Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g656 ATGGTTTGTGAGATGGAGAATGATAACATTGAGGAAATGGATGTTGAGGTCCTCCACTCTATGTGGCCTGAAGACATTGGGAATGATGCTGGAAACCAATTCAATATGGATAGGCCAGGAGCAGATCAAGATATGTTGGAAGAGCATATCTCATATGGTGGTGACAAACGTCCAATTTCTATACTGGATGGCATTTATGATATATGGCAAGAAGTTCCACGGAGGAGAAATAGTGTTGTTGTTCAAAATAAAAGACTTGAAATAGATGCTGAATATGACACTGTCATATACTGGAAGCAGCGAGCTGTGCATTTAGAGAAATTGTTAGAGGCAAGTGTCCAGAGAGAGCATATGCTTATGGAGAAGGTGCAGGAAAGCATAAAAAGTCTGGAAAGGCAGTCATCCCCAGTGGAGGAACTGTCCCAGATTCTGAAAAGAGCAGATAATTTCTTACATTTCGTTCTACAGAATGCACCTGTTGTTATTGGCCATCAGGATAAAGAGCTGCGGTATCGTTTCATCTATAATCATTTCCCAAGTTTGCAAGAGGAGGACATCATAGGAAAAACAGACGTGGAGATTTTTACTGGTGCTGGTGTGAAGGAATCTCAGGAATTCAAGAAAGAGGTCTTGGAACGAGGATTGCCTGCAAAAAGGGAAATTACATTCGAGACTGAATTATTTGGTTCAAAGACATTTTTGATTTATGTGGAACCTGTCTTTAGCAAGGCAGGTGATACAATTGGTGTGAACTACATGGGGATGGATGTGACTGATCAGGTAAGGAAAAGAGAAAAGATGATGAAAATTCGAGAGGAGATAGCTGTACAAAAAGCCAAGGAAACAGAATTGAACAAAACAATTCATATAACAGAGGAGACAATGCGAGCAAAACAGATGCTAGCCACCATGTCTCATGAGATAAGATCTCCTCTATCTGGGGTTGTTAGCATTGCTGAAATTCTTGCCACTACAAACCTTGACCGGCACCAACGACAACTATTGAATGTCATGCTATCTTCAGGAGATTTGGTCCTTCAACTTATAAATGACATCCTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAGTTGGAAGCTACAAAATTCCGGCCAAGAGAGGTAGTAAAGCATGTACTCCAAACTGCTGCTGCGTCATTGCAAAAGATACTGACCTTGGAAGGACATGTTGCGGATGACGTTCCTCTTGAGGTCACTGGAGATGTCCTAAGGATTCGACAAATTCTCACCAACTTGATTAGCAATGCAGTGAAGTTTACCCATGAAGGAAAAGTTGGAATAAACCTTTATGTGATACCAGAGCCATCCTCTGGAAATGGAGAAGGAGACCCCATTAATCATGATGATTCAAAGCAGGAAGATAAAGAGAACTCTCACCCACTTGAGACAACTGTGTGGATACGATGTGATGTATATGACACTGGAATTGGAATACCAGAACATGCCTTACCTACTTTATTTAAAAAATACATGCAAGTCAGTGCAGATCATGCTCGCAAGTATGGTGGGACAGGATTGGGTTTGGCAATCTGCAAACAATTGGTTGAGCTGATGGGGGGGCATATGACTGTGTCCAGCAGAGAGCACTCTGGGTCTACTTTTACTTTTATTCTACCTTATAAGGTCTCACTGATAAGTGATCATTCGGATGATCCTGATGAACTCTCAGATATGGCTGATGACGATGCCTCAACCGATGATAAAAATGCTGGATTTTTTCAATTCCACCCACGCACTCTGGAGATGACATCTCTTGAAGACACATGTTCAGTAGTTGATGCTGCAGAGACATTATCTGAACCTGAAAGTTTCAAAGAAGTTGATGAAATGGGAAAAACAAGTGAGGCTCCAGAGATGTGTTTAAGGCTGGAGATATCTGAAAGAAGCTCTCAGTGCACTTCTAGCAGCAGTCCAGAAGAACCCAAATCAACATTAAAGCCTAAGATCCTTCTTGTAGAAGATAGTAAGATTAATGTAATGGTGACCCAGTCAATGATGAAGCAGTTAGGCCACACCATAGATGTTGTGAATAATGGAATTGAAGCCGTTCGTGCAGTTCAATGCCGTAGTTATGATCTCATTCTGATGGATGTATGTATGCCTGTGATGGATGGCCTTCAAGCTACAAGAATAATTCGATCTTTTGAAGAAACTGGCAATTGGGATGCTGCAGTAAAGGCTGGAATTGAGCCATCTACATGTTCTTCAGATTCATTACCAAATGGCCACGATTCTATGACAGTCACAAAGCGGGTCCCTATCATTGCGATGACAGCAAACGCCCTCTCAGAGAGTGCAGATGAGTGTTACGCGAATGGTATGGACTCATTTGTATCAAAGCCTGTCACATTTCAGAAGTTGACACAATGTCTTCAACAATACTTGACATGA 2412 41.58 MVCEMENDNIEEMDVEVLHSMWPEDIGNDAGNQFNMDRPGADQDMLEEHISYGGDKRPISILDGIYDIWQEVPRRRNSVVVQNKRLEIDAEYDTVIYWKQRAVHLEKLLEASVQREHMLMEKVQESIKSLERQSSPVEELSQILKRADNFLHFVLQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGAGVKESQEFKKEVLERGLPAKREITFETELFGSKTFLIYVEPVFSKAGDTIGVNYMGMDVTDQVRKREKMMKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSIAEILATTNLDRHQRQLLNVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKILTLEGHVADDVPLEVTGDVLRIRQILTNLISNAVKFTHEGKVGINLYVIPEPSSGNGEGDPINHDDSKQEDKENSHPLETTVWIRCDVYDTGIGIPEHALPTLFKKYMQVSADHARKYGGTGLGLAICKQLVELMGGHMTVSSREHSGSTFTFILPYKVSLISDHSDDPDELSDMADDDASTDDKNAGFFQFHPRTLEMTSLEDTCSVVDAAETLSEPESFKEVDEMGKTSEAPEMCLRLEISERSSQCTSSSSPEEPKSTLKPKILLVEDSKINVMVTQSMMKQLGHTIDVVNNGIEAVRAVQCRSYDLILMDVCMPVMDGLQATRIIRSFEETGNWDAAVKAGIEPSTCSSDSLPNGHDSMTVTKRVPIIAMTANALSESADECYANGMDSFVSKPVTFQKLTQCLQQYLT* 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8773509 8788445 - Vvi4g656 Vvi4g656 785435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g656 803 Gene3D PAS domain 138 272 - -
Vvi4g656 803 ProSiteProfiles Response regulatory domain profile. 655 802 IPR001789 GO:0000160
Vvi4g656 803 Pfam Response regulator receiver domain 656 723 IPR001789 GO:0000160
Vvi4g656 803 PRINTS Bacterial sensor protein C-terminal signature 474 488 IPR004358 GO:0016310|GO:0016772
Vvi4g656 803 PRINTS Bacterial sensor protein C-terminal signature 509 527 IPR004358 GO:0016310|GO:0016772
Vvi4g656 803 PRINTS Bacterial sensor protein C-terminal signature 533 546 IPR004358 GO:0016310|GO:0016772
Vvi4g656 803 MobiDBLite consensus disorder prediction 443 466 - -
Vvi4g656 803 SMART HKATPase_4 407 549 IPR003594 -
Vvi4g656 803 Gene3D - 649 803 - -
Vvi4g656 803 SUPERFAMILY CheY-like 654 802 IPR011006 -
Vvi4g656 803 CDD HATPase_EvgS-ArcB-TorS-like 412 546 - -
Vvi4g656 803 SMART HisKA_10 296 361 IPR003661 GO:0000155|GO:0007165
Vvi4g656 803 Coils Coil 113 133 - -
Vvi4g656 803 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 407 547 IPR003594 -
Vvi4g656 803 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 613 802 - -
Vvi4g656 803 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 50 442 - -
Vvi4g656 803 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 460 588 - -
Vvi4g656 803 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 48 - -
Vvi4g656 803 Pfam His Kinase A (phospho-acceptor) domain 298 361 IPR003661 GO:0000155|GO:0007165
Vvi4g656 803 MobiDBLite consensus disorder prediction 451 466 - -
Vvi4g656 803 SMART REC_2 654 798 IPR001789 GO:0000160
Vvi4g656 803 Gene3D - 362 551 IPR036890 -
Vvi4g656 803 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 350 547 IPR036890 -
Vvi4g656 803 ProSiteProfiles Histidine kinase domain profile. 303 549 IPR005467 -
Vvi4g656 803 CDD REC_hyHK_CKI1_RcsC-like 656 798 - -
Vvi4g656 803 Gene3D - 283 361 - -
Vvi4g656 803 CDD HisKA 298 357 IPR003661 GO:0000155|GO:0007165
Vvi4g656 803 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 460 588 - -
Vvi4g656 803 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 613 802 - -
Vvi4g656 803 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 50 442 - -
Vvi4g656 803 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 48 - -
Vvi4g656 803 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 294 361 IPR036097 GO:0000155|GO:0007165
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14769 PF02518 HATPase_c 1.00E-29 CL0025 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g656 - - vvi:100262281 1387.86