Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g666 ATGGAATATTCAGGGCAAAAGTTTGATGTAATTGTGATTGGAGGTGGCGTCATGGGCAGCTCCACCGCCTACCATGTTGCCAAGAGGGGGTACACCACGCTCTTGCTCGAGCAATTCGACTTCTTGCACCACAGGGGATCCTCACACGGCGAGTCCCGAACCATACGCGCAACCTACCCTGAAAACTACTACTTTGGCATGGTCGTGGAGGCTGCAAAACTATGGGAGCAAGTTCAGTCTGAAGTTGGCTATAAGGTCTATTACAAAACCCCACAATTTGACATGGGGCCATCAGATGACAAGAGTCTACGTTGTGTCATTGCCAACTGTGAATCCTATTCCATGCCTTGTCGAGTTCTTGACCCCGCCCAAGTCTCCGACCACTTCTCAGGGAAGATGGCTATCCCGGAGAATTGGATTGGGGTGTTGACTGAGCTAGGTGGTGTGATTAAGCCTACCAAAGCTGTGTCCATGTTCCAAACACTGGCTCTCCAGAATGCGATACAATCATGTATGTATTCGATGACCCCGGATGAGGACTTCGTCATCGATTTCTTGGGTGGGGAGTTGGGGAAGGATGTAGCAGTTGCAGGAGGGTTTTCGGGGCATGGATTCAAGATGGCGCCGCTGGTGGGGAGGACACTGGCAGAGATGGTGCTTGACGGGGAGGCAAAGGGTGTGGAGCTAAAGCACTTCAGGCTGGCAAGGTTTGAAGGGAACCCTAAAGGGAATGTTAAAGAGTTCGAAGATCAAGTTAGCCATTGTAAGCATAGGGAGTGA 780 50.9 MEYSGQKFDVIVIGGGVMGSSTAYHVAKRGYTTLLLEQFDFLHHRGSSHGESRTIRATYPENYYFGMVVEAAKLWEQVQSEVGYKVYYKTPQFDMGPSDDKSLRCVIANCESYSMPCRVLDPAQVSDHFSGKMAIPENWIGVLTELGGVIKPTKAVSMFQTLALQNAIQSCMYSMTPDEDFVIDFLGGELGKDVAVAGGFSGHGFKMAPLVGRTLAEMVLDGEAKGVELKHFRLARFEGNPKGNVKEFEDQVSHCKHRE* 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8999308 9004276 + Vvi4g666 Vvi4g666 785445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g666 259 Pfam FAD dependent oxidoreductase 9 167 IPR006076 GO:0016491
Vvi4g666 259 Pfam FAD dependent oxidoreductase 168 218 IPR006076 GO:0016491
Vvi4g666 259 Gene3D - 149 238 IPR036188 -
Vvi4g666 259 PANTHER PEROXISOMAL SARCOSINE OXIDASE 168 248 - -
Vvi4g666 259 PANTHER PEROXISOMAL SARCOSINE OXIDASE 6 166 - -
Vvi4g666 259 SUPERFAMILY FAD/NAD(P)-binding domain 7 238 IPR036188 -
Vvi4g666 259 Gene3D - 5 114 IPR036188 -
Vvi4g666 259 PANTHER PEROXISOMAL SARCOSINE OXIDASE 168 248 IPR045170 GO:0016491|GO:0050660
Vvi4g666 259 PANTHER PEROXISOMAL SARCOSINE OXIDASE 6 166 IPR045170 GO:0016491|GO:0050660
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g666 K00306 PIPOX; sarcosine oxidase / L-pipecolate oxidase [EC:1.5.3.1 1.5.3.7] - vvi:100265832 333.954
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g666 . . . . . Bpe02g00222 . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1863 Cone7ag1768 . . . Csa03g04410 Chy04g00290 . . . . . . . . . Sed13g2098 . . Cma09g00532 . . . . . Bhi09g02378 Tan01g3741 Cmetu04g0136 . Hepe01g2094 Mch11g0632 . . . . . . . . . . . Cme04g00332
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009558 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 1 1 1 1 1 1 33