Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g650 ATGAGAAACGACCTTGCCCAACAGGGGTTCGCCCTCTTCTTTCTCTCCCTATGGGTTCTCTTCATAGAAATGGGCATGGCGCAGAACACAACAATCCCAGTTAACGTGGGAGTGGTCCTTGACTTTGATACATCGTTTGGAAAGATGGGTCTGAGCTGCATCCCCATGGCCCTCTCAGATTTCTATGCCTCTCATGGTAACTACAAGACTAGGCTCGTTCTGAAGACTAGAGACTCCAGAAGAGATGTTGTTGGTGCAGCTGCAGCAGCTCTAGATCTAATACAAAATGAGGAAGTGCAAGCCATCATAGGGCCAGGGTCATCCATGCAGGCCAACTTCCTGATTGTCCTGGGACAAAAAGCCCAGGTTCCCATTATTTCATTTTCTGCATCAAGCCCTTCTCTTTCTTCCCTCAGGAGTCAATACTTTATCCGAGCCACTCTAAATGACTCAGCTCAAGTACCAGCAATAATAGCAATTTTCCAAGCCTTTGAGTGGAGAGAAGCTGTGCTTATTTACGTAGACAATGAGTATGGGGATGGAATTATACCTTATATGACCGATGCCTTGCAAGGGATTGATGTCCGTGTCACCTACCGTAGTGTAATTTCTCCATCAGCCACTGATGATCAAATTGGTGAAGAGCTTTACAAGCTGATGACAATGCAAACTAGAGTTTTCATTGTACACATGGTTACGCCTCTCGGCTCTCGCTTTTTTACCAAAGCAGATGAGATTGGAATGATGGAAGAAGGCTATGTTTGGATACTAACTGATGGGCTAACTGACCTCTTGAGTACTTTGGATCCCTTAGTCATTGACTCAATGCAGGGGGTGCTGGGCATAAAGCCTCATGTTCCAAGAACAAAAGAGCTCGAAAATTTCAGAGTCCGATGGAAAAGGAAGTTCCAGCAAGATCATCCAAAAGATGAGACCTCTGAGCTGAACATTTTTGGATTATGGGCGTATGACGCTGCTTCTGCACTAGCCATGGCAGTTGAGAAAGTTGGGGCAACAAATTTAAGCTTCCAAAAGACTAATATTTCCAGCAATTCAACGGATCTTGACACCATTGGAGTCTCACAAATTGGTCCAAAGCTTCTCCAGTCACTGTTAAGTACGAAATTTAAAGGCCTCAGTGGAGATTTTCAAATTTTTGATGGTCAACTACACCCCACAGCCTTTCAGATAGTTAATGTGATTGGTAAAGGGGAAAGAGGGATAGGATTTTGGACTCCGAAAAATGGAATTATAAGAAGACTGAAATTCACAAACGCAAATTCAAACACATATTCCACTTCTAAGGACAATCTAGGAGCAATTGTATGGCCTGGAGAACCTACTTATTTCCCTAAAGGTTGGGTGCTTCCAGTAAACGAGAAGAAGTTGAAAATAGGGGTTCCAGTGAAGGATGGTTTTAGTGAATTTGTAAAAGTGACATGGGATCCTAACACTAATGCAACAAAGGTCACTGGGTACTGCATAGATGTCTTTGATGCGGTGATGGGTTCACTACCATATGCTGTTCCTTACGAGTACATTCCCTTTGGAACCCCAGACGGCAAGCCTGCCGGCAACTACAACGATTTGATATATCAAGTGTTTCTAAAGAAGTATGATGCCGTGGTGGGAGATACTACAATTGTAGCGAACAGGTCCAACTATGTAGATTTTACACTACCTTACACTGAATCTGGCGTATCAATGATCGTGCCCATCAAAGACAACAAAAGCAAAAGCGCATGGATTTTCTTGAAGCCATTGACTTGGGACCTCTGGGTGACTAGTGCGTGTTTCTTTGTTTTCATCGGCTTTGTAATTTGGGTTCTTGAACATCGAATAAATGAAGATTTCAGGGGCCCTCCTTCACATCAAGTAGGCACCATCTTCTGGTTCTCCTTCTCAACTATGGTGTTTGCACAGAAGGAGAGAATTGTGAGCAACTTGGCTCGGTTTGTGATGATCATATGGTTCTTTGTGGTGCTCATCCTCACTCAAAGTTACACCGCCAGCTTGACCTCAATGTTAACCGTCCAACAGCTCCAGCCAACCGTTACAGACATAAAAGAGCTAAGAGCGAAAGATGAGTATGTAGGTTACCAACAAGGCTCTTTCGTTCTCGGATTCTTGAAAAGGATGAACTTTGACGAATCCAAGTTTAGGATCTATAATTCTCCAGAAGAATTAGCTGAACTAATCTCGAAAGGGAGTGCAAATGGAGGTATTGCTGCTGCCTTTGACGAGATACCTTACATGAAGCTGTTCATTGCACAGCATTGCTCGAAATATACCATGGTTCAACCAACATACAAATTTGATGGGTTCGGATTTGCCTTCCCAAGAGGTTCTCCTCTCGTACAGGATGTTTCAAGGGCAGTCTTAAAGGTGACTGAGGGAGATGAAATGGTAAAGATTGAAAAAGAGTGGTTTGGGAAAAAAACTAGTTGTTCAGATGATAATGGAAGCTCACTTTCTTCTAACAATATCAGCCTTGATAGCTTTTGGGGCCTTTTCCTCATTGCTGGAGCCACTTCATCTTTAGCTCTGATCATAGGTATTGCCATGTTCCTGCATAAACATAGAGTTGTGGTAATGGGCGAAGATTCAGTATCAGAAAAGATTAAAACCTTGGCTACACGTTTTGATCAAAAAGACCTCAGCTCTCATACTTTCAGAATACCTGACCAGCCATACAGCGGTAGCACTGAGCCTATGGCTGCAGTTGGAGCCTCTCCATCAGTGATTAACTGCTTGCCAAGGCCATCAACCCTTTCCAACCAAACCATTAATGAGATTTCCCTCTCCGGAGAACAAGGGACCTTTTCTTCAGAGCACGGTGGTGGTGGGAGCTCAACCACACCTACTCATCTCCTCTTCCGCTTCATTTATAGAATGAGTCCTCATCTTTCATCATCTTCTTATATTTCATTATCTTCCTTTGATGCACAAAACAAAAAACTCATATTTCCTTAA 2973 43.22 MRNDLAQQGFALFFLSLWVLFIEMGMAQNTTIPVNVGVVLDFDTSFGKMGLSCIPMALSDFYASHGNYKTRLVLKTRDSRRDVVGAAAAALDLIQNEEVQAIIGPGSSMQANFLIVLGQKAQVPIISFSASSPSLSSLRSQYFIRATLNDSAQVPAIIAIFQAFEWREAVLIYVDNEYGDGIIPYMTDALQGIDVRVTYRSVISPSATDDQIGEELYKLMTMQTRVFIVHMVTPLGSRFFTKADEIGMMEEGYVWILTDGLTDLLSTLDPLVIDSMQGVLGIKPHVPRTKELENFRVRWKRKFQQDHPKDETSELNIFGLWAYDAASALAMAVEKVGATNLSFQKTNISSNSTDLDTIGVSQIGPKLLQSLLSTKFKGLSGDFQIFDGQLHPTAFQIVNVIGKGERGIGFWTPKNGIIRRLKFTNANSNTYSTSKDNLGAIVWPGEPTYFPKGWVLPVNEKKLKIGVPVKDGFSEFVKVTWDPNTNATKVTGYCIDVFDAVMGSLPYAVPYEYIPFGTPDGKPAGNYNDLIYQVFLKKYDAVVGDTTIVANRSNYVDFTLPYTESGVSMIVPIKDNKSKSAWIFLKPLTWDLWVTSACFFVFIGFVIWVLEHRINEDFRGPPSHQVGTIFWFSFSTMVFAQKERIVSNLARFVMIIWFFVVLILTQSYTASLTSMLTVQQLQPTVTDIKELRAKDEYVGYQQGSFVLGFLKRMNFDESKFRIYNSPEELAELISKGSANGGIAAAFDEIPYMKLFIAQHCSKYTMVQPTYKFDGFGFAFPRGSPLVQDVSRAVLKVTEGDEMVKIEKEWFGKKTSCSDDNGSSLSSNNISLDSFWGLFLIAGATSSLALIIGIAMFLHKHRVVVMGEDSVSEKIKTLATRFDQKDLSSHTFRIPDQPYSGSTEPMAAVGASPSVINCLPRPSTLSNQTINEISLSGEQGTFSSEHGGGGSSTTPTHLLFRFIYRMSPHLSSSSYISLSSFDAQNKKLIFP* 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8600288 8616390 + Vvi4g650 Vvi4g650 785429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g650 990 PANTHER GLUTAMATE RECEPTOR 2.9 33 900 - -
Vvi4g650 990 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 900 - -
Vvi4g650 990 Gene3D - 462 581 - -
Vvi4g650 990 Gene3D - 714 818 - -
Vvi4g650 990 Gene3D - 317 461 - -
Vvi4g650 990 Pfam Receptor family ligand binding region 53 401 IPR001828 -
Vvi4g650 990 SMART GluR_14 462 812 IPR001320 GO:0015276|GO:0016020
Vvi4g650 990 PIRSF IGluLR_plant 4 939 IPR017103 -
Vvi4g650 990 CDD PBP1_GABAb_receptor_plant 35 421 IPR044440 -
Vvi4g650 990 Gene3D - 582 713 - -
Vvi4g650 990 SUPERFAMILY Periplasmic binding protein-like II 439 813 - -
Vvi4g650 990 Pfam Bacterial extracellular solute-binding proteins, family 3 487 812 IPR001638 -
Vvi4g650 990 SUPERFAMILY Periplasmic binding protein-like I 33 454 IPR028082 -
Vvi4g650 990 Pfam Ligand-gated ion channel 813 843 IPR001320 GO:0015276|GO:0016020
Vvi4g650 990 Gene3D - 151 314 - -
Vvi4g650 990 CDD GluR_Plant 461 810 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g650 K05387 - vvi:100855255 1837.77