Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g653 ATGGCCCTCTCAGACTTCTATGCCTCTCATGGGCACTACAAGACTAGGCTGGTTCTGGAAATCAGAGATTCCAAAAGAGATGTTATGGGTGCAGCTGCAGCAGCTCTAGATTTATTACAAAATGAGGAAGTTCAAGCCATCATAGGACCAGCATCCTCCATGCAGGCCAACTTTGTGATTGGTCTCGGAGACAAGGCTCATGTGCCCATCATTTCATTTTCTGCAACTAGTCCTTCTCTTTCTTCACTCCGGAGTCGATATTTTGTCCGAGCCACACTGAATGACTCAGCACAAGTACCAGCTATAAGGGCAATTGTCCAAGCCTTTGGGTGGAGACAAGTTGTGCTCATTTACTTTGACAACGAGTACGGAAATGGAGTTATACCGTATCTTACTGATGCCTTGCAAGAGATTCACACCCGTATCTCCTACAGGAGCGTCATTCATCCATTAGCCACAGATGATCAAATCCTCGAAGAGCTTCACAAGTTGATGACAATGCCAACCAGAGTTTTCATCGTACACATGTTTACACCTATAGGCCCACGACTTTTTGCCAGAGCGAACGAGATTGGAATGATGGAAGAAGGTTATGTATGGATTCTAACTGATGGGTTAACTGATATCTTGAGTACTTTGGATCCATCTGTCATTGATTCAATGCAAGGAGTGTTGGGGGTGAAGCCTCATGTTCCAAGATCGAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGGAAATCCAACAAGAATATCCGACCAATGAAAGCTTTGAGCTGAACATTTTTGGACTCTGGGCTTATGATGCCGCTTCTGGAAATTCAACCGATCTTGATACTGTAGGAGTCTCCCTAATTGGTCCAAAACTCCTCCAGTCACTATTAAATACTAGATTTAGAGGCCTCAGTGGGGATTTTCAAATTGTTAACAGACAACTACACTCATCAGCTTTTCAGGTAGTCAATGTGATAGGCAAGGGGGAAAGAGGGGTAGGATTTTGGACACCAGAGAATGGAACTGTAAGAAAGTTGGATTCTACTTCCAAGCCCAATCTAGGAACAATCGTATGGCCAGGAGAATCTCCCTCCGTCCCTAAAGGTTGGGTCCTTCCAACCAATGAGAAGAAATTGAGAATAGGAGTACCAGTCGGCCAAGGTTATAGTGAATTTGTAAAGGTGACGCGAGATCCTAGCAGTAACACAACGGAGGTCACTGGATTTTCCATAGCAGTCTTCGATGCAGCGATGGCAGCATTACCATATGTTGTTCCTTATGAACAACTCTTGGTTGGCTTCAATTATAATGAATTTTGTCAAACTAAAAAGCTATTGCAGTTCCCCAAGTATGATGCTGTGGTGGGAGATACTACTATTCTAGCGAACAGGTCCTTGTATGTAGACTTTACACTACCTTACACAGATTCTGGGTTGTCAATGGTCGTGCCCACTATAGATAAAAGAAAAAAAAATGCATGGGTTTTCTTGAAGCCACTTACTTGGGACCTTTGGGTGACAAGCTTTTGTTTCTTCGTATTCACTGGCTTTGTGATTTGGGTTCTTGAACATCGAGTAAATAAAGACTTCAGAGGGCCTCGTTCACATCAAGTTGGCACTATCTTCTGGTTTTCATTCTCAACATTGGTGTTTACTCAGAAGGAGAGAATTGTCAGCAACTTGGCTCGGATCGTGATGATCATATGGTTTTTTGTGGTGCTGATTCTTACTCAAAGTTACACAGCCAGCTTGGCTTCAATGTTAACAGTTCAACAACTCAACCCGACTATCACCGATATAAATGAGCTCATAAAGAAGGGGGAGCCTGTAGGTTGCCAAAATGACTCTTTCGTTTGTGAATTCTTGATCGAGTCGATGAAATTTGATGAGTCCAAGCTTGTAAAGTACGAGTCCCCAGAAGAACTGGATGAATTATTTTCAAACAAGAGTTCAAAAGGTGGAATTGCTGCTGCATTTGATGAAATCCCTTACATGAAGATTTTCCTTGCAAAATATTGCTCCAAATACACAGCAGTCGGACCAACATACAAGTTTGATGGGTTTGGATTTGTGTTTCCAAAGGGTTCACCCCTTGTAACTGATGTTTCAAGGGAAGTCTTAAACGTGACAGAGGGAGCTAAAATGCTACAATTCGAGAAGGCATGGTTTGGGCAAACACCCAGTTGTCCAGAGCTCACCAGCTCAGTTTCTTCAAACAGCATCGGCCTTAATAGCTTCTGGGGCCTATTCCTCATTGCTGGAGTCGCTTCATTCGTAGCTCTCATCACATGCATCACCATGTTCCTTTATGAAAATAGAGATACCTTAATAAACTTGAATCCCCCATCTTCCATATGGGGAAAAATTAAAGCCATGGCAACACGCTTTGAAGACAAAGATCTCAGGTCCCATACCTTTAGAAATAGTGATCAACTTCCAGACAAGCAACATCAAGGCCATGGATGTAGTTATAGCCTCGCCAGCTACACCAACTGCCCTCCAAGTCCATCAAGCCTTTTGATCCCAACACACAACAATTTTACTTTCTTCGGTGAACAAGGAACGCCTTCTTCTGGACATGTTGATCCGGTCAGTTCAAATCAGCCGATGCATCCACATATATTGTTTGAATATGAGCTTGCTAATATAAATCATGAGCAAACAAGATGTCATGCCCCGTGA 2676 42.79 MALSDFYASHGHYKTRLVLEIRDSKRDVMGAAAAALDLLQNEEVQAIIGPASSMQANFVIGLGDKAHVPIISFSATSPSLSSLRSRYFVRATLNDSAQVPAIRAIVQAFGWRQVVLIYFDNEYGNGVIPYLTDALQEIHTRISYRSVIHPLATDDQILEELHKLMTMPTRVFIVHMFTPIGPRLFARANEIGMMEEGYVWILTDGLTDILSTLDPSVIDSMQGVLGVKPHVPRSKELESFKIRWKREIQQEYPTNESFELNIFGLWAYDAASGNSTDLDTVGVSLIGPKLLQSLLNTRFRGLSGDFQIVNRQLHSSAFQVVNVIGKGERGVGFWTPENGTVRKLDSTSKPNLGTIVWPGESPSVPKGWVLPTNEKKLRIGVPVGQGYSEFVKVTRDPSSNTTEVTGFSIAVFDAAMAALPYVVPYEQLLVGFNYNEFCQTKKLLQFPKYDAVVGDTTILANRSLYVDFTLPYTDSGLSMVVPTIDKRKKNAWVFLKPLTWDLWVTSFCFFVFTGFVIWVLEHRVNKDFRGPRSHQVGTIFWFSFSTLVFTQKERIVSNLARIVMIIWFFVVLILTQSYTASLASMLTVQQLNPTITDINELIKKGEPVGCQNDSFVCEFLIESMKFDESKLVKYESPEELDELFSNKSSKGGIAAAFDEIPYMKIFLAKYCSKYTAVGPTYKFDGFGFVFPKGSPLVTDVSREVLNVTEGAKMLQFEKAWFGQTPSCPELTSSVSSNSIGLNSFWGLFLIAGVASFVALITCITMFLYENRDTLINLNPPSSIWGKIKAMATRFEDKDLRSHTFRNSDQLPDKQHQGHGCSYSLASYTNCPPSPSSLLIPTHNNFTFFGEQGTPSSGHVDPVSSNQPMHPHILFEYELANINHEQTRCHAP* 892
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8653855 8658091 + Vvi4g653 Vvi4g653 785432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g653 891 PIRSF IGluLR_plant 1 273 IPR017103 -
Vvi4g653 891 PIRSF IGluLR_plant 270 821 IPR017103 -
Vvi4g653 891 SUPERFAMILY Periplasmic binding protein-like I 1 368 IPR028082 -
Vvi4g653 891 Pfam Ligand-gated ion channel 724 754 IPR001320 GO:0015276|GO:0016020
Vvi4g653 891 Gene3D - 96 261 - -
Vvi4g653 891 CDD GluR_Plant 375 721 - -
Vvi4g653 891 Gene3D - 669 729 - -
Vvi4g653 891 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 822 - -
Vvi4g653 891 PANTHER GLUTAMATE RECEPTOR 2.9 1 822 - -
Vvi4g653 891 Gene3D - 282 376 - -
Vvi4g653 891 Gene3D - 377 489 - -
Vvi4g653 891 Gene3D - 490 634 - -
Vvi4g653 891 SMART GluR_14 376 723 IPR001320 GO:0015276|GO:0016020
Vvi4g653 891 Pfam Receptor family ligand binding region 1 324 IPR001828 -
Vvi4g653 891 CDD PBP1_GABAb_receptor_plant 1 344 IPR044440 -
Vvi4g653 891 Pfam Bacterial extracellular solute-binding proteins, family 3 401 723 IPR001638 -
Vvi4g653 891 SUPERFAMILY Periplasmic binding protein-like II 353 723 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g653 K05387 - vvi:100245431 1722.21