Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g651 ATGGCAGCATTTCCATATTCTGTTCCTTACGAGTACATTTCGTTCGAGACCTCTGATGGCAAGCCTGATGGCAATTACAATGATTTGATATATCAAGTATATCTTCAGAAGTATGATGCTGTTGTGGGAGATACTACTACCGTAGCGAACAGGTCCTTATATGTAGACTTTACGCTGCCTTATACAGAATCTGGGGTGTCAATGATTGTGCGCATTATAGATAAAAGAAGTAAAAATGCATGGGGCCTTGTTCAAATCAAGTTGGCACGATCCTCTGGTTTTCATTCTCGACCATGGTGTTTGCCTAGAGACAGAGTTGTGAGTAACTTGGCTCAGTTCATGGTGATCATATGGTTTTTCGTGGTCCTGATTCTTACTCAAAGTTATACTGCCAGCTTGACTTCAATGTTAACAGTTCAATATTCAGATGGTGGAATTGCTGCTGCTTTTGAGGAAATCCCTTACATGAAGCTTTTCCTTGCAAAATATTGCTCTAAATACACTGCAGTTCAACCAACTTACAAGTTCGGGTTTGGATTTGTCTTTCCAAAGCGATCACCTCTCATACCTGATGTTTCAATGCAAGTCTTAAACGTGACTGAGGGAGCTAAAATGGTTCAATTTGAGAAAGCATGGTTTGGGCAGACACCCAGTTGTCCAGAGCTCACCAGCTCAGTTTCTTCAAACAGCATCGGCCTTAATAGCTTTTGGGGCCTATTCCTCACTGTTGGAGTCGCTTCATCTATAGCTCTCATCATATGCATCACCACTTTCCTCTATGAAAATAGAGATACTTTAGTACACTTGGATCCCCCAGCTTCAGTATGGAGAAAAATTAAAGCCATGGCAACACGCTTTGATCACAAAGACCTCAGCTCGCATACTTTCAGGAAAAGTGAAATGGTACATAGAAGTGGCATCAATGGTATGGATGCAGTTACAGCCTCGCCAGCTAGCTACCAACTGCCCCCCAAGTCCGTCAAGCCTTTCCATCCAAACAGAGAGTAA 1008 42.46 MAAFPYSVPYEYISFETSDGKPDGNYNDLIYQVYLQKYDAVVGDTTTVANRSLYVDFTLPYTESGVSMIVRIIDKRSKNAWGLVQIKLARSSGFHSRPWCLPRDRVVSNLAQFMVIIWFFVVLILTQSYTASLTSMLTVQYSDGGIAAAFEEIPYMKLFLAKYCSKYTAVQPTYKFGFGFVFPKRSPLIPDVSMQVLNVTEGAKMVQFEKAWFGQTPSCPELTSSVSSNSIGLNSFWGLFLTVGVASSIALIICITTFLYENRDTLVHLDPPASVWRKIKAMATRFDHKDLSSHTFRKSEMVHRSGINGMDAVTASPASYQLPPKSVKPFHPNRE* 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8622022 8624152 + Vvi4g651 Vvi4g651 785430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g651 335 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 104 140 - -
Vvi4g651 335 PANTHER GLUTAMATE RECEPTOR 2.9 104 140 - -
Vvi4g651 335 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 84 - -
Vvi4g651 335 SMART GluR_14 1 215 IPR001320 GO:0015276|GO:0016020
Vvi4g651 335 SUPERFAMILY Periplasmic binding protein-like II 5 215 - -
Vvi4g651 335 PANTHER GLUTAMATE RECEPTOR 2.9 142 303 - -
Vvi4g651 335 PANTHER GLUTAMATE RECEPTOR 2.9 1 84 - -
Vvi4g651 335 CDD GluR_Plant 1 213 - -
Vvi4g651 335 Pfam Bacterial extracellular solute-binding proteins, family 3 25 215 IPR001638 -
Vvi4g651 335 Pfam Ligand-gated ion channel 216 246 IPR001320 GO:0015276|GO:0016020
Vvi4g651 335 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 142 303 - -
Vvi4g651 335 Gene3D - 2 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g651 K05387 GRIP; glutamate receptor, ionotropic, plant - vvi:100241793 397.512
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g651 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00246 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202