAATGAGCTCATAAAGAAGGGGGAGCCTGTAGGTTGCCAAAATGACTCTTTCGTTTGTGAATTCTTGATCGAGTCGATGAAATTTGATGAGTCCAAGCTTGTAAAATATGAGTCCCCAGAAGAACTGGATGAATTATTTTCAAACAAGAGTTCAAAAGGTGGAATTGCTGCTGCATTTGATGAAATCCCTTACATGAAGATTTTCCTTGCAAAATATTGCTCCAAATACACAGCAGTCGGACCAACATACAAGTTTGATGGGTTTGGATTTGTGTTTCCAAAGGGTTCACCCCTTGTAGCTGATGTTTCAAGGGAAGTCTTAAACGTGACAGAGGGAGCTAAAATGCTACAATTCGAGAAGGCATGGTTTGGGCAAACACCCAGTTGTCCAGAGCTCACCAGCTCAGTTTCTTCGAACAGCATCGGCCTTAATAGCTTTTGGGGCCTATTCCTCATTGCTGGAGTCGCTTCATGCGTAGCTCTCACCACATGCATCACCATGTTCCTTTATGAAAATAGAGATATCTTAATAAACTTGAATCCCTCATCTTCCATATGGGGAAAAATTAAAGCCATGGCAACACGCTTTGAAGACAAAGATCTCAGGTCCCATACCTTTAGAAATAGTGATCTCAGTTCAAATCGGCCGATGCATCCACATATATTGTTTGAATATGAGCTTGCTAATATAAATCATGAGCAAACAAGATGTCATGCCCCGTGA | 5184 | 43.04 | MDTWLGKMGLSCISMALSDFYASHGHYKTRLVPEIRNSKRDVVGAAAAALDLLQNEDVQAIIGPASSMQANFLIGLGDKTHVPIISFSATSPSLSSLQSQYFIRATLNDSAQVPAIRAIVQAFGWREVVLIYVGNEYGNGVIPYLTDALQEIDTRIAYRYVIPPLATDDQIVKELYKLMTMSTRVFIVHMSTPLGPRLFTKANKVGMMDEGYVWILTDGMADMLSTLDESVIDSMQGVLGVKPHVPRSKELKSFEIRWKRKIQQEYPTNESYELNIFGLWAYDAASGNSTGLGTIQVSKTGPYLLQSLLSTKFRGLSGDFQIVDGQLRSSAFQIVNVIGKGERGVALWTPENGIVRNSNPTYKADLRTIIWPGDSPSVPKGWVLPTNGMKSLRIGVPVKEGFSEFVKVTRDPITNITKVTGYCIAIFDAVMAALPYSVPYEYIPFETSDGKPAGNYNDLIYQVYLQKYDAVVGDTTIVANRSLYVDFTLPYTESGVSMIVPVIDKRSKNAWVFLKPLTWDLWVTSACFFVFIGFVIWVLEHRINEDFRGPRSNQVGTILWFSFSTMVFAQKERVVSNLARFVVIIWFFVVLILTQSYTASLTSMLTVQQLKPTITDINELIKNGERVGYQTGSFVHEFLKWMKFDETKLVIYESPEGLDELFSNRSSDGGIAAAFEEIPYMKLFLAKYCSKYTAVQPTYKFDGFGFVFPKRSPLIPDVSMQVLNVTEGAKMVQFEKAWFGQTPSCPELTSSVSSNSIGLNSFWGLFLIAGVASFVALIICITTFLYENRDTLVHLDPPASVWRKIKAMATRFDHKDLSSHTFRKSEMVDRKMAMSQNTTIPVKVGVVLDMDTWLGKMGLSCITMALSDFYASHGHYKTRLVLEIRDSKRDVVGAAAAALDLLQNEEVQAIIGPASSMQANFVIGLGDKAHVPIISFSATSPSLSSIRSPYFVRATLNDSAQVPAIRAIVQAFGWRQVVLIYLDNEYGNGVIPYLTDALQEIDTRISYRSVIHPLATDDQILEELYKLMTMPTRVFIVHMFTPLGPRLFGRANEIGMMEEGFVWILTDGLTDILSTLDPSVIDSMQGVLGVKPHVPRSKELESFKIRWKREIQQEYPTNESFELNIFGLWAYDAASGLAMAVEKLGATNFSFQKSHISRNSTDLDTVGVSLIGPKLLQSLLNTRFRGLSGDFQIVNRQLHSSAFQVVNVIRKGERGVGFWTPENGTVRKLDSTSKPNLGTIVWPGESPSVPKGWVLPTNEKKLRIGVPVGQGYSEFVKVTRDPSSNTTEVTGFSIAVFDAAMVALPYVVPYEYIPFEGPDGKQAGDYNDLIYQVYLQKYDAVVGDTTILANRSLYVDFTLPYTDSGLSMVVPTIDKRKKNAWVFLKPLTWDLWVTSFCFFVFTGFVIWVLEHRVNKDFRGPRSHQVGTIFWFSFSTLVFTQKERIVSNLARIVMIIWFFVVLILTQSYTASLASMLTVQQLNPTITDINELIKKGEPVGCQNDSFVCEFLIESMKFDESKLVKYESPEELDELFSNKSSKGGIAAAFDEIPYMKIFLAKYCSKYTAVGPTYKFDGFGFVFPKGSPLVADVSREVLNVTEGAKMLQFEKAWFGQTPSCPELTSSVSSNSIGLNSFWGLFLIAGVASCVALTTCITMFLYENRDILINLNPSSSIWGKIKAMATRFEDKDLRSHTFRNSDLSSNRPMHPHILFEYELANINHEQTRCHAP* | 1728 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 8484122 | 8513037 | + | Vvi4g648 | Vvi4g648 | 785427 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g648 | 1727 | Pfam | Ligand-gated ion channel | 1613 | 1643 | IPR001320 | GO:0015276|GO:0016020 | |
Vvi4g648 | 1727 | Pfam | Ligand-gated ion channel | 742 | 772 | IPR001320 | GO:0015276|GO:0016020 | |
Vvi4g648 | 1727 | Gene3D | - | 1173 | 1265 | - | - | |
Vvi4g648 | 1727 | Gene3D | - | 292 | 394 | - | - | |
Vvi4g648 | 1727 | CDD | PBP1_GABAb_receptor_plant | 1 | 357 | IPR044440 | - | |
Vvi4g648 | 1727 | SUPERFAMILY | Periplasmic binding protein-like I | 841 | 1253 | IPR028082 | - | |
Vvi4g648 | 1727 | Gene3D | - | 1558 | 1618 | - | - | |
Vvi4g648 | 1727 | SUPERFAMILY | Periplasmic binding protein-like II | 368 | 741 | - | - | |
Vvi4g648 | 1727 | CDD | GluR_Plant | 1260 | 1610 | - | - | |
Vvi4g648 | 1727 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 1286 | 1612 | IPR001638 | - | |
Vvi4g648 | 1727 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 418 | 741 | IPR001638 | - | |
Vvi4g648 | 1727 | PANTHER | GLUTAMATE RECEPTOR 2.9 | 1 | 831 | - | - | |
Vvi4g648 | 1727 | PANTHER | GLUTAMATE RECEPTOR 2.9 | 841 | 1707 | - | - | |
Vvi4g648 | 1727 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 841 | 1707 | - | - | |
Vvi4g648 | 1727 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 1 | 831 | - | - | |
Vvi4g648 | 1727 | Gene3D | - | 1380 | 1523 | - | - | |
Vvi4g648 | 1727 | Gene3D | - | 510 | 649 | - | - | |
Vvi4g648 | 1727 | Gene3D | - | 959 | 1124 | - | - | |
Vvi4g648 | 1727 | Gene3D | - | 110 | 275 | - | - | |
Vvi4g648 | 1727 | SUPERFAMILY | Periplasmic binding protein-like II | 1238 | 1612 | - | - | |
Vvi4g648 | 1727 | CDD | PBP1_GABAb_receptor_plant | 843 | 1229 | IPR044440 | - | |
Vvi4g648 | 1727 | Pfam | Receptor family ligand binding region | 12 | 338 | IPR001828 | - | |
Vvi4g648 | 1727 | Pfam | Receptor family ligand binding region | 861 | 1209 | IPR001828 | - | |
Vvi4g648 | 1727 | Gene3D | - | 399 | 509 | - | - | |
Vvi4g648 | 1727 | Gene3D | - | 1271 | 1379 | - | - | |
Vvi4g648 | 1727 | CDD | GluR_Plant | 390 | 739 | - | - | |
Vvi4g648 | 1727 | SMART | GluR_14 | 391 | 741 | IPR001320 | GO:0015276|GO:0016020 | |
Vvi4g648 | 1727 | SMART | GluR_14 | 1261 | 1612 | IPR001320 | GO:0015276|GO:0016020 | |
Vvi4g648 | 1727 | SUPERFAMILY | Periplasmic binding protein-like I | 4 | 382 | IPR028082 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g648 | K05387 | - | vvi:100260624 | 1784.62 |