Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g648 ATGGATACCTGGCTAGGGAAGATGGGATTGAGCTGCATCTCCATGGCACTCTCAGACTTCTATGCCTCTCATGGGCACTACAAGACTAGGCTGGTTCCGGAAATTAGAAACTCCAAACGAGATGTCGTTGGTGCAGCTGCAGCTGCTCTAGACTTGTTGCAAAATGAGGACGTTCAAGCCATCATAGGACCAGCATCTTCCATGCAGGCCAACTTCCTGATTGGTCTCGGAGACAAAACTCATGTGCCCATCATTTCATTTTCTGCAACAAGCCCTTCTCTTTCTTCACTTCAGAGTCAATATTTTATCCGAGCCACCCTAAATGACTCAGCTCAAGTACCAGCAATAAGGGCAATTGTCCAAGCCTTTGGATGGAGAGAAGTTGTGCTTATTTACGTGGGCAATGAGTATGGGAATGGCGTTATACCATATCTTACCGATGCCTTGCAAGAGATTGACACCCGTATCGCCTACAGGTACGTCATTCCTCCATTAGCCACTGATGATCAAATTGTCAAAGAACTTTACAAGCTGATGACAATGTCAACCAGAGTTTTCATTGTACACATGTCTACACCTCTTGGGCCTCGGCTTTTCACCAAAGCAAATAAGGTGGGAATGATGGATGAAGGCTATGTTTGGATACTGACTGATGGGATGGCTGATATGTTGAGTACTTTGGATGAGTCGGTCATTGATTCGATGCAAGGAGTGTTGGGTGTAAAGCCTCATGTTCCTAGATCTAAAGAGCTTAAAAGTTTTGAAATCAGATGGAAAAGAAAAATCCAGCAAGAATATCCAACCAATGAAAGCTATGAGTTGAACATATTTGGCCTCTGGGCTTATGATGCTGCTTCTGGAAATTCAACCGGTCTTGGGACTATACAAGTCTCCAAAACTGGTCCATATCTTCTCCAATCACTTCTAAGTACTAAATTCAGAGGCCTCAGTGGAGATTTTCAAATTGTTGATGGGCAACTACGTTCATCAGCCTTTCAGATAGTCAATGTGATCGGTAAAGGGGAAAGAGGGGTGGCACTTTGGACACCGGAGAATGGGATTGTAAGAAATTCAAATCCTACTTATAAGGCTGATCTAAGAACCATCATATGGCCGGGAGACTCTCCTTCGGTTCCTAAAGGTTGGGTGCTTCCCACAAACGGCATGAAGTCCTTGAGAATAGGAGTACCAGTGAAAGAGGGGTTTAGTGAATTTGTAAAGGTGACACGAGATCCTATCACTAACATTACAAAGGTCACTGGATACTGCATAGCTATCTTCGATGCTGTGATGGCAGCATTGCCATATTCTGTTCCTTACGAGTACATTCCGTTCGAGACCTCTGATGGCAAGCCTGCTGGCAATTACAATGATTTGATATATCAAGTATATCTTCAGAAGTATGATGCTGTTGTGGGAGATACTACTATCGTAGCGAACAGGTCCTTATATGTAGACTTTACGCTGCCTTACACGGAATCTGGGGTGTCAATGATTGTGCCCGTCATAGATAAAAGAAGTAAAAATGCATGGGTTTTCTTGAAGCCACTGACTTGGGACCTTTGGGTGACAAGCGCTTGTTTCTTTGTCTTCATTGGTTTTGTGATTTGGGTTCTGGAACATCGTATAAATGAAGATTTTAGAGGACCTCGTTCAAATCAAGTTGGCACGATCCTCTGGTTTTCATTCTCGACCATGGTGTTTGCCCAGAAGGAGAGAGTTGTGAGTAACTTGGCTCGGTTCGTGGTGATCATATGGTTTTTCGTGGTGCTGATTCTTACTCAAAGTTATACTGCCAGCTTGACTTCAATGTTAACAGTTCAACAGCTGAAGCCGACTATCACAGACATAAATGAGCTCATAAAGAATGGGGAGCGTGTGGGTTACCAGACGGGCTCTTTTGTTCATGAATTCTTGAAGTGGATGAAATTTGATGAAACCAAGCTTGTAATCTATGAGTCTCCAGAAGGGCTGGATGAATTATTTTCAAACAGGAGTTCAGATGGTGGAATTGCTGCTGCTTTTGAGGAAATCCCTTACATGAAGCTTTTCCTTGCAAAATATTGCTCCAAATACACTGCAGTTCAACCAACTTACAAGTTTGATGGGTTTGGATTTGTCTTCCCAAAGCGATCACCTCTCATACCTGATGTTTCAATGCAAGTCTTAAATGTGACTGAGGGAGCTAAAATGGTTCAATTTGAGAAAGCATGGTTTGGGCAGACACCCAGTTGTCCAGAGCTCACCAGCTCAGTTTCTTCAAACAGCATCGGCCTTAATAGCTTTTGGGGCCTATTCCTCATTGCTGGAGTCGCTTCATTTGTAGCTCTCATCATATGCATCACCACTTTCTTGTATGAAAATAGAGATACTTTAGTACACTTGGATCCCCCAGCTTCAGTATGGAGAAAAATTAAAGCCATGGCGACACGCTTTGATCACAAAGACCTCAGCTCGCATACTTTCAGGAAAAGTGAAATGGTAGATAGAAAGATGGCCATGTCACAGAACACAACAATACCAGTTAAAGTGGGAGTGGTTCTTGACATGGATACATGGCTGGGTAAGATGGGTTTGAGCTGCATCACCATGGCCCTCTCAGACTTCTATGCCTCTCATGGGCACTACAAGACTAGGCTGGTTCTGGAAATCAGAGATTCCAAAAGAGATGTTGTGGGTGCAGCTGCAGCAGCTCTAGATTTATTACAAAATGAGGAAGTTCAAGCCATCATAGGACCAGCATCCTCCATGCAGGCCAACTTTGTGATTGGCCTCGGAGACAAGGCTCATGTGCCCATCATTTCATTTTCTGCAACTAGTCCTTCTCTTTCTTCAATCCGGAGTCCATATTTTGTCCGAGCCACACTGAATGACTCAGCACAAGTACCAGCTATAAGGGCAATTGTCCAAGCCTTTGGGTGGAGACAAGTTGTGCTCATTTACTTGGACAACGAGTACGGAAATGGAGTTATACCGTATCTTACTGATGCCTTGCAAGAGATTGACACCCGTATCTCCTACAGGAGCGTCATTCATCCATTAGCCACAGATGATCAAATCCTCGAAGAGCTTTACAAGTTGATGACAATGCCAACCAGAGTTTTCATTGTACACATGTTTACACCTCTAGGCCCACGACTTTTTGGCAGAGCGAACGAGATTGGAATGATGGAAGAAGGTTTTGTATGGATTCTAACTGATGGGTTAACTGATATCTTGAGTACTTTGGATCCATCTGTCATTGATTCAATGCAAGGAGTGTTGGGGGTGAAGCCTCATGTTCCAAGATCGAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGGAAATCCAACAAGAATATCCGACCAATGAAAGCTTTGAGCTGAACATTTTTGGACTCTGGGCTTATGATGCCGCTTCTGGGTTAGCCATGGCAGTTGAAAAACTTGGGGCAACAAACTTCAGCTTCCAAAAGTCTCATATTTCCAGAAATTCAACCGATCTTGATACTGTAGGAGTCTCCCTAATTGGTCCAAAACTCCTCCAGTCACTATTAAATACTAGATTTAGAGGCCTCAGTGGGGATTTTCAAATTGTTAACAGACAACTACACTCATCAGCTTTTCAGGTAGTCAATGTGATACGCAAGGGGGAAAGAGGGGTAGGATTTTGGACACCAGAGAATGGAACTGTAAGAAAGTTGGATTCTACTTCCAAGCCCAATCTAGGAACAATCGTATGGCCAGGAGAATCTCCCTCCGTCCCTAAAGGTTGGGTCCTTCCAACCAATGAGAAGAAATTGAGAATAGGAGTACCAGTCGGCCAAGGTTATAGTGAATTTGTAAAGGTGACGCGAGATCCTAGCAGTAACACAACGGAGGTCACTGGATTTTCCATAGCAGTCTTCGATGCAGCGATGGTAGCATTACCATATGTTGTTCCTTATGAGTACATTCCCTTCGAGGGGCCTGATGGCAAACAAGCCGGTGATTACAACGATTTGATATATCAAGTATATCTCCAGAAGTATGATGCTGTGGTGGGAGATACTACTATTCTAGCGAACAGGTCCTTGTATGTAGACTTTACACTACCTTACACAGATTCTGGGTTGTCAATGGTCGTGCCCACTATAGATAAAAGAAAAAAAAATGCATGGGTTTTCTTGAAGCCACTTACTTGGGACCTTTGGGTGACAAGCTTTTGTTTCTTCGTATTCACTGGCTTTGTGATTTGGGTTCTTGAACATCGAGTAAATAAAGACTTCAGAGGGCCTCGTTCACATCAAGTTGGCACTATCTTCTGGTTTTCATTCTCAACATTGGTGTTTACTCAGAAGGAGAGAATTGTCAGCAACTTGGCTCGGATCGTGATGATCATATGGTTTTTTGTGGTGCTGATTCTTACTCAAAGTTACACAGCCAGCTTGGCTTCAATGTTAACAGTTCAACAACTCAACCCGACTATCACTGATATAAATGAGCTCATAAAGAAGGGGGAGCCTGTAGGTTGCCAAAATGACTCTTTCGTTTGTGAATTCTTGATCGAGTCGATGAAATTTGATGAGTCCAAGCTTGTAAAATATGAGTCCCCAGAAGAACTGGATGAATTATTTTCAAACAAGAGTTCAAAAGGTGGAATTGCTGCTGCATTTGATGAAATCCCTTACATGAAGATTTTCCTTGCAAAATATTGCTCCAAATACACAGCAGTCGGACCAACATACAAGTTTGATGGGTTTGGATTTGTGTTTCCAAAGGGTTCACCCCTTGTAGCTGATGTTTCAAGGGAAGTCTTAAACGTGACAGAGGGAGCTAAAATGCTACAATTCGAGAAGGCATGGTTTGGGCAAACACCCAGTTGTCCAGAGCTCACCAGCTCAGTTTCTTCGAACAGCATCGGCCTTAATAGCTTTTGGGGCCTATTCCTCATTGCTGGAGTCGCTTCATGCGTAGCTCTCACCACATGCATCACCATGTTCCTTTATGAAAATAGAGATATCTTAATAAACTTGAATCCCTCATCTTCCATATGGGGAAAAATTAAAGCCATGGCAACACGCTTTGAAGACAAAGATCTCAGGTCCCATACCTTTAGAAATAGTGATCTCAGTTCAAATCGGCCGATGCATCCACATATATTGTTTGAATATGAGCTTGCTAATATAAATCATGAGCAAACAAGATGTCATGCCCCGTGA 5184 43.04 MDTWLGKMGLSCISMALSDFYASHGHYKTRLVPEIRNSKRDVVGAAAAALDLLQNEDVQAIIGPASSMQANFLIGLGDKTHVPIISFSATSPSLSSLQSQYFIRATLNDSAQVPAIRAIVQAFGWREVVLIYVGNEYGNGVIPYLTDALQEIDTRIAYRYVIPPLATDDQIVKELYKLMTMSTRVFIVHMSTPLGPRLFTKANKVGMMDEGYVWILTDGMADMLSTLDESVIDSMQGVLGVKPHVPRSKELKSFEIRWKRKIQQEYPTNESYELNIFGLWAYDAASGNSTGLGTIQVSKTGPYLLQSLLSTKFRGLSGDFQIVDGQLRSSAFQIVNVIGKGERGVALWTPENGIVRNSNPTYKADLRTIIWPGDSPSVPKGWVLPTNGMKSLRIGVPVKEGFSEFVKVTRDPITNITKVTGYCIAIFDAVMAALPYSVPYEYIPFETSDGKPAGNYNDLIYQVYLQKYDAVVGDTTIVANRSLYVDFTLPYTESGVSMIVPVIDKRSKNAWVFLKPLTWDLWVTSACFFVFIGFVIWVLEHRINEDFRGPRSNQVGTILWFSFSTMVFAQKERVVSNLARFVVIIWFFVVLILTQSYTASLTSMLTVQQLKPTITDINELIKNGERVGYQTGSFVHEFLKWMKFDETKLVIYESPEGLDELFSNRSSDGGIAAAFEEIPYMKLFLAKYCSKYTAVQPTYKFDGFGFVFPKRSPLIPDVSMQVLNVTEGAKMVQFEKAWFGQTPSCPELTSSVSSNSIGLNSFWGLFLIAGVASFVALIICITTFLYENRDTLVHLDPPASVWRKIKAMATRFDHKDLSSHTFRKSEMVDRKMAMSQNTTIPVKVGVVLDMDTWLGKMGLSCITMALSDFYASHGHYKTRLVLEIRDSKRDVVGAAAAALDLLQNEEVQAIIGPASSMQANFVIGLGDKAHVPIISFSATSPSLSSIRSPYFVRATLNDSAQVPAIRAIVQAFGWRQVVLIYLDNEYGNGVIPYLTDALQEIDTRISYRSVIHPLATDDQILEELYKLMTMPTRVFIVHMFTPLGPRLFGRANEIGMMEEGFVWILTDGLTDILSTLDPSVIDSMQGVLGVKPHVPRSKELESFKIRWKREIQQEYPTNESFELNIFGLWAYDAASGLAMAVEKLGATNFSFQKSHISRNSTDLDTVGVSLIGPKLLQSLLNTRFRGLSGDFQIVNRQLHSSAFQVVNVIRKGERGVGFWTPENGTVRKLDSTSKPNLGTIVWPGESPSVPKGWVLPTNEKKLRIGVPVGQGYSEFVKVTRDPSSNTTEVTGFSIAVFDAAMVALPYVVPYEYIPFEGPDGKQAGDYNDLIYQVYLQKYDAVVGDTTILANRSLYVDFTLPYTDSGLSMVVPTIDKRKKNAWVFLKPLTWDLWVTSFCFFVFTGFVIWVLEHRVNKDFRGPRSHQVGTIFWFSFSTLVFTQKERIVSNLARIVMIIWFFVVLILTQSYTASLASMLTVQQLNPTITDINELIKKGEPVGCQNDSFVCEFLIESMKFDESKLVKYESPEELDELFSNKSSKGGIAAAFDEIPYMKIFLAKYCSKYTAVGPTYKFDGFGFVFPKGSPLVADVSREVLNVTEGAKMLQFEKAWFGQTPSCPELTSSVSSNSIGLNSFWGLFLIAGVASCVALTTCITMFLYENRDILINLNPSSSIWGKIKAMATRFEDKDLRSHTFRNSDLSSNRPMHPHILFEYELANINHEQTRCHAP* 1728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8484122 8513037 + Vvi4g648 Vvi4g648 785427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g648 1727 Pfam Ligand-gated ion channel 1613 1643 IPR001320 GO:0015276|GO:0016020
Vvi4g648 1727 Pfam Ligand-gated ion channel 742 772 IPR001320 GO:0015276|GO:0016020
Vvi4g648 1727 Gene3D - 1173 1265 - -
Vvi4g648 1727 Gene3D - 292 394 - -
Vvi4g648 1727 CDD PBP1_GABAb_receptor_plant 1 357 IPR044440 -
Vvi4g648 1727 SUPERFAMILY Periplasmic binding protein-like I 841 1253 IPR028082 -
Vvi4g648 1727 Gene3D - 1558 1618 - -
Vvi4g648 1727 SUPERFAMILY Periplasmic binding protein-like II 368 741 - -
Vvi4g648 1727 CDD GluR_Plant 1260 1610 - -
Vvi4g648 1727 Pfam Bacterial extracellular solute-binding proteins, family 3 1286 1612 IPR001638 -
Vvi4g648 1727 Pfam Bacterial extracellular solute-binding proteins, family 3 418 741 IPR001638 -
Vvi4g648 1727 PANTHER GLUTAMATE RECEPTOR 2.9 1 831 - -
Vvi4g648 1727 PANTHER GLUTAMATE RECEPTOR 2.9 841 1707 - -
Vvi4g648 1727 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 841 1707 - -
Vvi4g648 1727 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 831 - -
Vvi4g648 1727 Gene3D - 1380 1523 - -
Vvi4g648 1727 Gene3D - 510 649 - -
Vvi4g648 1727 Gene3D - 959 1124 - -
Vvi4g648 1727 Gene3D - 110 275 - -
Vvi4g648 1727 SUPERFAMILY Periplasmic binding protein-like II 1238 1612 - -
Vvi4g648 1727 CDD PBP1_GABAb_receptor_plant 843 1229 IPR044440 -
Vvi4g648 1727 Pfam Receptor family ligand binding region 12 338 IPR001828 -
Vvi4g648 1727 Pfam Receptor family ligand binding region 861 1209 IPR001828 -
Vvi4g648 1727 Gene3D - 399 509 - -
Vvi4g648 1727 Gene3D - 1271 1379 - -
Vvi4g648 1727 CDD GluR_Plant 390 739 - -
Vvi4g648 1727 SMART GluR_14 391 741 IPR001320 GO:0015276|GO:0016020
Vvi4g648 1727 SMART GluR_14 1261 1612 IPR001320 GO:0015276|GO:0016020
Vvi4g648 1727 SUPERFAMILY Periplasmic binding protein-like I 4 382 IPR028082 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g648 K05387 - vvi:100260624 1784.62