Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g655 | ATGGCACAGAACACAACAATCCCAGTTAAAGTGGGAGTGGTTCTGGACTTGGATACATGGATTGGGAAGATGGGGTTGAGCTGCATCTCGATGGCCCTCTCAGACTTCTATGCCTCTCATGGCCACTACAAAACCAGGGTGGTTACAAAAATCAGAGACTCCAAAAGAGATGTTGGTGCAGCTGCAGCAGTTGTAGACCTCTTACAAAATGAAGAAGTGGAAGCCATAATAGGGCCCGGATCATCGATGCAGGCCAACTTCATGATTGGTCTTGGAAGCAAAGCTCGGGTGCCCATCATTTCATTTTCTGCAACAAGTCCTTCTCTTTCTTCGCTCCAGAGTCAATATTTTGTCCGAGCCACCCTAAATGACTCAGCTCAAGTACCAGCAATAAGGACAATAGTCCAGGCCTTTGGATGGAGAGAAGTTGTGCTTATTTACGTGGACAACGAGTATGGCAATGAAGTCGTACCGTCTCTGACTAGTGCCTTGCAGGAGGTGGACACCCATGTGACCTACCGGAGCGCCATTCATCCATCGGCAACTGACGATCAAATCGTTAAAGAACTTTACAAGTTGATGACGATGTCAACTAGGGTTTTCATTGTGCATATGCTTACGCCTCTTGGCTCCCAGCTTTTTACCAAAGCAAATGAGGCTGGAATGATGGAAGAAGGCTATGTTTGGATACTAACTGATGGGATAACTGACTTCTTGAGTACTTTGGACGCTTCAGCCATTGATTCGATGCAAGGGGTGTTGGGCGTCAAGCCCCATGTTCCAAGAACCAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAAGAAAATCCAAGAAGAATATCCAACCAATGAAATCTCTGAGCTGAATATTTTTGGACTATGGGCCTACGATGCTGCTTCTGCACTAGCCATGGCAGTTGAAAAACTTGGCGCGGGAAACTTCAGCTTCCAAAAGACCACCATTTCCAGAGATTCAACCAGTACTCGATTCAGAGGCCTTACCGGAGATTTTCAAATTATAGATGGGCAACTACACACATCAGCTTTCCAGATAGCCAATCTAAGAGCCATTATGTGGCCAGGAGAATCTACTTCTGTTCCTAAAGGTTGGGTGTTTCCTACCAATGGAAAGAAGTTGAAGATAGGGGTTCCAGAGAAAAAGGGTTTTTGTGAATTTGTAAAGGTGACGCGAGATCCTATCACTAATAAAACAAAGGCCACTGGTTACTCCATAGCTATCTTCGATGCCGTAATGGCAACATTACCATATGCTGTTCCTTATGAGTACGTTCCCTTAAAGATACGTGATAGAAAGGCTGCTGGTAACAAAGATGAATTGTTTCAAGGACATGTTCAGAAGTGTGACGCTCTGGTGGGAGATATTACTATTCTAGCGAGCAGGTCCTTGTATGTAGACTTTACACTGCCTTACACCGAGTCTGGCGTATCAATGATCGTGCCGATCATCGATAACAGAAGTAAAAGTGTTGGAGCATGGGTCTTTTTGAAGCCATTAACTTGGGACCTTTGGGTGACAAGCGCTTGTTTCTTTGTCTTCATTGGCTTGGTGATTTGGACTCTTGAACATCGAATAAATGAAGATTTCAGAGGGCCTCGTTCACATCAAGTTGGCACAATCTTCTGGTTCTCCTTCTCAACATTGGTGTTTGCTCAGAAGGAGAGAATTGTCAGCAACTTGGCTCGGATCGTGGTGATCATATTGTTTTTTGTGGTGCTGATTCTTACTCAAACTTACACAGCCAGCTTGACTTCAATGTTAACAGTTCAACAGCTCAACCCAACTATCACTGATATAAATGAGCTCATAAAGAAGGGGGAGCGTGTAGGTTACCAATATGGCTCTTTCGTTTATGAATTCTTGATCAAGTCGATGAAATTTGATGAGTCCAATCTTGTAAAGTATGAGTCACCAGAAGAACTGGATGAATTATTTTCAAAAGGTGGAATTACTGCTGCATTTGATGAAATCCCTTACATGAAGATTTTCCTTGCAAAATATTGCTCCAAATACACTGCAGTTGGACCAACATACAAGTTTGATGGGTTTGGATTTGTCTTTCGAAAGGGTTCACCCCTTGTAGCGGATGTTTCAAGGAAAGTTTTAAGCGTGACCGAGGGAGCTAAATTGTTAGAATTTGAGAAGGCATGGTTTGGGCAAACAACCAGTTGTCCAGAGCTCACCAGCTCAGTTTCTTCAAACAGTATCGGCCTTAATAGCTTTTGGGGCCTATTCCTTATTGCTGGAGTCGCTTCATTTGTAGCTCTCGTTGCATGCATCACCACATTCCTTTATGAAAATAGAAACGCCTTAATAAACTTGAATCCCCCATCTTCCTTATGGAGAAAAATTAAAGCCATGGCTACACGCTTTGATGACAAAGATCCCAGGTCTCATACCTTTAGAAAAAGTGATCAACTTCCAGACAAGGGGCATCAAAGCCATGGATGCAGTTACAGCCTCGCCAGCTACACCAACTTCCCTCCAAGTCCATCAAGCCTTCTGATCCCAACACACAGCGATTTTGCCTTCTTTGGAGAACAAGGAACACCTTCTTCTGGACATGGTGATCCAGTCTGTCCAAATCGGCCGATGTCTCCTCACATATTGTTTGAATATGAGCTTGCTAATTTAAATCACGAGCAAACAAGACCGCCTAAGTATGATGCCGTGGTGGGAGATACTACAATTGTAGCGAACAGGTCCAACTATGTAGATTTTACACTACCTTACACTGAATCCGGCGTATCAATGATCGTGCCCATCAAAGACAACAAAAGCAAAAGAGCATGGATTTTCTTGAAGCCATTGACTTGGGGCCTCTGGGTGACTAGTGCGTGTTTCTTTGTTTTCATCGGCTTTGTAATTTGGGTTCTTGAACATCGAATAAATGAAGATTTCAGGGGCCCTCCTTCACATCAAGCAGGCACCATCTTCTGGTTCTCCTTCTCAACTATGGTGTTTGCACAGAAGGAGAGAATTGTGAGCAACTTGGCTCGGTTTGTGATGATCATATGGTTCTTTGTGGTGCTCATCCTCACTCAAAGTTACACCGCCAGCTTGACCTCAATGTTAACCGTCCAACAGCTCCAGCCAACCGTTACAGACATAAAAGAGCTAAGAGCGAAAGGGGAGTATGTAGGTTACCAACAAGGCTCTTTCGTTCTCGGATTCTTGAAAAGGATGAACTTTGACGAATCCAAGTTTAGGATCTATAATTCTTCAGAAAAATTAGCTGAACTACTCTCGAAAGGGAGTGCAAATGGAGGTATTGCTGCTGCCTTTGACGAGATACCTTACATGAAGCTCTTCATTGCACAGCATTGCTCGAAATATACCATGGTTCAACCAACATACAAATATGATGGGTTCGGATTTGCCTTCCCAAGAGGTTCTCCTCTCGTACAGGATGTTTCAAGGGCAGTCTTAAATGTGACTGAGGGAGATGAAATGGTAAAGATTGAGAAAGAGTGGTTTGGGAAAAAAACTAGTTGTTCAGATGATAATGGAAGCTCAATTTCTTCTAACAATATCAGCCTTGATAGCTTTTGGGGCCTTTTCCTCATTGCTGGAGTCACTTCATCTTTAGCTCTGATCATAGGTATTGCCATGTTCCTGCATAAACATAGAGTTGGGGTAATGGGCGAAGATTCAGTATCAACAAAGATTAAAACCTTGGCTACACGTTTTGATCAAAAAGACCTCAGCTCTCATACTTTCAGAATACCTGACCAGCCATACAGCGGTAGCACTGAGCCTATGGCTGCAGTTGGGGCCTCTCCATCAGTGACTAACTGCTCGCCAAGGCCATCAACCTTTTCCAACCAAACCATTAAGGATATTTCCCTCTCCGGAGAACAAGGGACCTTTTCTTCAGAGCACGTGGTGGTCAGAGCTCAACCACACCTAGTAGGCAATCATCGCCAGTGA | 3951 | 43.71 | MAQNTTIPVKVGVVLDLDTWIGKMGLSCISMALSDFYASHGHYKTRVVTKIRDSKRDVGAAAAVVDLLQNEEVEAIIGPGSSMQANFMIGLGSKARVPIISFSATSPSLSSLQSQYFVRATLNDSAQVPAIRTIVQAFGWREVVLIYVDNEYGNEVVPSLTSALQEVDTHVTYRSAIHPSATDDQIVKELYKLMTMSTRVFIVHMLTPLGSQLFTKANEAGMMEEGYVWILTDGITDFLSTLDASAIDSMQGVLGVKPHVPRTKELESFKIRWKKKIQEEYPTNEISELNIFGLWAYDAASALAMAVEKLGAGNFSFQKTTISRDSTSTRFRGLTGDFQIIDGQLHTSAFQIANLRAIMWPGESTSVPKGWVFPTNGKKLKIGVPEKKGFCEFVKVTRDPITNKTKATGYSIAIFDAVMATLPYAVPYEYVPLKIRDRKAAGNKDELFQGHVQKCDALVGDITILASRSLYVDFTLPYTESGVSMIVPIIDNRSKSVGAWVFLKPLTWDLWVTSACFFVFIGLVIWTLEHRINEDFRGPRSHQVGTIFWFSFSTLVFAQKERIVSNLARIVVIILFFVVLILTQTYTASLTSMLTVQQLNPTITDINELIKKGERVGYQYGSFVYEFLIKSMKFDESNLVKYESPEELDELFSKGGITAAFDEIPYMKIFLAKYCSKYTAVGPTYKFDGFGFVFRKGSPLVADVSRKVLSVTEGAKLLEFEKAWFGQTTSCPELTSSVSSNSIGLNSFWGLFLIAGVASFVALVACITTFLYENRNALINLNPPSSLWRKIKAMATRFDDKDPRSHTFRKSDQLPDKGHQSHGCSYSLASYTNFPPSPSSLLIPTHSDFAFFGEQGTPSSGHGDPVCPNRPMSPHILFEYELANLNHEQTRPPKYDAVVGDTTIVANRSNYVDFTLPYTESGVSMIVPIKDNKSKRAWIFLKPLTWGLWVTSACFFVFIGFVIWVLEHRINEDFRGPPSHQAGTIFWFSFSTMVFAQKERIVSNLARFVMIIWFFVVLILTQSYTASLTSMLTVQQLQPTVTDIKELRAKGEYVGYQQGSFVLGFLKRMNFDESKFRIYNSSEKLAELLSKGSANGGIAAAFDEIPYMKLFIAQHCSKYTMVQPTYKYDGFGFAFPRGSPLVQDVSRAVLNVTEGDEMVKIEKEWFGKKTSCSDDNGSSISSNNISLDSFWGLFLIAGVTSSLALIIGIAMFLHKHRVGVMGEDSVSTKIKTLATRFDQKDLSSHTFRIPDQPYSGSTEPMAAVGASPSVTNCSPRPSTFSNQTIKDISLSGEQGTFSSEHVVVRAQPHLVGNHRQ* | 1317 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 8723149 | 8739489 | + | Vvi4g655 | Vvi4g655 | 785434 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g655 | 1316 | Gene3D | - | 374 | 497 | - | - | |
Vvi4g655 | 1316 | MobiDBLite | consensus disorder prediction | 1262 | 1278 | - | - | |
Vvi4g655 | 1316 | CDD | GluR_Plant | 894 | 1166 | - | - | |
Vvi4g655 | 1316 | PANTHER | GLUTAMATE RECEPTOR 2.9 | 354 | 831 | - | - | |
Vvi4g655 | 1316 | PANTHER | GLUTAMATE RECEPTOR 2.9 | 8 | 355 | - | - | |
Vvi4g655 | 1316 | PANTHER | GLUTAMATE RECEPTOR 2.9 | 893 | 1255 | - | - | |
Vvi4g655 | 1316 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 354 | 831 | - | - | |
Vvi4g655 | 1316 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 893 | 1255 | - | - | |
Vvi4g655 | 1316 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 8 | 355 | - | - | |
Vvi4g655 | 1316 | CDD | PBP1_GABAb_receptor_plant | 10 | 355 | IPR044440 | - | |
Vvi4g655 | 1316 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 404 | 727 | IPR001638 | - | |
Vvi4g655 | 1316 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 894 | 1168 | IPR001638 | - | |
Vvi4g655 | 1316 | Gene3D | - | 673 | 733 | - | - | |
Vvi4g655 | 1316 | Pfam | Ligand-gated ion channel | 728 | 758 | IPR001320 | GO:0015276|GO:0016020 | |
Vvi4g655 | 1316 | Pfam | Ligand-gated ion channel | 1169 | 1199 | IPR001320 | GO:0015276|GO:0016020 | |
Vvi4g655 | 1316 | MobiDBLite | consensus disorder prediction | 1249 | 1278 | - | - | |
Vvi4g655 | 1316 | MobiDBLite | consensus disorder prediction | 801 | 821 | - | - | |
Vvi4g655 | 1316 | Gene3D | - | 888 | 937 | - | - | |
Vvi4g655 | 1316 | Pfam | Receptor family ligand binding region | 28 | 355 | IPR001828 | - | |
Vvi4g655 | 1316 | Gene3D | - | 1071 | 1174 | - | - | |
Vvi4g655 | 1316 | MobiDBLite | consensus disorder prediction | 801 | 817 | - | - | |
Vvi4g655 | 1316 | SUPERFAMILY | Periplasmic binding protein-like I | 8 | 357 | IPR028082 | - | |
Vvi4g655 | 1316 | Gene3D | - | 938 | 1070 | - | - | |
Vvi4g655 | 1316 | Gene3D | - | 498 | 642 | - | - | |
Vvi4g655 | 1316 | SUPERFAMILY | Periplasmic binding protein-like II | 894 | 1169 | - | - | |
Vvi4g655 | 1316 | Gene3D | - | 125 | 289 | - | - | |
Vvi4g655 | 1316 | SUPERFAMILY | Periplasmic binding protein-like II | 354 | 727 | - | - | |
Vvi4g655 | 1316 | CDD | GluR_Plant | 378 | 725 | - | - | |
Vvi4g655 | 1316 | SMART | GluR_14 | 379 | 727 | IPR001320 | GO:0015276|GO:0016020 | |
Vvi4g655 | 1316 | SMART | GluR_14 | 859 | 1168 | IPR001320 | GO:0015276|GO:0016020 |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g655 | K05387 | - | vvi:100245134 | 1717.59 |