Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g656 ATGGTTTGTGAGATGGAGAATGATAACATTGAGGAAATGGATGTTGAGGTCCTCCACTCTATGTGGCCTGAAGACATTGGGAATGATGCTGGAAACCAATTCAATATGGATAGGCCAGGAGCAGATCAAGATATGTTGGAAGAGCATATCTCATATGGTGGTGACAAACGTCCAATTTCTATACTGGATGGCATTTATGATATATGGCAAGAAGTTCCACGGAGGAGAAATAGTGTTGTTGTTCAAAATAAAAGACTTGAAATAGATGCTGAATATGACACTGTCATATACTGGAAGCAGCGAGCTGTGCATTTAGAGAAATTGTTAGAGGCAAGTGTCCAGAGAGAGCATATGCTTATGGAGAAGGTGCAGGAAAGCATAAAAAGTCTGGAAAGGCAGTCATCCCCAGTGGAGGAACTGTCCCAGATTCTGAAAAGAGCAGATAATTTCTTACATTTCGTTCTACAGAATGCACCTGTTGTTATTGGCCATCAGGATAAAGAGCTGCGGTATCGTTTCATCTATAATCATTTCCCAAGTTTGCAAGAGGAGGACATCATAGGAAAAACAGACGTGGAGATTTTTACTGGTGCTGGTGTGAAGGAATCTCAGGAATTCAAGAAAGAGGTCTTGGAACGAGGATTGCCTGCAAAAAGGGAAATTACATTCGAGACTGAATTATTTGGTTCAAAGACATTTTTGATTTATGTGGAACCTGTCTTTAGCAAGGCAGGTGATACAATTGGTGTGAACTACATGGGGATGGATGTGACTGATCAGGTAAGGAAAAGAGAAAAGATGATGAAAATTCGAGAGGAGATAGCTGTACAAAAAGCCAAGGAAACAGAATTGAACAAAACAATTCATATAACAGAGGAGACAATGCGAGCAAAACAGATGCTAGCCACCATGTCTCATGAGATAAGATCTCCTCTATCTGGGGTTGTTAGCATTGCTGAAATTCTTGCCACTACAAACCTTGACCGGCACCAACGACAACTATTGAATGTCATGCTATCTTCAGGAGATTTGGTCCTTCAACTTATAAATGACATCCTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAGTTGGAAGCTACAAAATTCCGGCCAAGAGAGGTAGTAAAGCATGTACTCCAAACTGCTGCTGCGTCATTGCAAAAGATACTGACCTTGGAAGGACATGTTGCGGATGACGTTCCTCTTGAGGTCACTGGAGATGTCCTAAGGATTCGACAAATTCTCACCAACTTGATTAGCAATGCAGTGAAGTTTACCCATGAAGGAAAAGTTGGAATAAACCTTTATGTGATACCAGAGCCATCCTCTGGAAATGGAGAAGGAGACCCCATTAATCATGATGATTCAAAGCAGGAAGATAAAGAGAACTCTCACCCACTTGAGACAACTGTGTGGATACGATGTGATGTATATGACACTGGAATTGGAATACCAGAACATGCCTTACCTACTTTATTTAAAAAATACATGCAAGTCAGTGCAGATCATGCTCGCAAGTATGGTGGGACAGGATTGGGTTTGGCAATCTGCAAACAATTGGTTGAGCTGATGGGGGGGCATATGACTGTGTCCAGCAGAGAGCACTCTGGGTCTACTTTTACTTTTATTCTACCTTATAAGGTCTCACTGATAAGTGATCATTCGGATGATCCTGATGAACTCTCAGATATGGCTGATGACGATGCCTCAACCGATGATAAAAATGCTGGATTTTTTCAATTCCACCCACGCACTCTGGAGATGACATCTCTTGAAGACACATGTTCAGTAGTTGATGCTGCAGAGACATTATCTGAACCTGAAAGTTTCAAAGAAGTTGATGAAATGGGAAAAACAAGTGAGGCTCCAGAGATGTGTTTAAGGCTGGAGATATCTGAAAGAAGCTCTCAGTGCACTTCTAGCAGCAGTCCAGAAGAACCCAAATCAACATTAAAGCCTAAGATCCTTCTTGTAGAAGATAGTAAGATTAATGTAATGGTGACCCAGTCAATGATGAAGCAGTTAGGCCACACCATAGATGTTGTGAATAATGGAATTGAAGCCGTTCGTGCAGTTCAATGCCGTAGTTATGATCTCATTCTGATGGATGTATGTATGCCTGTGATGGATGGCCTTCAAGCTACAAGAATAATTCGATCTTTTGAAGAAACTGGCAATTGGGATGCTGCAGTAAAGGCTGGAATTGAGCCATCTACATGTTCTTCAGATTCATTACCAAATGGCCACGATTCTATGACAGTCACAAAGCGGGTCCCTATCATTGCGATGACAGCAAACGCCCTCTCAGAGAGTGCAGATGAGTGTTACGCGAATGGTATGGACTCATTTGTATCAAAGCCTGTCACATTTCAGAAGTTGACACAATGTCTTCAACAATACTTGACATGA 2412 41.58 MVCEMENDNIEEMDVEVLHSMWPEDIGNDAGNQFNMDRPGADQDMLEEHISYGGDKRPISILDGIYDIWQEVPRRRNSVVVQNKRLEIDAEYDTVIYWKQRAVHLEKLLEASVQREHMLMEKVQESIKSLERQSSPVEELSQILKRADNFLHFVLQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGAGVKESQEFKKEVLERGLPAKREITFETELFGSKTFLIYVEPVFSKAGDTIGVNYMGMDVTDQVRKREKMMKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSIAEILATTNLDRHQRQLLNVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKILTLEGHVADDVPLEVTGDVLRIRQILTNLISNAVKFTHEGKVGINLYVIPEPSSGNGEGDPINHDDSKQEDKENSHPLETTVWIRCDVYDTGIGIPEHALPTLFKKYMQVSADHARKYGGTGLGLAICKQLVELMGGHMTVSSREHSGSTFTFILPYKVSLISDHSDDPDELSDMADDDASTDDKNAGFFQFHPRTLEMTSLEDTCSVVDAAETLSEPESFKEVDEMGKTSEAPEMCLRLEISERSSQCTSSSSPEEPKSTLKPKILLVEDSKINVMVTQSMMKQLGHTIDVVNNGIEAVRAVQCRSYDLILMDVCMPVMDGLQATRIIRSFEETGNWDAAVKAGIEPSTCSSDSLPNGHDSMTVTKRVPIIAMTANALSESADECYANGMDSFVSKPVTFQKLTQCLQQYLT* 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8773509 8788445 - Vvi4g656 Vvi4g656 785435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g656 803 Gene3D PAS domain 138 272 - -
Vvi4g656 803 ProSiteProfiles Response regulatory domain profile. 655 802 IPR001789 GO:0000160
Vvi4g656 803 Pfam Response regulator receiver domain 656 723 IPR001789 GO:0000160
Vvi4g656 803 PRINTS Bacterial sensor protein C-terminal signature 474 488 IPR004358 GO:0016310|GO:0016772
Vvi4g656 803 PRINTS Bacterial sensor protein C-terminal signature 509 527 IPR004358 GO:0016310|GO:0016772
Vvi4g656 803 PRINTS Bacterial sensor protein C-terminal signature 533 546 IPR004358 GO:0016310|GO:0016772
Vvi4g656 803 MobiDBLite consensus disorder prediction 443 466 - -
Vvi4g656 803 SMART HKATPase_4 407 549 IPR003594 -
Vvi4g656 803 Gene3D - 649 803 - -
Vvi4g656 803 SUPERFAMILY CheY-like 654 802 IPR011006 -
Vvi4g656 803 CDD HATPase_EvgS-ArcB-TorS-like 412 546 - -
Vvi4g656 803 SMART HisKA_10 296 361 IPR003661 GO:0000155|GO:0007165
Vvi4g656 803 Coils Coil 113 133 - -
Vvi4g656 803 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 407 547 IPR003594 -
Vvi4g656 803 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 613 802 - -
Vvi4g656 803 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 50 442 - -
Vvi4g656 803 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 460 588 - -
Vvi4g656 803 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 48 - -
Vvi4g656 803 Pfam His Kinase A (phospho-acceptor) domain 298 361 IPR003661 GO:0000155|GO:0007165
Vvi4g656 803 MobiDBLite consensus disorder prediction 451 466 - -
Vvi4g656 803 SMART REC_2 654 798 IPR001789 GO:0000160
Vvi4g656 803 Gene3D - 362 551 IPR036890 -
Vvi4g656 803 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 350 547 IPR036890 -
Vvi4g656 803 ProSiteProfiles Histidine kinase domain profile. 303 549 IPR005467 -
Vvi4g656 803 CDD REC_hyHK_CKI1_RcsC-like 656 798 - -
Vvi4g656 803 Gene3D - 283 361 - -
Vvi4g656 803 CDD HisKA 298 357 IPR003661 GO:0000155|GO:0007165
Vvi4g656 803 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 460 588 - -
Vvi4g656 803 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 613 802 - -
Vvi4g656 803 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 50 442 - -
Vvi4g656 803 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 48 - -
Vvi4g656 803 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 294 361 IPR036097 GO:0000155|GO:0007165
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g656 - - - vvi:100262281 1387.86
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g656 Blo01g01429 . Bda01g00649 . . Bpe02g00521 . Bma01g02184 . . Cma01g01683 . Car09g00334 . . . Cpe06g00274 . . . . . . . Cla05g01652 Cam05g1764 Cec05g1770 Cco05g1829 Clacu05g1754 Cmu05g1639 Cre05g1767 Cone4ag1716 Cone7ag1634 . . Lsi04g01364 . . . . . . . . . . . Sed05g1812 Cmo01g01734 Cmo09g00388 Cma09g00387 . Car01g01298 . . Cpe02g00308 Bhi09g03051 Tan01g3520 Cmetu07g0647 . . . . . . . . . . . . . . Cme07g00153
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi4g1138 . 5 1168 Histidine Kinase Gene Family AT2G17820 67.1 0.0e+00 1484.2
Vvi1g534 . 1 839 Histidine Kinase Gene Family AT2G01830 70.4 0.0e+00 1194.1
Vvi1g1264 . 87 1035 Histidine Kinase Gene Family AT2G01830 54.9 4.3e-282 968.0
Vvi12g685 . 287 1201 Histidine Kinase Gene Family AT2G01830 53.8 3.3e-274 941.8
Vvi4g656 . 1 802 Histidine Kinase Gene Family AT5G10720 56.3 1.4e-273 939.5
Vvi14g7 . 1 1120 Histidine Kinase Gene Family AT1G09570 81.7 0.0e+00 1856.3
Vvi10g343 . 1 862 Histidine Kinase Gene Family AT1G09570 52.1 4.3e-256 881.7
Vvi5g63 . 13 922 Histidine Kinase Gene Family AT2G18790 67.2 0.0e+00 1356.3
Vvi14g7 . 7 1054 Histidine Kinase Gene Family AT2G18790 52.5 0.0e+00 1100.1
Vvi10g343 . 1 810 Histidine Kinase Gene Family AT2G18790 63.2 1.1e-304 1043.1
Vvi14g7 . 9 1114 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1149.0
Vvi12g703 . 10 913 Histidine Kinase Gene Family AT5G35840 53.7 0.0e+00 1117.4
Vvi5g63 . 6 974 Histidine Kinase Gene Family AT4G16250 64.3 0.0e+00 1377.1
Vvi14g7 . 14 1115 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1148.7
Vvi10g343 . 1 862 Histidine Kinase Gene Family AT4G16250 61.3 0.0e+00 1079.7
Vvi10g343 . 1 863 Histidine Kinase Gene Family AT4G18130 66.6 0.0e+00 1158.3
Vvi5g63 . 46 979 Histidine Kinase Gene Family AT4G18130 52.2 4.3e-301 1031.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005508 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14769 PF02518 HATPase_c 1.00E-29 CL0025 Vvi TR