Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g655 ATGGCACAGAACACAACAATCCCAGTTAAAGTGGGAGTGGTTCTGGACTTGGATACATGGATTGGGAAGATGGGGTTGAGCTGCATCTCGATGGCCCTCTCAGACTTCTATGCCTCTCATGGCCACTACAAAACCAGGGTGGTTACAAAAATCAGAGACTCCAAAAGAGATGTTGGTGCAGCTGCAGCAGTTGTAGACCTCTTACAAAATGAAGAAGTGGAAGCCATAATAGGGCCCGGATCATCGATGCAGGCCAACTTCATGATTGGTCTTGGAAGCAAAGCTCGGGTGCCCATCATTTCATTTTCTGCAACAAGTCCTTCTCTTTCTTCGCTCCAGAGTCAATATTTTGTCCGAGCCACCCTAAATGACTCAGCTCAAGTACCAGCAATAAGGACAATAGTCCAGGCCTTTGGATGGAGAGAAGTTGTGCTTATTTACGTGGACAACGAGTATGGCAATGAAGTCGTACCGTCTCTGACTAGTGCCTTGCAGGAGGTGGACACCCATGTGACCTACCGGAGCGCCATTCATCCATCGGCAACTGACGATCAAATCGTTAAAGAACTTTACAAGTTGATGACGATGTCAACTAGGGTTTTCATTGTGCATATGCTTACGCCTCTTGGCTCCCAGCTTTTTACCAAAGCAAATGAGGCTGGAATGATGGAAGAAGGCTATGTTTGGATACTAACTGATGGGATAACTGACTTCTTGAGTACTTTGGACGCTTCAGCCATTGATTCGATGCAAGGGGTGTTGGGCGTCAAGCCCCATGTTCCAAGAACCAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAAGAAAATCCAAGAAGAATATCCAACCAATGAAATCTCTGAGCTGAATATTTTTGGACTATGGGCCTACGATGCTGCTTCTGCACTAGCCATGGCAGTTGAAAAACTTGGCGCGGGAAACTTCAGCTTCCAAAAGACCACCATTTCCAGAGATTCAACCAGTACTCGATTCAGAGGCCTTACCGGAGATTTTCAAATTATAGATGGGCAACTACACACATCAGCTTTCCAGATAGCCAATCTAAGAGCCATTATGTGGCCAGGAGAATCTACTTCTGTTCCTAAAGGTTGGGTGTTTCCTACCAATGGAAAGAAGTTGAAGATAGGGGTTCCAGAGAAAAAGGGTTTTTGTGAATTTGTAAAGGTGACGCGAGATCCTATCACTAATAAAACAAAGGCCACTGGTTACTCCATAGCTATCTTCGATGCCGTAATGGCAACATTACCATATGCTGTTCCTTATGAGTACGTTCCCTTAAAGATACGTGATAGAAAGGCTGCTGGTAACAAAGATGAATTGTTTCAAGGACATGTTCAGAAGTGTGACGCTCTGGTGGGAGATATTACTATTCTAGCGAGCAGGTCCTTGTATGTAGACTTTACACTGCCTTACACCGAGTCTGGCGTATCAATGATCGTGCCGATCATCGATAACAGAAGTAAAAGTGTTGGAGCATGGGTCTTTTTGAAGCCATTAACTTGGGACCTTTGGGTGACAAGCGCTTGTTTCTTTGTCTTCATTGGCTTGGTGATTTGGACTCTTGAACATCGAATAAATGAAGATTTCAGAGGGCCTCGTTCACATCAAGTTGGCACAATCTTCTGGTTCTCCTTCTCAACATTGGTGTTTGCTCAGAAGGAGAGAATTGTCAGCAACTTGGCTCGGATCGTGGTGATCATATTGTTTTTTGTGGTGCTGATTCTTACTCAAACTTACACAGCCAGCTTGACTTCAATGTTAACAGTTCAACAGCTCAACCCAACTATCACTGATATAAATGAGCTCATAAAGAAGGGGGAGCGTGTAGGTTACCAATATGGCTCTTTCGTTTATGAATTCTTGATCAAGTCGATGAAATTTGATGAGTCCAATCTTGTAAAGTATGAGTCACCAGAAGAACTGGATGAATTATTTTCAAAAGGTGGAATTACTGCTGCATTTGATGAAATCCCTTACATGAAGATTTTCCTTGCAAAATATTGCTCCAAATACACTGCAGTTGGACCAACATACAAGTTTGATGGGTTTGGATTTGTCTTTCGAAAGGGTTCACCCCTTGTAGCGGATGTTTCAAGGAAAGTTTTAAGCGTGACCGAGGGAGCTAAATTGTTAGAATTTGAGAAGGCATGGTTTGGGCAAACAACCAGTTGTCCAGAGCTCACCAGCTCAGTTTCTTCAAACAGTATCGGCCTTAATAGCTTTTGGGGCCTATTCCTTATTGCTGGAGTCGCTTCATTTGTAGCTCTCGTTGCATGCATCACCACATTCCTTTATGAAAATAGAAACGCCTTAATAAACTTGAATCCCCCATCTTCCTTATGGAGAAAAATTAAAGCCATGGCTACACGCTTTGATGACAAAGATCCCAGGTCTCATACCTTTAGAAAAAGTGATCAACTTCCAGACAAGGGGCATCAAAGCCATGGATGCAGTTACAGCCTCGCCAGCTACACCAACTTCCCTCCAAGTCCATCAAGCCTTCTGATCCCAACACACAGCGATTTTGCCTTCTTTGGAGAACAAGGAACACCTTCTTCTGGACATGGTGATCCAGTCTGTCCAAATCGGCCGATGTCTCCTCACATATTGTTTGAATATGAGCTTGCTAATTTAAATCACGAGCAAACAAGACCGCCTAAGTATGATGCCGTGGTGGGAGATACTACAATTGTAGCGAACAGGTCCAACTATGTAGATTTTACACTACCTTACACTGAATCCGGCGTATCAATGATCGTGCCCATCAAAGACAACAAAAGCAAAAGAGCATGGATTTTCTTGAAGCCATTGACTTGGGGCCTCTGGGTGACTAGTGCGTGTTTCTTTGTTTTCATCGGCTTTGTAATTTGGGTTCTTGAACATCGAATAAATGAAGATTTCAGGGGCCCTCCTTCACATCAAGCAGGCACCATCTTCTGGTTCTCCTTCTCAACTATGGTGTTTGCACAGAAGGAGAGAATTGTGAGCAACTTGGCTCGGTTTGTGATGATCATATGGTTCTTTGTGGTGCTCATCCTCACTCAAAGTTACACCGCCAGCTTGACCTCAATGTTAACCGTCCAACAGCTCCAGCCAACCGTTACAGACATAAAAGAGCTAAGAGCGAAAGGGGAGTATGTAGGTTACCAACAAGGCTCTTTCGTTCTCGGATTCTTGAAAAGGATGAACTTTGACGAATCCAAGTTTAGGATCTATAATTCTTCAGAAAAATTAGCTGAACTACTCTCGAAAGGGAGTGCAAATGGAGGTATTGCTGCTGCCTTTGACGAGATACCTTACATGAAGCTCTTCATTGCACAGCATTGCTCGAAATATACCATGGTTCAACCAACATACAAATATGATGGGTTCGGATTTGCCTTCCCAAGAGGTTCTCCTCTCGTACAGGATGTTTCAAGGGCAGTCTTAAATGTGACTGAGGGAGATGAAATGGTAAAGATTGAGAAAGAGTGGTTTGGGAAAAAAACTAGTTGTTCAGATGATAATGGAAGCTCAATTTCTTCTAACAATATCAGCCTTGATAGCTTTTGGGGCCTTTTCCTCATTGCTGGAGTCACTTCATCTTTAGCTCTGATCATAGGTATTGCCATGTTCCTGCATAAACATAGAGTTGGGGTAATGGGCGAAGATTCAGTATCAACAAAGATTAAAACCTTGGCTACACGTTTTGATCAAAAAGACCTCAGCTCTCATACTTTCAGAATACCTGACCAGCCATACAGCGGTAGCACTGAGCCTATGGCTGCAGTTGGGGCCTCTCCATCAGTGACTAACTGCTCGCCAAGGCCATCAACCTTTTCCAACCAAACCATTAAGGATATTTCCCTCTCCGGAGAACAAGGGACCTTTTCTTCAGAGCACGTGGTGGTCAGAGCTCAACCACACCTAGTAGGCAATCATCGCCAGTGA 3951 43.71 MAQNTTIPVKVGVVLDLDTWIGKMGLSCISMALSDFYASHGHYKTRVVTKIRDSKRDVGAAAAVVDLLQNEEVEAIIGPGSSMQANFMIGLGSKARVPIISFSATSPSLSSLQSQYFVRATLNDSAQVPAIRTIVQAFGWREVVLIYVDNEYGNEVVPSLTSALQEVDTHVTYRSAIHPSATDDQIVKELYKLMTMSTRVFIVHMLTPLGSQLFTKANEAGMMEEGYVWILTDGITDFLSTLDASAIDSMQGVLGVKPHVPRTKELESFKIRWKKKIQEEYPTNEISELNIFGLWAYDAASALAMAVEKLGAGNFSFQKTTISRDSTSTRFRGLTGDFQIIDGQLHTSAFQIANLRAIMWPGESTSVPKGWVFPTNGKKLKIGVPEKKGFCEFVKVTRDPITNKTKATGYSIAIFDAVMATLPYAVPYEYVPLKIRDRKAAGNKDELFQGHVQKCDALVGDITILASRSLYVDFTLPYTESGVSMIVPIIDNRSKSVGAWVFLKPLTWDLWVTSACFFVFIGLVIWTLEHRINEDFRGPRSHQVGTIFWFSFSTLVFAQKERIVSNLARIVVIILFFVVLILTQTYTASLTSMLTVQQLNPTITDINELIKKGERVGYQYGSFVYEFLIKSMKFDESNLVKYESPEELDELFSKGGITAAFDEIPYMKIFLAKYCSKYTAVGPTYKFDGFGFVFRKGSPLVADVSRKVLSVTEGAKLLEFEKAWFGQTTSCPELTSSVSSNSIGLNSFWGLFLIAGVASFVALVACITTFLYENRNALINLNPPSSLWRKIKAMATRFDDKDPRSHTFRKSDQLPDKGHQSHGCSYSLASYTNFPPSPSSLLIPTHSDFAFFGEQGTPSSGHGDPVCPNRPMSPHILFEYELANLNHEQTRPPKYDAVVGDTTIVANRSNYVDFTLPYTESGVSMIVPIKDNKSKRAWIFLKPLTWGLWVTSACFFVFIGFVIWVLEHRINEDFRGPPSHQAGTIFWFSFSTMVFAQKERIVSNLARFVMIIWFFVVLILTQSYTASLTSMLTVQQLQPTVTDIKELRAKGEYVGYQQGSFVLGFLKRMNFDESKFRIYNSSEKLAELLSKGSANGGIAAAFDEIPYMKLFIAQHCSKYTMVQPTYKYDGFGFAFPRGSPLVQDVSRAVLNVTEGDEMVKIEKEWFGKKTSCSDDNGSSISSNNISLDSFWGLFLIAGVTSSLALIIGIAMFLHKHRVGVMGEDSVSTKIKTLATRFDQKDLSSHTFRIPDQPYSGSTEPMAAVGASPSVTNCSPRPSTFSNQTIKDISLSGEQGTFSSEHVVVRAQPHLVGNHRQ* 1317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8723149 8739489 + Vvi4g655 Vvi4g655 785434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g655 1316 Gene3D - 374 497 - -
Vvi4g655 1316 MobiDBLite consensus disorder prediction 1262 1278 - -
Vvi4g655 1316 CDD GluR_Plant 894 1166 - -
Vvi4g655 1316 PANTHER GLUTAMATE RECEPTOR 2.9 354 831 - -
Vvi4g655 1316 PANTHER GLUTAMATE RECEPTOR 2.9 8 355 - -
Vvi4g655 1316 PANTHER GLUTAMATE RECEPTOR 2.9 893 1255 - -
Vvi4g655 1316 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 354 831 - -
Vvi4g655 1316 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 893 1255 - -
Vvi4g655 1316 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 8 355 - -
Vvi4g655 1316 CDD PBP1_GABAb_receptor_plant 10 355 IPR044440 -
Vvi4g655 1316 Pfam Bacterial extracellular solute-binding proteins, family 3 404 727 IPR001638 -
Vvi4g655 1316 Pfam Bacterial extracellular solute-binding proteins, family 3 894 1168 IPR001638 -
Vvi4g655 1316 Gene3D - 673 733 - -
Vvi4g655 1316 Pfam Ligand-gated ion channel 728 758 IPR001320 GO:0015276|GO:0016020
Vvi4g655 1316 Pfam Ligand-gated ion channel 1169 1199 IPR001320 GO:0015276|GO:0016020
Vvi4g655 1316 MobiDBLite consensus disorder prediction 1249 1278 - -
Vvi4g655 1316 MobiDBLite consensus disorder prediction 801 821 - -
Vvi4g655 1316 Gene3D - 888 937 - -
Vvi4g655 1316 Pfam Receptor family ligand binding region 28 355 IPR001828 -
Vvi4g655 1316 Gene3D - 1071 1174 - -
Vvi4g655 1316 MobiDBLite consensus disorder prediction 801 817 - -
Vvi4g655 1316 SUPERFAMILY Periplasmic binding protein-like I 8 357 IPR028082 -
Vvi4g655 1316 Gene3D - 938 1070 - -
Vvi4g655 1316 Gene3D - 498 642 - -
Vvi4g655 1316 SUPERFAMILY Periplasmic binding protein-like II 894 1169 - -
Vvi4g655 1316 Gene3D - 125 289 - -
Vvi4g655 1316 SUPERFAMILY Periplasmic binding protein-like II 354 727 - -
Vvi4g655 1316 CDD GluR_Plant 378 725 - -
Vvi4g655 1316 SMART GluR_14 379 727 IPR001320 GO:0015276|GO:0016020
Vvi4g655 1316 SMART GluR_14 859 1168 IPR001320 GO:0015276|GO:0016020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g655 K05387 - vvi:100245134 1717.59