Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g660 ATGCATATGATGAACCAAATGGAGTTCAAGAAGGAGAAGCTAGTGAGGTTTTGTAGTGATGAAAAACAAAATCTTGAAGTTTCCTGGGAAAAGGGTGAATCCCAACCGGTAGAAAGGCCAGTGAGTTACAAGGTTTTGCCCTCCTTATTGAACCCTGAAGGCAGGGCTGGTGAGAAGAATAGAACATATGGAACTCTCAGCTTTGGGAGGTTTAAGGTTTTCCCAGAAAGTCATGAACCATGGAGGAAACGAATTCTGGATCCTGGCAGTGATATTTTCTTGCAATGGAACAGAGTTTTCCTCTTCTCCTGTCTAGTAGCACTTTTTGTTGATCCATTGTTTTTCTACCTCCCTACTGTGGTTGGTGATGGCAATTCATCATGTTTCCGAACTGCTTATGTATCCCCAAGCTCAAGGGTGTTTGGAAGGGGTGAACTTGTTATGGATCCAAAGGAGATTGCCAGGCGGTATTTGAAATCAGACTTCTTCATAGACCTGGTTGCAACATTGCCTCTTCCTCAGATTGTCATATGGTTCGTAATTCCAGCAATTAGAAGCTCCCATGCTGATCATACCAACAATGCCCTTGTGCTAATTGTTTTGCTCCAATATGTTCCCAGATTATATCTGATTTTCCCGTTAAGTTCTCAGATTATTAAAGCCACAGGAGTTGTCACAAAAACTGCTTGGGCAGGGGCTGCATATAATCTCCTATTGTATATGTTAGCTAGTCATGTCTTAGGGGCATCATGGTATTTGTTGTCAATAGAACGGCATGCAACATGCTGGAAATCAGTTTGCAGAAAGGAGCTTGGCCCTATTAGATGCTTTCTTCGTTTCTTGGATTGTGGTACTTTGGACGATGATGATCGCAGGAAGTGGAATAATAGTACTTTTGTGTTTAGTCACTGTGATCCCAGCAAAGACATCAGTTTCAATTATGGAATATTTGGAGATGCGATAAAAAAGAATGTTGTATATTCAAAGTTTCTCGAGAAGTACTTCTATTGCTTATGGTGGGGCTTGCAGAACCTAAGTTCATATGGCCAGAGTTTGTCTACAAGCACATTTATTGGGGAAACTGCATTTGCCATACTTATCGCCATCTTGGGCCTGGTTCTGTTTGCTCATTTAATCGGAAACATGCAGACCTACTTGCAATCTATCACTGTGAGGCTTGAGGAGTGGAGGCTCAAGCGAAGAGACACAGAGGAATGGATGAGACACCGTCAACTACCTCAAGATCTGCGAGAGCGTGTTAGGCGGTTTGTCCAATACAAGTGGCTTGCTACTCGTGGAGTTGATGAAGAGTCAATTTTACGTGCCTTACCTACAGATTTACGTCGAGATATCCAGCGCCATCTATGCTTGGACCTTGTTCGACGTGTTCCCTTTTTCTCACAGATGGATGATCAGCTACTTGATGCAATATGTGAGCGCCTAGTATCATCCTTGAGTACTCAAGGTACCTACATAGTTCGCGAGGGTGACCCAGTTACAGAGATGCTCTTTATTATCAGAGGGAGACTAGAGAGCTCAACTACGAATGGAGGCAGAACAGGTTTCTTCAATTCAATTACTTTACGGCCAGGCGATTTTTGCGGGGAGGAGTTGCTTGCATGGGCATTACTTCCCAAAATTACTCAGAACTTGCCCTCTTCAACAAGAACAGTAAGAGCCCTTGTTGAGGTGGAAGCCTTTGCACTGCGAGCAGAGGATCTCAAGTTTGTTGCAAATCAGTTTAGACGTCTCCATAGTAAGAAGCTGCAGCACACTTTCCGCTTCTACTCTCACCACTGGAGGACCTGGGCAGCCTGCTTCATTCAGGCTGCTTGGCGCCGGTACAAGAAGCGGATAATGGCAAAGAACCTCAGCATGCGAGACTCCACAAAATCAAATTCTTCTCAGGCAAAGCAGCATCTAGGGGATGTTGAAATGCCCAAGCTGCAGAAGCCTGAAGAGCCAGACTTCTCGATTGAGCCAGATGATTACTAG 1995 44.26 MHMMNQMEFKKEKLVRFCSDEKQNLEVSWEKGESQPVERPVSYKVLPSLLNPEGRAGEKNRTYGTLSFGRFKVFPESHEPWRKRILDPGSDIFLQWNRVFLFSCLVALFVDPLFFYLPTVVGDGNSSCFRTAYVSPSSRVFGRGELVMDPKEIARRYLKSDFFIDLVATLPLPQIVIWFVIPAIRSSHADHTNNALVLIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHATCWKSVCRKELGPIRCFLRFLDCGTLDDDDRRKWNNSTFVFSHCDPSKDISFNYGIFGDAIKKNVVYSKFLEKYFYCLWWGLQNLSSYGQSLSTSTFIGETAFAILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMRHRQLPQDLRERVRRFVQYKWLATRGVDEESILRALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKITQNLPSSTRTVRALVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRIMAKNLSMRDSTKSNSSQAKQHLGDVEMPKLQKPEEPDFSIEPDDY* 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8890607 8897634 - Vvi4g660 Vvi4g660 785439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g660 664 SUPERFAMILY Voltage-gated potassium channels 88 387 - -
Vvi4g660 664 Pfam Ion transport protein 96 392 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi4g660 664 SUPERFAMILY cAMP-binding domain-like 395 587 IPR018490 -
Vvi4g660 664 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 129 631 - -
Vvi4g660 664 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 55 123 - -
Vvi4g660 664 Gene3D - 94 391 - -
Vvi4g660 664 MobiDBLite consensus disorder prediction 626 640 - -
Vvi4g660 664 Gene3D Jelly Rolls 463 583 IPR014710 -
Vvi4g660 664 SMART cnmp_10 465 596 IPR000595 -
Vvi4g660 664 CDD CAP_ED 465 596 IPR000595 -
Vvi4g660 664 ProSiteProfiles cAMP/cGMP binding motif profile. 465 546 IPR000595 -
Vvi4g660 664 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 55 123 - -
Vvi4g660 664 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 129 631 - -
Vvi4g660 664 MobiDBLite consensus disorder prediction 626 664 - -
Vvi4g660 664 Pfam Cyclic nucleotide-binding domain 488 576 IPR000595 -
Vvi4g660 664 Gene3D Helix hairpin bin 393 456 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g660 K05391 - vvi:100267557 1312.36